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Mitochondrial substitution rates estimation for molecular clock analyses in modern birds based on full mitochondrial genomes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-030-87645-6openalex-snapshot

Paleogene Fossil Birds

inferredcites →https://doi.org/10.1007/bf02111234openalex-snapshot

Calibration of mitochondrial DNA evolution in geese

inferredcites →https://doi.org/10.1016/j.ympev.2015.02.002openalex-snapshot

Do missing data influence the accuracy of divergence-time estimation with BEAST?

inferredcites →https://doi.org/10.1016/j.ympev.2015.06.005openalex-snapshot

A molecular genetic time scale demonstrates Cretaceous origins and multiple diversification rate shifts within the order Galliformes (Aves)

inferredcites →https://doi.org/10.1016/j.ympev.2016.09.022openalex-snapshot

The origin and phylogenetic relationships of the New Zealand ravens

inferredcites →https://doi.org/10.1016/s0016-6995(00)80034-0openalex-snapshot

Charadriiform birds from the early Oligocene of Céreste (France) and the Middle Eocene of Messel (Hessen, Germany)

inferredcites →https://doi.org/10.1016/s1055-7903(03)00164-7openalex-snapshot

Calibration of galliform molecular clocks using multiple fossils and genetic partitions

inferredcites →https://doi.org/10.1017/cbo9781139095112openalex-snapshot

Bayesian Evolutionary Analysis with BEAST

inferredcites →https://doi.org/10.1038/nature15697openalex-snapshot

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

inferredcites →https://doi.org/10.1038/nature19417openalex-snapshot

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

inferredcites →https://doi.org/10.1073/pnas.76.4.1967openalex-snapshot

Rapid evolution of animal mitochondrial DNA.

inferredcites →https://doi.org/10.1080/00241160410006483openalex-snapshot

Geologic Time Scale 2004 – why, how, and where next!

inferredcites →https://doi.org/10.1080/10635150701435401openalex-snapshot

Evidence for Time Dependency of Molecular Rate Estimates

inferredcites →https://doi.org/10.1093/auk/104.2.270openalex-snapshot

Revision of “Falco” Ramenta Wetmore and the Neogene Evolution of the Falconidae

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/molbev/msi145openalex-snapshot

Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times

inferredcites →https://doi.org/10.1093/molbev/msi204openalex-snapshot

Molecular Mechanisms of Extensive Mitochondrial Gene Rearrangement in Plethodontid Salamanders

inferredcites →https://doi.org/10.1093/molbev/msl038openalex-snapshot

A Mitogenomic Timescale for Birds Detects Variable Phylogenetic Rates of Molecular Evolution and Refutes the Standard Molecular Clock

inferredcites →https://doi.org/10.1093/molbev/msl136openalex-snapshot

MtArt: A New Model of Amino Acid Replacement for Arthropoda

inferredcites →https://doi.org/10.1093/molbev/msl150openalex-snapshot

Paleontological Evidence to Date the Tree of Life

inferredcites →https://doi.org/10.1093/molbev/msr014openalex-snapshot

Evolution of Modern Birds Revealed by Mitogenomics: Timing the Radiation and Origin of Major Orders

inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/sysbio/syr107openalex-snapshot

Best Practices for Justifying Fossil Calibrations

inferredcites →https://doi.org/10.1098/rspb.1998.0317openalex-snapshot

Pleistocene phylogeographic effects on avian populations and the speciation process

inferredcites →https://doi.org/10.1098/rspb.2004.2803openalex-snapshot

Ice sheets promote speciation in boreal birds

inferredcites →https://doi.org/10.1098/rstb.2004.1523openalex-snapshot

Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil–based model selection

inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb00445.xopenalex-snapshot

NEW MITOCHONDRIAL DNA DATA AFFIRM THE IMPORTANCE OF PLEISTOCENE SPECIATION IN NORTH AMERICAN BIRDS

inferredcites →https://doi.org/10.1111/j.0908-8857.2004.03316.xopenalex-snapshot

Is there a universal mtDNA clock for birds?

inferredcites →https://doi.org/10.1111/j.0908-8857.2007.04168.xopenalex-snapshot

Calibrating molecular estimates of substitution rates and divergence times in birds

inferredcites →https://doi.org/10.1111/j.1095-8312.1985.tb02048.xopenalex-snapshot

Mitochondrial DNA and two perspectives on evolutionary genetics

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03737.xopenalex-snapshot

Mitochondrial DNA under siege in avian phylogeography

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03742.xopenalex-snapshot

Calibrating the avian molecular clock

inferredcites →https://doi.org/10.1111/j.1474-919x.2005.00421.xopenalex-snapshot

New trogons from the early Tertiary of Germany

inferredcites →https://doi.org/10.1111/jav.00766openalex-snapshot

Calibrating the molecular clock beyond cytochrome b : assessing the evolutionary rate of COI in birds

inferredcites →https://doi.org/10.1111/jav.00928openalex-snapshot

Mitochondrial rate variation among lineages of passerine birds

inferredcites →https://doi.org/10.1111/mec.12953openalex-snapshot

Molecular‐clock methods for estimating evolutionary rates and timescales

inferredcites →https://doi.org/10.1111/mec.13450openalex-snapshot

Time‐dependent estimates of molecular evolutionary rates: evidence and causes

inferredcites →https://doi.org/10.1111/mec.13780openalex-snapshot

Body mass‐corrected molecular rate for bird mitochondrial DNA

inferredcites →https://doi.org/10.1126/science.1096856openalex-snapshot

Old World Fossil Record of Modern-Type Hummingbirds

inferredcites →https://doi.org/10.1126/science.277.5332.1666openalex-snapshot

The Importance of Recent Ice Ages in Speciation: A Failed Paradigm

inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot

BEAST: Bayesian evolutionary analysis by sampling trees

inferredcites →https://doi.org/10.1186/s12862-014-0163-6openalex-snapshot

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pone.0001615openalex-snapshot

The Effect of Inappropriate Calibration: Three Case Studies in Molecular Ecology

inferredcites →https://doi.org/10.1642/0004-8038(2004)121[0001:mdamsf]2.0.co;2openalex-snapshot

MITOCHONDRIAL DATING AND MIXED SUPPORT FOR THE “2% RULE” IN BIRDS

inferredcites →https://doi.org/10.26879/373openalex-snapshot

Phylogenetically vetted and stratigraphically constrained fossil calibrations within Aves

inferredcites →https://doi.org/10.26879/483openalex-snapshot

Five well-supported fossil calibrations within the "Waterbird" assemblage (Tetrapoda, Aves)

inferredcites →https://doi.org/10.26879/529openalex-snapshot

Dinosaur tracks from the Langenberg Quarry (Late Jurassic, Germany) reconstructed with historical photogrammetry: Evidence for large theropods soon after insular dwarfism

inferredcites →https://doi.org/10.3732/ajb.1200416openalex-snapshot

Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

inferredcites →https://doi.org/10.5281/zenodo.13506717openalex-snapshot

The Early Eocene bird Gallinuloides wyomingensis -a stem group representative of Galliformes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-030-60181-2_7openalex-snapshot

Clock Models for Evolution of Discrete Phenotypic Characters

inferred← citeshttps://doi.org/10.1093/biolinnean/blad013openalex-snapshot

Mito-nuclear discordance in the phenotypically variable Andean hummingbirds Coeligena bonapartei and Coeligena helianthea (Trochilidae)

inferred← citeshttps://doi.org/10.1101/2020.04.14.041723openalex-snapshot

Complete mitochondrial genomes do not distinguish phenotypically distinct lineages of Andean Coeligena hummingbirds

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