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Strong evolutionary convergence of receptor-binding protein spike between COVID-19 and SARS-related coronaviruses

https://doi.org/10.1101/2020.03.04.975995
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Cross‐species transmission of the newly identified coronavirus 2019‐nCoV
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SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
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The hearing gene Prestin unites echolocating bats and whales
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Characterization of the 3a Protein of SARS-associated Coronavirus in Infected Vero E6 Cells and SARS Patients
inferredcites →https://doi.org/10.1016/s0140-6736(20)30251-8openalex-snapshot
Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding
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Pathological findings of COVID-19 associated with acute respiratory distress syndrome
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Adaptive evolution in the stomach lysozymes of foregut fermenters
inferredcites →https://doi.org/10.1038/ng1812openalex-snapshot
Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys
inferredcites →https://doi.org/10.1038/nrmicro2090openalex-snapshot
The spike protein of SARS-CoV — a target for vaccine and therapeutic development
inferredcites →https://doi.org/10.1038/s41586-020-2008-3openalex-snapshot
A new coronavirus associated with human respiratory disease in China
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A pneumonia outbreak associated with a new coronavirus of probable bat origin
inferredcites →https://doi.org/10.1038/s41586-020-2180-5openalex-snapshot
Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor
inferredcites →https://doi.org/10.1038/s41598-017-12090-3openalex-snapshot
Rethinking the Origin of Primates by Reconstructing Their Diel Activity Patterns Using Genetics and Morphology
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Invasion of Ancestral Mammals into Dim-light Environments Inferred from Adaptive Evolution of the Phototransduction Genes
inferredcites →https://doi.org/10.1056/nejm-jw.na50821openalex-snapshot
Clinical Characteristics of 2019 Novel Coronavirus Infection
inferredcites →https://doi.org/10.1056/nejmoa2001017openalex-snapshot
A Novel Coronavirus from Patients with Pneumonia in China, 2019
inferredcites →https://doi.org/10.1056/nejmoa2002032openalex-snapshot
Clinical Characteristics of Coronavirus Disease 2019 in China
inferredcites →https://doi.org/10.1073/pnas.0802097105openalex-snapshot
The hearing gene Prestin reunites echolocating bats
inferredcites →https://doi.org/10.1073/pnas.1511706112openalex-snapshot
Widespread convergence in toxin resistance by predictable molecular evolution
inferredcites →https://doi.org/10.1073/pnas.1613870114openalex-snapshot
Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msq115openalex-snapshot
The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection
inferredcites →https://doi.org/10.1093/molbev/msq344openalex-snapshot
Reverse Evolution in RH1 for Adaptation of Cichlids to Water Depth in Lake Tanganyika
inferredcites →https://doi.org/10.1093/molbev/msu400openalex-snapshot
RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025789openalex-snapshot
Detection of convergent and parallel evolution at the amino acid sequence level
inferredcites →https://doi.org/10.1098/rspb.2018.2185openalex-snapshot
Convergent evolution of bird-mammal shared characteristics for adapting to nocturnality
inferredcites →https://doi.org/10.1101/2020.02.10.942748openalex-snapshot
Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2
inferredcites →https://doi.org/10.1101/2020.02.17.951335openalex-snapshot
Isolation and Characterization of 2019-nCoV-like Coronavirus from Malayan Pangolins
inferredcites →https://doi.org/10.1126/science.1116480openalex-snapshot
Structure of SARS Coronavirus Spike Receptor-Binding Domain Complexed with Receptor
inferredcites →https://doi.org/10.1126/science.1226630openalex-snapshot
Parallel Molecular Evolution in an Herbivore Community
inferredcites →https://doi.org/10.1126/science.abb2507openalex-snapshot
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation
inferredcites →https://doi.org/10.1128/jvi.00127-20openalex-snapshot
Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus
inferredcites →https://doi.org/10.1128/jvi.02582-15openalex-snapshot
Isolation and Characterization of a Novel Bat Coronavirus Closely Related to the Direct Progenitor of Severe Acute Respiratory Syndrome Coronavirus
inferredcites →https://doi.org/10.1128/jvi.79.23.14909-14922.2005openalex-snapshot
Severe Acute Respiratory Syndrome Coronavirus Group-Specific Open Reading Frames Encode Nonessential Functions for Replication in Cell Cultures and Mice
inferredcites →https://doi.org/10.1186/1471-2105-11-579openalex-snapshot
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
inferredcites →https://doi.org/10.1186/1743-422x-2-5openalex-snapshot
The Severe Acute Respiratory Syndrome (SARS)-coronavirus 3a protein may function as a modulator of the trafficking properties of the spike protein
inferredcites →https://doi.org/10.1371/journal.pgen.1002788openalex-snapshot
Parallel Evolution of Auditory Genes for Echolocation in Bats and Toothed Whales
inferredcites →https://doi.org/10.1371/journal.ppat.1006698openalex-snapshot
Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus
inferredcites →https://doi.org/10.3389/fmicb.2019.01900openalex-snapshot
Identification of Diverse Bat Alphacoronaviruses and Betacoronaviruses in China Provides New Insights Into the Evolution and Origin of Coronavirus-Related Diseases
inferredcites →https://doi.org/10.3389/fmicb.2020.597510openalex-snapshot
Corrigendum: Identification of Diverse Bat Alphacoronaviruses and Betacoronaviruses in China Provides New Insights Into the Evolution and Origin of Coronavirus-Related Diseases
inferredcites →https://doi.org/10.3390/v4112902openalex-snapshot
The Role of Severe Acute Respiratory Syndrome (SARS)-Coronavirus Accessory Proteins in Virus Pathogenesis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genome based evolutionary lineage of SARS-CoV-2 towards the development of novel chimeric vaccine
inferred← citeshttps://doi.org/10.1021/acs.analchem.0c05438openalex-snapshot
Developing a Paper-Based Antigen Assay to Differentiate between Coronaviruses and SARS-CoV-2 Spike Variants
inferred← citeshttps://doi.org/10.1042/bsr20201312openalex-snapshot
A virus that has gone viral: amino acid mutation in S protein of Indian isolate of Coronavirus COVID-19 might impact receptor binding, and thus, infectivity
inferred← citeshttps://doi.org/10.1101/2020.05.01.073262openalex-snapshot
SARS-CoV-2 is well adapted for humans. What does this mean for re-emergence?
inferred← citeshttps://doi.org/10.1101/2020.06.25.170688openalex-snapshot
Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in Spike Glycoprotein
inferred← citeshttps://doi.org/10.1128/mbio.02979-21openalex-snapshot
The Impact of Evolving SARS-CoV-2 Mutations and Variants on COVID-19 Vaccines
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An Extensive Meta-Metagenomic Search Identifies SARS-CoV-2-Homologous Sequences in Pangolin Lung Viromes
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Assessing Knowledge Claims in Scientific Controversies: On the Origins of COVID-19
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A look into the future of the COVID-19 pandemic in Europe: an expert consultation [viewpoint].
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Modest Evolutionary Changes of the SARS-CoV-2 Genome in Bangladesh
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Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in Spike Glycoprotein
inferred← citeshttps://doi.org/10.21203/rs.3.rs-42498/v2openalex-snapshot
Molecular Evolution of SARS-CoV-2 Structural Genes: Evidence of Positive Selection in the Spike Glycoprotein
inferred← citeshttps://doi.org/10.21769/bioprotoc.4034openalex-snapshot
Optimised Method for the Production and Titration of Lentiviral Vectors Pseudotyped with the SARS-CoV-2 Spike
inferred← citeshttps://doi.org/10.21769/bioprotoc.4194openalex-snapshot
Optimised Method for the Production and Titration of Lentiviral Vectors Pseudotyped with the SARS-CoV-2 Spike
inferred← citeshttps://doi.org/10.3390/vaccines10050676openalex-snapshot
A COVID-19 Vaccine for Dogs Prevents Reverse Zoonosis
inferred← citeshttps://doi.org/10.3889/oamjms.2020.4763openalex-snapshot
Evaluation of Angiotensin-converting Enzyme 2 (ACE2) in COVID-19: A Systematic Review on All Types of Studies for Epidemiologic, Diagnostic, and Therapeutic Purposes
inferred← citeshttps://doi.org/10.4236/ce.2021.121014openalex-snapshot
Use of Bioinformatics Technologies and Databases to Teach Analysis of Genetic Sequences to Undergraduate Students in Physics, Biotechnology, and Biology: The Specific Case of the SARS-CoV-2 Spike Protein
inferred← citeshttps://doi.org/10.53846/goediss-10390openalex-snapshot
Coupled dynamics of the spread of COVID-19, interventions and human behaviour
inferred← citeshttps://doi.org/10.7774/cevr.2020.9.2.169openalex-snapshot
Coronavirus epitope prediction from highly conserved region of spike protein
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