On the public citation graph
Geographic population structure and distinct population dynamics of globally abundant freshwater bacteria
0 signed · 60 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/imt2.107openalex-snapshot
Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp
inferredcites →https://doi.org/10.1007/bf02111283openalex-snapshot
Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes
inferredcites →https://doi.org/10.1007/s00248-012-0088-9openalex-snapshot
Free Tropospheric Transport of Microorganisms from Asia to North America
inferredcites →https://doi.org/10.1016/j.tim.2014.02.006openalex-snapshot
Ordering microbial diversity into ecologically and genetically cohesive units
inferredcites →https://doi.org/10.1038/ismej.2013.225openalex-snapshot
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
inferredcites →https://doi.org/10.1038/ismej.2015.241openalex-snapshot
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
inferredcites →https://doi.org/10.1038/ismej.2017.156openalex-snapshot
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
inferredcites →https://doi.org/10.1038/ng.2744openalex-snapshot
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrmicro1236openalex-snapshot
Re-evaluating prokaryotic species
inferredcites →https://doi.org/10.1038/nrmicro2235openalex-snapshot
Explaining microbial population genomics through phage predation
inferredcites →https://doi.org/10.1038/s41396-017-0001-0openalex-snapshot
Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
inferredcites →https://doi.org/10.1038/s41396-018-0092-2openalex-snapshot
Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
inferredcites →https://doi.org/10.1038/s41396-018-0332-5openalex-snapshot
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes
inferredcites →https://doi.org/10.1038/s41396-019-0471-3openalex-snapshot
Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae
inferredcites →https://doi.org/10.1038/s41396-021-01069-8openalex-snapshot
The rates of global bacterial and archaeal dispersal
inferredcites →https://doi.org/10.1038/s41467-018-07641-9openalex-snapshot
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
inferredcites →https://doi.org/10.1038/s41467-021-24129-1openalex-snapshot
Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species”
inferredcites →https://doi.org/10.1038/s41587-020-00797-0openalex-snapshot
inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
inferredcites →https://doi.org/10.1038/s41597-021-00910-1openalex-snapshot
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds
inferredcites →https://doi.org/10.1038/s41598-021-92429-zopenalex-snapshot
Whimbrel populations differ in trans-atlantic pathways and cyclone encounters
inferredcites →https://doi.org/10.1038/s43247-022-00441-6openalex-snapshot
Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans
inferredcites →https://doi.org/10.1073/pnas.1000668107openalex-snapshot
Bacteria dispersal by hitchhiking on zooplankton
inferredcites →https://doi.org/10.1073/pnas.1212089110openalex-snapshot
Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications
inferredcites →https://doi.org/10.1073/pnas.1612346114openalex-snapshot
Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow
inferredcites →https://doi.org/10.1073/pnas.37.3.146openalex-snapshot
Periodic Selection in Escherichia Coli
inferredcites →https://doi.org/10.1093/bioinformatics/btac672openalex-snapshot
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btv033openalex-snapshot
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/gbe/evab019openalex-snapshot
Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria
inferredcites →https://doi.org/10.1093/genetics/138.4.993openalex-snapshot
Detecting selective sweeps in naturally occurring Escherichia coli.
inferredcites →https://doi.org/10.1093/gigascience/giab008openalex-snapshot
Twelve years of SAMtools and BCFtools
inferredcites →https://doi.org/10.1093/nar/gkab776openalex-snapshot
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
inferredcites →https://doi.org/10.1093/ornithology/ukab086openalex-snapshot
The Pacific as the world’s greatest theater of bird migration: Extreme flights spark questions about physiological capabilities, behavior, and the evolution of migratory pathways
inferredcites →https://doi.org/10.1098/rstb.2006.1920openalex-snapshot
The bacterial species definition in the genomic era
inferredcites →https://doi.org/10.1099/ijsem.0.003130openalex-snapshot
Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north–south cross-section across Europe
inferredcites →https://doi.org/10.1099/ijsem.0.005408openalex-snapshot
Fourteen new Polynucleobacter species: P. brandtiae sp. nov., P. kasalickyi sp. nov., P. antarcticus sp. nov., P. arcticus sp. nov., P. tropicus sp. nov., P. bastaniensis sp. nov., P. corsicus sp. nov., P. finlandensis sp. nov., P. ibericus sp. nov., P. hallstattensis sp. nov., P. alcilacus sp.…
inferredcites →https://doi.org/10.1101/2020.03.25.999755openalex-snapshot
Revealing ecologically coherent population structure of uncultivated bacterioplankton with POGENOM
inferredcites →https://doi.org/10.1101/2020.04.27.062828openalex-snapshot
Evolutionary Genetic Species Detected in Prokaryotes by Applying the K/θ Ratio to DNA Sequences
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1755-0998.13444openalex-snapshot
Opening a next‐generation black box: Ecological trends for hundreds of species‐like taxa uncovered within a single bacterial >99% 16S rRNA operational taxonomic unit
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02668.xopenalex-snapshot
Bacterial species may exist, metagenomics reveal
inferredcites →https://doi.org/10.1111/j.1558-5646.1960.tb03113.xopenalex-snapshot
THE EVOLUTIONARY DYNAMICS OF COMPLEX POLYMORPHISMS,,
inferredcites →https://doi.org/10.1111/mec.16379openalex-snapshot
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium
inferredcites →https://doi.org/10.1126/science.1218389openalex-snapshot
In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids
inferredcites →https://doi.org/10.1126/science.1254421openalex-snapshot
Biogeographic patterns in ocean microbes emerge in a neutral agent-based model
inferredcites →https://doi.org/10.1128/cmr.00039-06openalex-snapshot
Atmospheric Movement of Microorganisms in Clouds of Desert Dust and Implications for Human Health
inferredcites →https://doi.org/10.1128/msystems.00316-20openalex-snapshot
Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts
inferredcites →https://doi.org/10.1186/1745-6150-4-35openalex-snapshot
Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria
inferredcites →https://doi.org/10.1186/s12864-017-4199-zopenalex-snapshot
Genomic divergence and cohesion in a species of pelagic freshwater bacteria
inferredcites →https://doi.org/10.1186/s40168-018-0563-8openalex-snapshot
Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi
inferredcites →https://doi.org/10.1186/s40168-019-0752-0openalex-snapshot
Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics
inferredcites →https://doi.org/10.1534/genetics.113.157172openalex-snapshot
Inference of the Properties of the Recombination Process from Whole Bacterial Genomes
inferredcites →https://doi.org/10.2307/2844752openalex-snapshot
A System of World Mammal Faunal Regions. I. Logical and Statistical Derivation of the Regions
inferredcites →https://doi.org/10.3121/cmr.1.1.5openalex-snapshot
Birds, Migration and Emerging Zoonoses: West Nile Virus, Lyme Disease, Influenza A and Enteropathogens
inferredcites →https://doi.org/10.3389/fmicb.2018.00773openalex-snapshot
Atmospheric Precipitations, Hailstone and Rainwater, as a Novel Source of Streptomyces Producing Bioactive Natural Products
inferredcites →https://doi.org/10.4319/lo.2000.45.6.1320openalex-snapshot
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
inferredcites →https://doi.org/10.5962/bhl.title.82303openalex-snapshot
On the origin of species by means of natural selection, or, The preservation of favoured races in the struggle for life
inferredcites →https://doi.org/10.7717/peerj.7359openalex-snapshot
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.