On the public citation graph

Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in Spike Glycoprotein

https://doi.org/10.1101/2020.06.25.170688

0 signed · 77 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.5015openalex-snapshot

EasyCodeML: A visual tool for analysis of selection using CodeML

inferredcites →https://doi.org/10.1006/viro.1999.0056openalex-snapshot

Possible Emergence of New Geminiviruses by Frequent Recombination

inferredcites →https://doi.org/10.1007/978-1-4939-6622-6_17openalex-snapshot

Detecting and Analyzing Genetic Recombination Using RDP4

inferredcites →https://doi.org/10.1007/bf00182389openalex-snapshot

Analyzing the mosaic structure of genes

inferredcites →https://doi.org/10.1007/s00018-007-7103-1openalex-snapshot

Coronavirus envelope protein: A small membrane protein with multiple functions

inferredcites →https://doi.org/10.1016/j.cell.2018.12.028openalex-snapshot

Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion

inferredcites →https://doi.org/10.1016/j.cell.2020.02.058openalex-snapshot

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

inferredcites →https://doi.org/10.1016/j.febslet.2006.01.026openalex-snapshot

Characterization of severe acute respiratory syndrome coronavirus membrane protein

inferredcites →https://doi.org/10.1016/j.gene.2007.09.013openalex-snapshot

More effective purifying selection on RNA viruses than in DNA viruses

inferredcites →https://doi.org/10.1016/j.tim.2011.03.006openalex-snapshot

Two-stepping through time: mammals and viruses

inferredcites →https://doi.org/10.1016/j.tim.2015.06.003openalex-snapshot

Bat-to-human: spike features determining ‘host jump’ of coronaviruses SARS-CoV, MERS-CoV, and beyond

inferredcites →https://doi.org/10.1038/cr.2016.152openalex-snapshot

Cryo-electron microscopy structures of the SARS-CoV spike glycoprotein reveal a prerequisite conformational state for receptor binding

inferredcites →https://doi.org/10.1038/d41586-020-00973-xopenalex-snapshot

How sewage could reveal true scale of coronavirus outbreak

inferredcites →https://doi.org/10.1038/s41467-020-15562-9openalex-snapshot

Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV

inferredcites →https://doi.org/10.1038/s41564-020-0688-yopenalex-snapshot

Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses

inferredcites →https://doi.org/10.1038/s41586-020-2008-3openalex-snapshot

A new coronavirus associated with human respiratory disease in China

inferredcites →https://doi.org/10.1038/s41586-020-2012-7openalex-snapshot

A pneumonia outbreak associated with a new coronavirus of probable bat origin

inferredcites →https://doi.org/10.1038/s41594-020-0478-5openalex-snapshot

A thermostable, closed SARS-CoV-2 spike protein trimer

inferredcites →https://doi.org/10.1073/pnas.1708727114openalex-snapshot

Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion

inferredcites →https://doi.org/10.1074/jbc.m109.030270openalex-snapshot

Self-assembly of Severe Acute Respiratory Syndrome Coronavirus Membrane Protein

inferredcites →https://doi.org/10.1089/aid.2005.21.98openalex-snapshot

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

inferredcites →https://doi.org/10.1093/bioinformatics/16.7.573openalex-snapshot

Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences

inferredcites →https://doi.org/10.1093/bioinformatics/bti079openalex-snapshot

HyPhy: hypothesis testing using phylogenies

inferredcites →https://doi.org/10.1093/molbev/msi097openalex-snapshot

Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection

inferredcites →https://doi.org/10.1093/molbev/msi105openalex-snapshot

Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection

inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot

Application of Phylogenetic Networks in Evolutionary Studies

inferredcites →https://doi.org/10.1093/molbev/msp260openalex-snapshot

Evolutionary Fingerprinting of Genes

inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

inferredcites →https://doi.org/10.1093/molbev/msz197openalex-snapshot

HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004129openalex-snapshot

Evaluation of Methods for Detecting Recombination from DNA Sequences: Empirical Data

inferredcites →https://doi.org/10.1101/2020.02.07.939207openalex-snapshot

Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019

inferredcites →https://doi.org/10.1101/2020.02.29.971101openalex-snapshot

Mutations, Recombination and Insertion in the Evolution of 2019-nCoV

inferredcites →https://doi.org/10.1101/2020.03.04.975995openalex-snapshot

Strong evolutionary convergence of receptor-binding protein spike between COVID-19 and SARS-related coronaviruses

inferredcites →https://doi.org/10.1101/2020.04.15.042085openalex-snapshot

TMPRSS2 and furin are both essential for proteolytic activation and spread of SARS-CoV-2 in human airway epithelial cells and provide promising drug targets

inferredcites →https://doi.org/10.1126/sciadv.abb9153openalex-snapshot

Emergence of SARS-CoV-2 through recombination and strong purifying selection

inferredcites →https://doi.org/10.1126/science.abb2507openalex-snapshot

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

inferredcites →https://doi.org/10.1128/jvi.00127-20openalex-snapshot

Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus

inferredcites →https://doi.org/10.1128/jvi.00902-20openalex-snapshot

Evolutionary Arms Race between Virus and Host Drives Genetic Diversity in Bat Severe Acute Respiratory Syndrome-Related Coronavirus Spike Genes

inferredcites →https://doi.org/10.1128/jvi.01131-10openalex-snapshot

A Conserved Domain in the Coronavirus Membrane Protein Tail Is Important for Virus Assembly

inferredcites →https://doi.org/10.1128/jvi.75.19.9059-9067.2001openalex-snapshot

Cooperation of an RNA Packaging Signal and a Viral Envelope Protein in Coronavirus RNA Packaging

inferredcites →https://doi.org/10.12122/j.issn.1673-4254.2020.02.23openalex-snapshot

[Artificial intelligence empowers laboratory medicine in Industry 4.0].

inferredcites →https://doi.org/10.1371/journal.ppat.1004320openalex-snapshot

The PDZ-Binding Motif of Severe Acute Respiratory Syndrome Coronavirus Envelope Protein Is a Determinant of Viral Pathogenesis

inferredcites →https://doi.org/10.1642/auk-15-124.1openalex-snapshot

How connectivity shapes genetic structure during range expansion: Insights from the Virginia's Warbler

inferredcites →https://doi.org/10.3390/v4061011openalex-snapshot

Mechanisms of Coronavirus Cell Entry Mediated by the Viral Spike Protein

inferredcites →https://doi.org/10.3390/v6082991openalex-snapshot

The Coronavirus Nucleocapsid Is a Multifunctional Protein

inferredcites →https://doi.org/10.7554/elife.46440openalex-snapshot

Host-pathogen coevolution increases genetic variation in susceptibility to infection

inferredcites →https://doi.org/10.7717/peerj.4114openalex-snapshot

Molecular evolution of virulence genes and non-virulence genes in clinical, natural and artificial environmentalLegionella pneumophilaisolates

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-031-85167-4_15openalex-snapshot

Computational Analysis of Mutation Effect on SARS-CoV-2 Spike Protein Structures

inferred← citeshttps://doi.org/10.1007/s15010-021-01677-8openalex-snapshot

SARS-CoV-2 spike protein: pathogenesis, vaccines, and potential therapies

inferred← citeshttps://doi.org/10.1016/j.antiviral.2023.105668openalex-snapshot

Mpox virus mRNA-lipid nanoparticle vaccine candidates evoke antibody responses and drive protection against the Vaccinia virus challenge in mice

inferred← citeshttps://doi.org/10.1016/j.biopha.2022.113104openalex-snapshot

High-throughput drug screening allowed identification of entry inhibitors specifically targeting different routes of SARS-CoV-2 Delta and Omicron/BA.1

inferred← citeshttps://doi.org/10.1016/j.heliyon.2021.e07866openalex-snapshot

Molecular characterization of SARS-CoV-2 from Bangladesh: implications in genetic diversity, possible origin of the virus, and functional significance of the mutations

inferred← citeshttps://doi.org/10.1016/j.immuno.2023.100021openalex-snapshot

The race to understand immunopathology in COVID-19: Perspectives on the impact of quantitative approaches to understand within-host interactions

inferred← citeshttps://doi.org/10.1016/j.matpr.2021.02.387openalex-snapshot

COVID-19 outbreak in Malaysia: Decoding D614G mutation of SARS-CoV-2 virus isolated from an asymptomatic case in Pahang

inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104556openalex-snapshot

Quasi-species nature and differential gene expression of severe acute respiratory syndrome coronavirus 2 and phylogenetic analysis of a novel Iranian strain

inferred← citeshttps://doi.org/10.1038/s41579-021-00573-0openalex-snapshot

SARS-CoV-2 variants, spike mutations and immune escape

inferred← citeshttps://doi.org/10.1038/s41598-021-91585-6openalex-snapshot

SARS-CoV-2 mutations in Brazil: from genomics to putative clinical conditions

inferred← citeshttps://doi.org/10.1038/s41598-022-16533-4openalex-snapshot

Mutational induction in SARS-CoV-2 major lineages by experimental exposure to neutralising sera

inferred← citeshttps://doi.org/10.1038/s41598-023-40005-yopenalex-snapshot

Spike protein mutations and structural insights of pangolin lineage B.1.1.25 with implications for viral pathogenicity and ACE2 binding affinity

inferred← citeshttps://doi.org/10.1101/2020.09.29.20202416openalex-snapshot

Virus evolution affected early COVID-19 spread

inferred← citeshttps://doi.org/10.1101/2023.06.21.545910openalex-snapshot

Spatial and Temporal Analysis of SARS-CoV-2 Genome Evolutionary Patterns

inferred← citeshttps://doi.org/10.1128/spectrum.02654-23openalex-snapshot

Analysis of SARS-CoV-2 genome evolutionary patterns

inferred← citeshttps://doi.org/10.1186/s12879-022-07510-3openalex-snapshot

Using outbreak data to estimate the dynamic COVID-19 landscape in Eastern Africa

inferred← citeshttps://doi.org/10.14302/issn.2692-1537.ijcv-21-3756openalex-snapshot

Molecular Evolutionary Characteristics of the 2019 Novel Coronavirus (SARS-CoV-2) Contracted by Tunisian Citizens: Comparison and Relationship to Other Human and Animal Coronaviruses Based on Spike Glycoprotein-Coding Gene Sequences Analysis

inferred← citeshttps://doi.org/10.21203/rs.3.rs-968594/v1openalex-snapshot

Genome sequencing and genetic characterization of 17 SARS-CoV-2 viruses and spike protein analyses of isolates from Bangladeshi patients

inferred← citeshttps://doi.org/10.26434/chemrxiv.14045783openalex-snapshot

SARS-CoV-2 Mutations in Brazil: From Genomics to Clinical Conditions

inferred← citeshttps://doi.org/10.3389/fcimb.2022.1083234openalex-snapshot

Evolutionary dissection of monkeypox virus: Positive Darwinian selection drives the adaptation of virus–host interaction proteins

inferred← citeshttps://doi.org/10.3389/fgene.2023.1220906openalex-snapshot

Natural selection shapes the evolution of SARS-CoV-2 Omicron in Bangladesh

inferred← citeshttps://doi.org/10.3389/fmed.2021.806641openalex-snapshot

The Variation of SARS-CoV-2 and Advanced Research on Current Vaccines

inferred← citeshttps://doi.org/10.3390/diseases11020064openalex-snapshot

Development of SARS-CoV-2 Vaccine: Challenges and Prospects

inferred← citeshttps://doi.org/10.3390/genes14020407openalex-snapshot

Molecular Evolution of SARS-CoV-2 during the COVID-19 Pandemic

inferred← citeshttps://doi.org/10.3390/v14081603openalex-snapshot

Immune Escape Associated with RBD Omicron Mutations and SARS-CoV-2 Evolution Dynamics

inferred← citeshttps://doi.org/10.4155/tde-2021-0075openalex-snapshot

SARS-CoV-2: Vaccinology and Emerging therapeutics; Challenges and Future Developments

inferred← citeshttps://doi.org/10.6084/m9.figshare.20047182openalex-snapshot

Additional file 1 of Using outbreak data to estimate the dynamic COVID-19 landscape in Eastern Africa

inferred← citeshttps://doi.org/10.6084/m9.figshare.20047188openalex-snapshot

Additional file 2 of Using outbreak data to estimate the dynamic COVID-19 landscape in Eastern Africa

inferred← citeshttps://doi.org/10.6084/m9.figshare.20047191openalex-snapshot

Additional file 3 of Using outbreak data to estimate the dynamic COVID-19 landscape in Eastern Africa

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.