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Evolutionary Genetic Species Detected in Prokaryotes by Applying the K/θ Ratio to DNA Sequences

https://doi.org/10.1101/2020.04.27.062828

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/1-4020-4408-9_1openalex-snapshot

Walter Koste - a K-strategist? A laudatio

inferredcites →https://doi.org/10.1007/1-4020-4408-9_3openalex-snapshot

Speciation and selection without sex

inferredcites →https://doi.org/10.1007/978-1-4615-2381-9openalex-snapshot

Molecular Markers, Natural History and Evolution

inferredcites →https://doi.org/10.1007/978-1-60327-853-9_21openalex-snapshot

Population Genomics and the Bacterial Species Concept

inferredcites →https://doi.org/10.1016/s0966-842x(00)01791-1openalex-snapshot

Intraspecies variation in bacterial genomes: the need for a species genome concept

inferredcites →https://doi.org/10.1016/s0966-842x(01)02133-3openalex-snapshot

When does a clone deserve a name? A perspective on bacterial species based on population genetics

inferredcites →https://doi.org/10.1038/nature12352openalex-snapshot

Insights into the phylogeny and coding potential of microbial dark matter

inferredcites →https://doi.org/10.1038/s41467-018-07641-9openalex-snapshot

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

inferredcites →https://doi.org/10.1046/j.1420-9101.2003.00612.xopenalex-snapshot

A molecular phylogeny of enteric bacteria and implications for a bacterial species concept

inferredcites →https://doi.org/10.1073/pnas.0409727102openalex-snapshot

Genomic insights that advance the species definition for prokaryotes

inferredcites →https://doi.org/10.1073/pnas.0712205105openalex-snapshot

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

inferredcites →https://doi.org/10.1073/pnas.0808945106openalex-snapshot

Biogeography of the Sulfolobus islandicus pan-genome

inferredcites →https://doi.org/10.1073/pnas.76.10.5269openalex-snapshot

Mathematical model for studying genetic variation in terms of restriction endonucleases.

inferredcites →https://doi.org/10.1080/10635150600852011openalex-snapshot

Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects

inferredcites →https://doi.org/10.1086/386552openalex-snapshot

What Is Speciation and How Should We Study It?

inferredcites →https://doi.org/10.1093/bioinformatics/btt499openalex-snapshot

A general species delimitation method with applications to phylogenetic placements

inferredcites →https://doi.org/10.1093/oso/9780198749745.001.0001openalex-snapshot

The Evolutionary Biology of Species

inferredcites →https://doi.org/10.1098/rsbl.2009.0091openalex-snapshot

Inferring evolutionarily significant units of bacterial diversity from broad environmental surveys of single-locus data

inferredcites →https://doi.org/10.1098/rstb.2006.1918openalex-snapshot

Towards a conceptual and operational union of bacterial systematics, ecology, and evolution

inferredcites →https://doi.org/10.1098/rstb.2006.1919openalex-snapshot

Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function

inferredcites →https://doi.org/10.1099/00207713-52-3-1043openalex-snapshot

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

inferredcites →https://doi.org/10.1099/ijs.0.02360-0openalex-snapshot

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

inferredcites →https://doi.org/10.1099/ijs.0.64483-0openalex-snapshot

DNA–DNA hybridization values and their relationship to whole-genome sequence similarities

inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb01231.xopenalex-snapshot

PERSPECTIVE: GENE DIVERGENCE, POPULATION DIVERGENCE, AND THE VARIANCE IN COALESCENCE TIME IN PHYLOGEOGRAPHIC STUDIES

inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb01467.xopenalex-snapshot

MATHEMATICAL CONSEQUENCES OF THE GENEALOGICAL SPECIES CONCEPT

inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00355.xopenalex-snapshot

THE SHAPES OF NEUTRAL GENE GENEALOGIES IN TWO SPECIES: PROBABILITIES OF MONOPHYLY, PARAPHYLY, AND POLYPHYLY IN A COALESCENT MODEL

inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00394.xopenalex-snapshot

DIVERSIFICATION IN SEXUAL AND ASEXUAL ORGANISMS

inferredcites →https://doi.org/10.1111/j.1096-3642.2010.00674.xopenalex-snapshot

Integrating DNA and morphological taxonomy to describe diversity in poorly studied microscopic animals: new species of the genus Abrochtha Bryce, 1910 (Rotifera: Bdelloidea: Philodinavidae)

inferredcites →https://doi.org/10.1111/j.1558-5646.1951.tb02788.xopenalex-snapshot

THE SPECIES CONCEPT

inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00023.xopenalex-snapshot

STATISTICAL TESTS FOR TAXONOMIC DISTINCTIVENESS FROM OBSERVATIONS OF MONOPHYLY

inferredcites →https://doi.org/10.1126/science.1131370openalex-snapshot

Microfluidic Digital PCR Enables Multigene Analysis of Individual Environmental Bacteria

inferredcites →https://doi.org/10.1126/science.1157890openalex-snapshot

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

inferredcites →https://doi.org/10.1146/annurev.micro.59.030804.121325openalex-snapshot

Multilocus Sequence Typing of Bacteria

inferredcites →https://doi.org/10.1371/journal.pgen.1003345openalex-snapshot

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

inferredcites →https://doi.org/10.1371/journal.pone.0010609openalex-snapshot

Using Population Genetic Theory and DNA Sequences for Species Detection and Identification in Asexual Organisms

inferredcites →https://doi.org/10.1371/journal.pone.0039844openalex-snapshot

Cryptic Species in Putative Ancient Asexual Darwinulids (Crustacea, Ostracoda)

inferredcites →https://doi.org/10.1371/journal.pone.0052544openalex-snapshot

Species Detection and Identification in Sexual Organisms Using Population Genetic Theory and DNA Sequences

inferredcites →https://doi.org/10.1554/0014-3820(2000)054[1839:pgdpda]2.0.co;2openalex-snapshot

PERSPECTIVE: GENE DIVERGENCE, POPULATION DIVERGENCE, AND THE VARIANCE INCOALESCENCE TIME IN PHYLOGEOGRAPHIC STUDIES

inferredcites →https://doi.org/10.3390/life5010050openalex-snapshot

Does a Barcoding Gap Exist in Prokaryotes? Evidences from Species Delimitation in Cyanobacteria

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-0716-3581-0_24openalex-snapshot

A Measure of the DNA Barcode Gap for Applied and Basic Research

inferred← citeshttps://doi.org/10.1101/2021.08.17.454531openalex-snapshot

KoT: an automatic implementation of the K/θ method for species delimitation

inferred← citeshttps://doi.org/10.1101/2023.07.13.548520openalex-snapshot

Geographic population structure and distinct population dynamics of globally abundant freshwater bacteria

inferred← citeshttps://doi.org/10.1101/590836openalex-snapshot

Distinct biogeographic origins of androgenetic Corbicula lineages followed by genetic captures

inferred← citeshttps://doi.org/10.24072/pcjournal.180openalex-snapshot

Substantial genetic mixing among sexual and androgenetic lineages within the clam genus Corbicula

inferred← citeshttps://doi.org/10.3390/foods14101756openalex-snapshot

Incorporation of Herbal Essential Oils in Chicken Sausages and Their Effects on Microbial Stability and Product Quality

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