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Uncovering microbial populations in the lumen of neonatal enteral feeding tubes utilising 16s rRNA sequencing

https://doi.org/10.1101/2020.03.02.972703

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Development of the Neonatal Intestinal Microbiome and Its Association With Necrotizing Enterocolitis

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Bacterial Meningitis in Infants

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Toll-like receptor regulation of intestinal development and inflammation in the pathogenesis of necrotizing enterocolitis

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Breastfeeding and Health Outcomes for the Mother-Infant Dyad

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Human Milk Composition

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Necrotizing enterocolitis and preterm infant gut bacteria

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Feeding Practices for Infants Weighing Less Than 1500 G at Birth and the Pathogenesis of Necrotizing Enterocolitis

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Role of human milk in extremely low birth weight infants’ risk of necrotizing enterocolitis or death

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Structure, function and diversity of the healthy human microbiome

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DADA2: High-resolution sample inference from Illumina amplicon data

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Nasogastric feeding tubes from a neonatal department yield high concentrations of potentially pathogenic bacteria— even 1 d after insertion

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Inhibition of insulin resistance by PGE1 via autophagy-dependent FGF21 pathway in diabetic nephropathy

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Intestinal microbiota development and gestational age in preterm neonates

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Necrotizing Enterocolitis

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Allergy development and the intestinal microflora during the first year of life

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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

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Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

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An Exclusively Human Milk Diet Reduces Necrotizing Enterocolitis

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Hypothesis: inappropriate colonization of the premature intestine can cause neonatal necrotizing enterocolitis

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Minority species influences microbiota formation: the role of Bifidobacterium with extracellular glycosidases in bifidus flora formation in breastfed infant guts

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Intestinal microbial profiles in extremely preterm infants with and without necrotizing enterocolitis

inferredcites →https://doi.org/10.1111/j.1348-0421.2002.tb02731.xopenalex-snapshot

Phylogenetic Analysis of the Human Gut Microbiota Using 16S rDNA Clone Libraries and Strictly Anaerobic Culture‐Based Methods

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Epidemiology of necrotizing enterocolitis

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Modulation of type 1 and type 2 diabetes risk by the intestinal microbiome

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Diversity of the Human Intestinal Microbial Flora

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Duodenal Microflora in Very-Low-Birth-Weight Neonates and Relation to Necrotizing Enterocolitis

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Dynamics of Infant Gut Microbiota Are Influenced by Delivery Mode and Gestational Duration and Are Associated with Subsequent Adiposity

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Growth failure and pituitary function in CHARGE and VATER associations

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Epidemiology of UK neonatal infections: the neonIN infection surveillance network

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Blocking ofPseudomonas aeruginosalectins by human milk glycans

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A combined approach for comparative exoproteome analysis of Corynebacterium pseudotuberculosis

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Community analysis of bacteria colonizing intestinal tissue of neonates with necrotizing enterocolitis

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Neonatal enteral feeding tubes as loci for colonisation by members of the Enterobacteriaceae

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Different inflammatory responses are associated with Ureaplasma parvum-induced UTI and urolith formation

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Scalable linkage-disequilibrium-based selective sweep detection: a performance guide

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Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

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Evolution of Bacterial Consortia in Spontaneously Started Rye Sourdoughs during Two Months of Daily Propagation

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Enterococcus faecalis from Healthy Infants Modulates Inflammation through MAPK Signaling Pathways

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Necrotizing Enterocolitis in Newborns

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Prolonged exposure to antibiotics and its associations in extremely preterm neonates - the Western Australian experience

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Effect of Breast and Formula Feeding on Gut Microbiota Shaping in Newborns

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Role of the normal gut microbiota

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Early life establishment of site-specific microbial communities in the gut

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