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Mutations, Recombination and Insertion in the Evolution of 2019-nCoV

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Coronavirus Spike Protein and Tropism Changes
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Receptor recognition and cross-species infections of SARS coronavirus
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Accessory proteins of SARS-CoV and other coronaviruses
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Bat-to-human: spike features determining ‘host jump’ of coronaviruses SARS-CoV, MERS-CoV, and beyond
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Molecular Interactions in the Assembly of Coronaviruses
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A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster
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Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China
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Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding
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Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor
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A pneumonia outbreak associated with a new coronavirus of probable bat origin
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Addendum: A pneumonia outbreak associated with a new coronavirus of probable bat origin
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Evidence for Camel-to-Human Transmission of MERS Coronavirus
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A Novel Coronavirus from Patients with Pneumonia in China, 2019
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A Novel Coronavirus Emerging in China — Key Questions for Impact Assessment
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Activation of the SARS coronavirus spike protein via sequential proteolytic cleavage at two distinct sites
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Structures and Mechanisms of Viral Membrane Fusion Proteins: Multiple Variations on a Common Theme
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
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SWISS-MODEL: homology modelling of protein structures and complexes
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Fusion of Enveloped Viruses in Endosomes
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Bats Are Natural Reservoirs of SARS-Like Coronaviruses
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Mining coronavirus genomes for clues to the outbreak's origins
inferredcites →https://doi.org/10.1126/science.abb2507openalex-snapshot
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation
inferredcites →https://doi.org/10.1128/jvi.00127-20openalex-snapshot
Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus
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Severe Acute Respiratory Syndrome (SARS) Coronavirus ORF8 Protein Is Acquired from SARS-Related Coronavirus from Greater Horseshoe Bats through Recombination
inferredcites →https://doi.org/10.1128/jvi.01412-08openalex-snapshot
Entry from the Cell Surface of Severe Acute Respiratory Syndrome Coronavirus with Cleaved S Protein as Revealed by Pseudotype Virus Bearing Cleaved S Protein
inferredcites →https://doi.org/10.1128/jvi.01504-18openalex-snapshot
Lysosomal Proteases Are a Determinant of Coronavirus Tropism
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TMPRSS2 Activates the Human Coronavirus 229E for Cathepsin-Independent Host Cell Entry and Is Expressed in Viral Target Cells in the Respiratory Epithelium
inferredcites →https://doi.org/10.1146/annurev-virology-110615-042301openalex-snapshot
Structure, Function, and Evolution of Coronavirus Spike Proteins
inferredcites →https://doi.org/10.1371/journal.ppat.1006698openalex-snapshot
Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus
inferredcites →https://doi.org/10.1371/journal.ppat.1007236openalex-snapshot
Cryo-EM structure of the SARS coronavirus spike glycoprotein in complex with its host cell receptor ACE2
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Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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SARS‐CoV‐2: Mechanism of infection and emerging technologies for future prospects
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Advances in COVID-19: the virus, the pathogenesis, and evidence-based control and therapeutic strategies
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Mosaic Recombination Inflicted Various SARS-CoV-2 Lineages to Emerge into Novel Virus Variants: a Review Update
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Outbreak of COVID-19: An emerging global pandemic threat
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Epidemiological associations with genomic variation in SARS-CoV-2
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A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic
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RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus
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Research on the Evolutionary Path of COVID-19
inferred← citeshttps://doi.org/10.1093/bib/bbaa154openalex-snapshot
Application of Bayesian phylogenetic inference modelling for evolutionary genetic analysis and dynamic changes in 2019-nCoV
inferred← citeshttps://doi.org/10.1093/bib/bbaa385openalex-snapshot
SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci
inferred← citeshttps://doi.org/10.1093/bib/bbab222openalex-snapshot
Co-mutation modules capture the evolution and transmission patterns of SARS-CoV-2
inferred← citeshttps://doi.org/10.1101/2020.04.05.026146openalex-snapshot
CovProfile: profiling the viral genome and gene expressions of SARS-COV-2
inferred← citeshttps://doi.org/10.1101/2020.06.25.170688openalex-snapshot
Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in Spike Glycoprotein
inferred← citeshttps://doi.org/10.1101/2022.10.25.513701openalex-snapshot
Assessing SARS-CoV-2 evolution through the analysis of emerging mutations
inferred← citeshttps://doi.org/10.1109/tcbb.2021.3049836openalex-snapshot
Detection of Phenotype-Related Mutations of COVID-19 via the Whole Genomic Data
inferred← citeshttps://doi.org/10.1111/tbed.13791openalex-snapshot
Animal coronaviruses and SARS‐CoV‐2
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An Extensive Meta-Metagenomic Search Identifies SARS-CoV-2-Homologous Sequences in Pangolin Lung Viromes
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Screening of Secondary Metabolites in Artemisia annua as Potential Inhibitors of Coronavirus Proteases by in silico Approaches
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History of Epizootics, Epidemics and Evolution of Coronaviruses
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Genomic surveillance, evolution and global transmission of SARS-CoV-2 during 2019–2022
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History Of Epizootics, Epidemics And Evolution Of Coronaviruses
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Evolutionary dynamics of the severe acute respiratory syndrome coronavirus 2 genomes
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Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in Spike Glycoprotein
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Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in the Spike Glycoprotein
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A Focused Review on Emerging SARS-Cov-2 Variants
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Prediction of Potential Mutation of Chicken Coronavirus into Future Human Coronavirus Based on Spike S1 Glycoprotein Gene
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Structure-Based Primer Design Minimizes the Risk of PCR Failure Caused by SARS-CoV-2 Mutations
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Genetic Analysis of the Coronavirus SARS-CoV-2 Host Protease TMPRSS2 in Different Populations
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Prognostic Factors for COVID-19 Pneumonia Progression to Severe Symptoms Based on Earlier Clinical Features: A Retrospective Analysis
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Evolution, Ecology, and Zoonotic Transmission of Betacoronaviruses: A Review
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Highly Conserved Homotrimer Cavity Formed by the SARS-CoV-2 Spike Glycoprotein: A Novel Binding Site
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Mutational Frequencies of SARS-CoV-2 Genome during the Beginning Months of the Outbreak in USA
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Research Progress on Repositioning Drugs and Specific Therapeutic Drugs for SARS-CoV-2
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Unlocking capacities of viral genomics for the COVID-19 pandemic response
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Covid-19: Viral Pathogenesis and The Host Immune Response
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