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Complete mitochondrial genomes do not distinguish phenotypically distinct lineages of Andean Coeligena hummingbirds

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular and iridescent feather reflectance data reveal recent genetic diversification and phenotypic differentiation in a cloud forest hummingbird
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Sexual dichromatism of the Blue-throated Starfrontlet, Coeligena helianthea, hummingbird plumage
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The role of geography and ecology in shaping the p hylogeography of the speckled hummingbird (Adelomyia melanogenys) in Ecuador
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The relative roles of vicariance versus elevational gradients in the genetic differentiation of the high Andean tree frog, Dendropsophus labialis
inferredcites →https://doi.org/10.1016/j.ympev.2009.07.006openalex-snapshot
Molecular phylogenetics of the hummingbird genus Coeligena
inferredcites →https://doi.org/10.1016/j.ympev.2010.07.018openalex-snapshot
A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves)
inferredcites →https://doi.org/10.1016/j.ympev.2011.04.007openalex-snapshot
Evolutionary patterns of diversification in the Andean hummingbird genus Adelomyia
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Non-monophyly and deep genetic differentiation across low-elevation barriers in a Neotropical montane bird (Basileuterus tristriatus; Aves: Parulidae)
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A multilocus analysis provides evidence for more than one species within Eugenes fulgens (Aves: Trochilidae)
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Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla)
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The evolution, maintenance and adaptive function of genetic colour polymorphism in birds
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Animal mitochondrial DNA recombination
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Extensive mitochondrial introgression in North American Great Black-backed Gulls (Larus marinus) from the American Herring Gull (Larus smithsonianus) with little nuclear DNA impact
inferredcites →https://doi.org/10.1038/hdy.2016.108openalex-snapshot
DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA
inferredcites →https://doi.org/10.1038/s41467-018-03294-wopenalex-snapshot
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The incomplete natural history of mitochondria
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Speciation in birds: Genes, geography, and sexual selection
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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A Broad Survey of Recombination in Animal Mitochondria
inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
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“Ghost Introgression” As a Cause of Deep Mitochondrial Divergence in a Bird Species Complex
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Testing the contribution of individual genes in mitochondrial genomes for assessing phylogenetic relationships in Vetigastropoda
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Median-joining networks for inferring intraspecific phylogenies
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Introgression and Phenotypic Assimilation in Zimmerius Flycatchers (Tyrannidae): Population Genetic and Phylogenetic Inferences from Genome-Wide SNPs
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Issues and Perspectives in Species Delimitation using Phenotypic Data: Atlantean Evolution in Darwin’s Finches
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inferredcites →https://doi.org/10.1098/rspb.2010.0965openalex-snapshot
Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles
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A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years
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Shallow evolutionary divergence between two Andean hummingbirds: Speciation with gene flow?
inferredcites →https://doi.org/10.1101/855833openalex-snapshot
Mitochondrial substitution rates estimation for molecular clock analyses in modern birds based on full mitochondrial genomes
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popart : full‐feature software for haplotype network construction
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The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru
inferredcites →https://doi.org/10.1111/evo.13296openalex-snapshot
A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes
inferredcites →https://doi.org/10.1111/evo.13893openalex-snapshot
Signal evolution and morphological complexity in hummingbirds (Aves:Trochilidae)
inferredcites →https://doi.org/10.1111/j.0908-8857.2004.03316.xopenalex-snapshot
Is there a universal mtDNA clock for birds?
inferredcites →https://doi.org/10.1111/j.1095-8312.1985.tb02048.xopenalex-snapshot
Mitochondrial DNA and two perspectives on evolutionary genetics
inferredcites →https://doi.org/10.1111/j.1095-8312.2009.01282.xopenalex-snapshot
Mitochondrial introgression and replacement between yellowhammers (Emberiza citrinella) and pine buntings (Emberiza leucocephalos) (Aves: Passeriformes)
inferredcites →https://doi.org/10.1111/j.1365-2699.2009.02200.xopenalex-snapshot
Are the Northern Andes a species pump for Neotropical birds? Phylogenetics and biogeography of a clade of Neotropical tanagers (Aves: Thraupini)
inferredcites →https://doi.org/10.1111/j.1365-2699.2010.02356.xopenalex-snapshot
Evaluating the potential causes of range limits of birds of the Colombian Andes
inferredcites →https://doi.org/10.1111/j.1365-2699.2012.02760.xopenalex-snapshot
Phylogeny and comparative phylogeography of Sclerurus (Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04380.xopenalex-snapshot
Mitochondrial DNA as a marker of molecular diversity: a reappraisal
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04594.xopenalex-snapshot
Linking the mitochondrial genotype to the organismal phenotype
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05304.xopenalex-snapshot
Diversification in Adelomyia hummingbirds follows Andean uplift
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05664.xopenalex-snapshot
The biogeography of mitochondrial and nuclear discordance in animals
inferredcites →https://doi.org/10.1111/j.1558-5646.1995.tb02308.xopenalex-snapshot
INFERRING PHYLOGENIES FROM mt DNA VARIATION: MITOCHONDRIAL-GENE TREES VERSUS NUCLEAR-GENE TREES
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00530.xopenalex-snapshot
PLUMAGE AND SONG DIFFERENCES MEDIATE SPECIES RECOGNITION BETWEEN INCIPIENT FLYCATCHER SPECIES OF THE SOLOMON ISLANDS
inferredcites →https://doi.org/10.1111/jav.01378openalex-snapshot
Molecular data and distribution dynamics indicate a recent and incomplete separation of manakins species of the genus Antilophia (Aves: Pipridae) in response to Holocene climate change
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In and out of Mesoamerica: temporal divergence of A maziliahummingbirds pre‐dates the orthodox account of the completion of the I sthmus of P anama
inferredcites →https://doi.org/10.1111/jbi.12317openalex-snapshot
The influence of the complex topography and dynamic history of the montane Neotropics on the evolutionary differentiation of a cloud forest bird ( Premnoplex brunnescens , Furnariidae)
inferredcites →https://doi.org/10.1111/jbi.12452openalex-snapshot
Biogeography of the Andean metaltail hummingbirds: contrasting evolutionary histories of tree line and habitat‐generalist clades
inferredcites →https://doi.org/10.1111/jbi.12506openalex-snapshot
At the passing gate: past introgression in the process of species formation betweenAmazilia violicepsandA. viridifronshummingbirds along the Mexican Transition Zone
inferredcites →https://doi.org/10.1111/jbi.13607openalex-snapshot
The flickering connectivity system of the north Andean páramos
inferredcites →https://doi.org/10.1111/mec.13203openalex-snapshot
Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance
inferredcites →https://doi.org/10.1111/mec.13475openalex-snapshot
The rate of adaptive evolution in animal mitochondria
inferredcites →https://doi.org/10.1111/mec.14114openalex-snapshot
Perpendicular axes of differentiation generated by mitochondrial introgression
inferredcites →https://doi.org/10.1111/mec.15049openalex-snapshot
Divergent mitochondrial lineages arose within a large, panmictic population of the Savannah sparrow (Passerculus sandwichensis)
inferredcites →https://doi.org/10.1146/annurev.es.18.110187.002421openalex-snapshot
INTRASPECIFIC PHYLOGEOGRAPHY: The Mitochondrial DNA Bridge Between Population Genetics and Systematics
inferredcites →https://doi.org/10.1186/1471-2148-11-38openalex-snapshot
Selection and geographic isolation influence hummingbird speciation: genetic, acoustic and morphological divergence in the wedge-tailed sabrewing (Campylopterus curvipennis)
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Continental phylogeography of an ecologically and morphologically diverse Neotropical songbird, Zonotrichia capensis
inferredcites →https://doi.org/10.1186/1471-2148-8-1openalex-snapshot
Prezygotic reproductive isolation between Saccharomyces cerevisiae and Saccharomyces paradoxus
inferredcites →https://doi.org/10.1186/1471-2164-12-35openalex-snapshot
Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination
inferredcites →https://doi.org/10.1186/s12862-015-0575-yopenalex-snapshot
New data from the Middle Jurassic of China shed light on the phylogeny and origin of the proboscis in the Mesopsychidae (Insecta: Mecoptera)
inferredcites →https://doi.org/10.1371/journal.pone.0026995openalex-snapshot
Conflict between Genetic and Phenotypic Differentiation: The Evolutionary History of a ‘Lost and Rediscovered’ Shorebird
inferredcites →https://doi.org/10.1371/journal.pone.0108345openalex-snapshot
Genetic Differentiation, Niche Divergence, and the Origin and Maintenance of the Disjunct Distribution in the Blossomcrown Anthocephala floriceps (Trochilidae)
inferredcites →https://doi.org/10.1642/0004-8038(2004)121[0001:mdamsf]2.0.co;2openalex-snapshot
MITOCHONDRIAL DATING AND MIXED SUPPORT FOR THE “2% RULE” IN BIRDS
inferredcites →https://doi.org/10.1642/0004-8038(2005)122[0403:pparmc]2.0.co;2openalex-snapshot
PATTERN, PROCESS, AND RIGOR MEET CLASSIFICATION
inferredcites →https://doi.org/10.1642/auk-15-51.1openalex-snapshot
Genomic approaches to understanding population divergence and speciation in birds
inferredcites →https://doi.org/10.1642/auk-16-49.1openalex-snapshot
A field ornithologist's guide to genomics: Practical considerations for ecology and conservation
inferredcites →https://doi.org/10.1642/auk-18-58.1openalex-snapshot
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inferredcites →https://doi.org/10.1642/auk-18-7.1openalex-snapshot
A flicker of hope: Genomic data distinguish Northern Flicker taxa despite low levels of divergence
inferredcites →https://doi.org/10.2307/4089331openalex-snapshot
Strong Diversification at the Treeline among Metallura Hummingbirds
inferredcites →https://doi.org/10.3109/19401736.2014.915533openalex-snapshot
The complete mitochondrial genome of the ruby-topaz hummingbird Chrysolampis mosquitus through Illumina sequencing
inferredcites →https://doi.org/10.3109/19401736.2015.1007352openalex-snapshot
Complete mitochondrial genome of the versicoloured emerald hummingbird Amazilia versicolor , a polymorphic species
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3897/zookeys.506.9553openalex-snapshot
A distinctive new subspecies of Scytalopus griseicollis (Aves, Passeriformes, Rhinocryptidae) from the northern Eastern Cordillera of Colombia and Venezuela
inferredcites →https://doi.org/10.5860/choice.45-2370openalex-snapshot
Speciation in birds
inferredcites →https://doi.org/10.7717/peerj.1556openalex-snapshot
Historical and current introgression in a Mesoamerican hummingbird species complex: a biogeographic perspective

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inferred← citeshttps://doi.org/10.1098/rsos.221603openalex-snapshot
Interspecific hybridization explains rapid gorget colour divergence inHeliodoxahummingbirds (Aves: Trochilidae)
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