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Anoxygenic phototrophic Chloroflexota member uses a Type I reaction center

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Discoveries in Photosynthesis
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The FMO protein
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Thinking about the evolution of photosynthesis
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Chlorosomes: Antenna Organelles in Photosynthetic Green Bacteria
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A Panoply of Phototrophs: An Overview of the Thermophilic Chlorophototrophs of the Microbial Mats of Alkaline Siliceous Hot Springs in Yellowstone National Park, WY, USA
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The Phototrophic Way of Life
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The Family Chromatiaceae
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The Family Chlorobiaceae
inferredcites →https://doi.org/10.1007/978-3-642-38954-2_165openalex-snapshot
The Phylum Chloroflexi, the Family Chloroflexaceae, and the Related Phototrophic Families Oscillochloridaceae and Roseiflexaceae
inferredcites →https://doi.org/10.1007/978-94-007-1533-2openalex-snapshot
Functional Genomics and Evolution of Photosynthetic Systems
inferredcites →https://doi.org/10.1007/978-94-007-1533-2_3openalex-snapshot
Comparative and Functional Genomics of Anoxygenic Green Bacteria from the Taxa Chlorobi, Chloroflexi, and Acidobacteria
inferredcites →https://doi.org/10.1007/978-94-011-0227-8openalex-snapshot
The Molecular Biology of Cyanobacteria
inferredcites →https://doi.org/10.1007/978-94-011-0227-8_14openalex-snapshot
The Biochemistry and Molecular Regulation of Carbon Dioxide Metabolism in Cyanobacteria
inferredcites →https://doi.org/10.1007/bf00346940openalex-snapshot
The effect of inhibitors of photosynthesis on zooxanthellae in corals and other marine invertebrates
inferredcites →https://doi.org/10.1007/bf00415602openalex-snapshot
Heliobacterium chlorum, an anoxygenic brownish-green photosynthetic bacterium containing a ?new? form of bacteriochlorophyll
inferredcites →https://doi.org/10.1007/bf00446302openalex-snapshot
A phototrophic gliding filamentous bacterium of hot springs, Chloroflexus aurantiacus, gen. and sp. nov.
inferredcites →https://doi.org/10.1007/bf02184143openalex-snapshot
Oscillochloris trichoides neotype strain DG-6
inferredcites →https://doi.org/10.1007/s00203-003-0615-7openalex-snapshot
Phylogenetic and physiological characterization of a filamentous anoxygenic photoautotrophic bacterium ?Candidatus Chlorothrix halophila? gen. nov., sp. nov., recovered from hypersaline microbial mats
inferredcites →https://doi.org/10.1007/s00203-004-0718-9openalex-snapshot
Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria
inferredcites →https://doi.org/10.1007/s002030050453openalex-snapshot
Quinones in chlorosomes of green sulfur bacteria and their role in the redox-dependent fluorescence studied in chlorosome-like bacteriochlorophyll c aggregates
inferredcites →https://doi.org/10.1007/s11120-005-3647-9openalex-snapshot
The Ultrastructure of Chlorobium tepidum Chlorosomes Revealed by Electron Microscopy
inferredcites →https://doi.org/10.1007/s11120-009-9519-yopenalex-snapshot
A model of the protein–pigment baseplate complex in chlorosomes of photosynthetic green bacteria
inferredcites →https://doi.org/10.1007/s11120-013-9869-3openalex-snapshot
Chlorosome antenna complexes from green photosynthetic bacteria
inferredcites →https://doi.org/10.1016/0022-5193(67)90079-3openalex-snapshot
On the origin of mitosing cells
inferredcites →https://doi.org/10.1016/j.bbabio.2008.04.026openalex-snapshot
The Rieske/cytochrome b complex of Heliobacteria
inferredcites →https://doi.org/10.1016/j.bpj.2010.07.068openalex-snapshot
SANS Investigation of the Photosynthetic Machinery of Chloroflexus aurantiacus
inferredcites →https://doi.org/10.1016/j.febslet.2007.01.078openalex-snapshot
Hypothesis on chlorosome biogenesis in green photosynthetic bacteria
inferredcites →https://doi.org/10.1016/j.heliyon.2018.e00548openalex-snapshot
Early Archean origin of heterodimeric Photosystem I
inferredcites →https://doi.org/10.1016/j.jbiotec.2017.06.1198openalex-snapshot
25 years of serving the community with ribosomal RNA gene reference databases and tools
inferredcites →https://doi.org/10.1016/j.jmb.2015.11.006openalex-snapshot
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
inferredcites →https://doi.org/10.1016/j.tim.2009.12.010openalex-snapshot
Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0883-2927(99)00097-9openalex-snapshot
The ferrozine method revisited: Fe(II)/Fe(III) determination in natural waters
inferredcites →https://doi.org/10.1021/ac60289a016openalex-snapshot
Ferrozine---a new spectrophotometric reagent for iron
inferredcites →https://doi.org/10.1021/acs.jproteome.8b00716openalex-snapshot
Unipept 4.0: Functional Analysis of Metaproteome Data
inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
inferredcites →https://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferredcites →https://doi.org/10.1038/nmeth.3213openalex-snapshot
The I-TASSER Suite: protein structure and function prediction
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nrmicro2834openalex-snapshot
Distribution, formation and regulation of gas vesicles
inferredcites →https://doi.org/10.1038/s41396-020-0725-0openalex-snapshot
Anoxygenic photosynthesis and iron–sulfur metabolic potential of Chlorobia populations from seasonally anoxic Boreal Shield lakes
inferredcites →https://doi.org/10.1038/s41587-019-0209-9openalex-snapshot
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
inferredcites →https://doi.org/10.1038/s41592-020-00971-xopenalex-snapshot
metaFlye: scalable long-read metagenome assembly using repeat graphs
inferredcites →https://doi.org/10.1038/s43705-022-00201-9openalex-snapshot
Vulcanimicrobium alpinus gen. nov. sp. nov., the first cultivated representative of the candidate phylum “Eremiobacterota”, is a metabolically versatile aerobic anoxygenic phototroph
inferredcites →https://doi.org/10.1038/srep46708openalex-snapshot
Millions of Boreal Shield Lakes can be used to Probe Archaean Ocean Biogeochemistry
inferredcites →https://doi.org/10.1073/pnas.0805108105openalex-snapshot
Eutrophication of lakes cannot be controlled by reducing nitrogen input: Results of a 37-year whole-ecosystem experiment
inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
inferredcites →https://doi.org/10.1073/pnas.1400295111openalex-snapshot
Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes
inferredcites →https://doi.org/10.1073/pnas.1603330113openalex-snapshot
Evidence for a cysteine-mediated mechanism of excitation energy regulation in a photosynthetic antenna complex
inferredcites →https://doi.org/10.1073/pnas.1710798114openalex-snapshot
Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi
inferredcites →https://doi.org/10.1073/pnas.2216734120openalex-snapshot
Cryo-EM structure of the whole photosynthetic reaction center apparatus from the green sulfur bacterium Chlorobaculum tepidum
inferredcites →https://doi.org/10.1074/jbc.rev120.006194openalex-snapshot
Biosynthesis of the modified tetrapyrroles—the pigments of life
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btaa900openalex-snapshot
NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv638openalex-snapshot
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
inferredcites →https://doi.org/10.1093/femsec/fiz161openalex-snapshot
Freshwater microbial community diversity in a rapidly changing High Arctic watershed
inferredcites →https://doi.org/10.1093/femsle/fnz043openalex-snapshot
‘Candidatus Viridilinea mediisalina’, a novel phototrophic Chloroflexi bacterium from a Siberian soda lake
inferredcites →https://doi.org/10.1093/femsre/fux056openalex-snapshot
A physiological perspective on the origin and evolution of photosynthesis
inferredcites →https://doi.org/10.1093/gigascience/giab006openalex-snapshot
AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology
inferredcites →https://doi.org/10.1093/molbev/msl079openalex-snapshot
Conservation of Distantly Related Membrane Proteins: Photosynthetic Reaction Centers Share a Common Structural Core
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msx148openalex-snapshot
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkv1189openalex-snapshot
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/nar/gkw569openalex-snapshot
NCBI prokaryotic genome annotation pipeline
inferredcites →https://doi.org/10.1093/nar/gkz246openalex-snapshot
AnnoTree: visualization and exploration of a functionally annotated microbial tree of life
inferredcites →https://doi.org/10.1098/rsob.180246openalex-snapshot
Thinking twice about the evolution of photosynthesis
inferredcites →https://doi.org/10.1098/rstb.2008.0023openalex-snapshot
Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms
inferredcites →https://doi.org/10.1099/00207713-28-2-283openalex-snapshot
Rhodocyclus purpureus gen. nov. and sp. nov., a Ring-Shaped, Vitamin B12-Requiring Member of the Family Rhodospirillaceae
inferredcites →https://doi.org/10.1099/00207713-45-4-676openalex-snapshot
Chloroflexus aggregans sp. nov., a Filamentous Phototrophic Bacterium Which Forms Dense Cell Aggregates by Active Gliding Movement
inferredcites →https://doi.org/10.1099/00207713-49-4-1615openalex-snapshot
Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
inferredcites →https://doi.org/10.1099/ijs.0.01990-0openalex-snapshot
Tetrasphaera elongata sp. nov., a polyphosphate-accumulating bacterium isolated from activated sludge
inferredcites →https://doi.org/10.1101/139212openalex-snapshot
Novel chemolithotrophic and anoxygenic phototrophic genomes extracted from ice-covered boreal lakes
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1101/gr.260380.119openalex-snapshot
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
inferredcites →https://doi.org/10.1111/1462-2920.13023openalex-snapshot
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
inferredcites →https://doi.org/10.1111/j.1574-6941.2008.00592.xopenalex-snapshot
Physiology of phototrophic iron(II)-oxidizing bacteria: implications for modern and ancient environments
inferredcites →https://doi.org/10.1126/science.1143236openalex-snapshot
Candidatus Chloracidobacterium thermophilum: An Aerobic Phototrophic Acidobacterium
inferredcites →https://doi.org/10.1126/science.281.5374.237openalex-snapshot
Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components
inferredcites →https://doi.org/10.1126/science.aan5611openalex-snapshot
Structure of a symmetric photosynthetic reaction center–photosystem
inferredcites →https://doi.org/10.1128/aem.01451-14openalex-snapshot
Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles
inferredcites →https://doi.org/10.1128/aem.02772-10openalex-snapshot
Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads
inferredcites →https://doi.org/10.1128/mbio.00166-16openalex-snapshot
Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis
inferredcites →https://doi.org/10.1134/s0026261706020135openalex-snapshot
Phylogeny of anoxygenic filamentous phototrophic bacteria of the family Oscillochloridaceae as inferred from comparative analyses of the rrs, cbbL, and nifH genes
inferredcites →https://doi.org/10.1134/s0026261714060083openalex-snapshot
Candidatus ‘Chloroploca asiatica’ gen. nov., sp. nov., a new mesophilic filamentous anoxygenic phototrophic bacterium
inferredcites →https://doi.org/10.1139/f71-028openalex-snapshot
Geography and Bathymetry of Selected Lake Basins, Experimental Lakes Area, Northwestern Ontario
inferredcites →https://doi.org/10.1139/f71-029openalex-snapshot
Light, Temperature, and Oxygen Regimes of Selected Lakes in the Experimental Lakes Area, Northwestern Ontario
inferredcites →https://doi.org/10.1139/f71-030openalex-snapshot
Preliminary Chemical Characterization of Waters in the Experimental Lakes Area, Northwestern Ontario
inferredcites →https://doi.org/10.1139/f74-110openalex-snapshot
Experimental Lakes Area: Whole-Lake Experiments in Eutrophication
inferredcites →https://doi.org/10.1146/annurev-arplant-042110-103811openalex-snapshot
Evolution of Photosynthesis
inferredcites →https://doi.org/10.1146/annurev-arplant-042817-040500openalex-snapshot
Diversity of Chlorophototrophic Bacteria Revealed in the Omics Era
inferredcites →https://doi.org/10.1146/annurev-earth-060313-054810openalex-snapshot
Evolution of Oxygenic Photosynthesis
inferredcites →https://doi.org/10.1186/1471-2105-11-1openalex-snapshot
Detection of gene pathways with predictive power for breast cancer prognosis
inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot
Removing Noise From Pyrosequenced Amplicons
inferredcites →https://doi.org/10.1186/1471-2164-12-334openalex-snapshot
Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus
inferredcites →https://doi.org/10.1186/s12859-020-03585-4openalex-snapshot
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
inferredcites →https://doi.org/10.1186/s12915-014-0111-3openalex-snapshot
Dynamic response of RNA editing to temperature in Drosophila
inferredcites →https://doi.org/10.1186/s13059-015-0849-0openalex-snapshot
Circlator: automated circularization of genome assemblies using long sequencing reads
inferredcites →https://doi.org/10.1186/s40168-018-0470-zopenalex-snapshot
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot
Accelerated Profile HMM Searches
inferredcites →https://doi.org/10.1371/journal.pcbi.1007981openalex-snapshot
The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies
inferredcites →https://doi.org/10.1371/journal.pcbi.1009802openalex-snapshot
Polypolish: Short-read polishing of long-read bacterial genome assemblies
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.3354/ame01315openalex-snapshot
Contributions of anoxygenic and oxygenic phototrophy and chemolithotrophy to carbon and oxygen fluxes in aquatic environments
inferredcites →https://doi.org/10.3389/fmicb.2013.00291openalex-snapshot
FunGene: the functional gene pipeline and repository
inferredcites →https://doi.org/10.3389/fmicb.2018.00260openalex-snapshot
Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer
inferredcites →https://doi.org/10.3389/fmicb.2020.00037openalex-snapshot
FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies
inferredcites →https://doi.org/10.4056/sigs.2194987openalex-snapshot
Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)
inferredcites →https://doi.org/10.5962/bhl.title.58475openalex-snapshot
Die infusionsthierchen als vollkommene organismen. Ein blick in das tiefere organische leben der natur
inferredcites →https://doi.org/10.7717/peerj.7359openalex-snapshot
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11120-021-00857-9openalex-snapshot
Recent advances in the structural diversity of reaction centers
inferred← citeshttps://doi.org/10.1038/s41467-022-35460-6openalex-snapshot
Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c
inferred← citeshttps://doi.org/10.1073/pnas.2216734120openalex-snapshot
Cryo-EM structure of the whole photosynthetic reaction center apparatus from the green sulfur bacterium Chlorobaculum tepidum
inferred← citeshttps://doi.org/10.1088/1755-1315/818/1/012012openalex-snapshot
Filamentous anoxygenic phototrophic bacteria in water bodies of Middle and Lower Volga basin (European Russia): an overview
inferred← citeshttps://doi.org/10.1101/2020.09.14.296780openalex-snapshot
Methylotrophy, alkane-degradation, and pigment production as defining features of the globally distributed yet-uncultured phylum Binatota
inferred← citeshttps://doi.org/10.1101/2021.08.23.457424openalex-snapshot
The Chloroflexi supergroup is metabolically diverse and representatives have novel genes for non-photosynthesis based CO 2 fixation
inferred← citeshttps://doi.org/10.1111/1462-2920.15614openalex-snapshot
Genomic characterization of three novel Desulfobacterota classes expand the metabolic and phylogenetic diversity of the phylum
inferred← citeshttps://doi.org/10.1111/1462-2920.16313openalex-snapshot
Adaptive genetic traits in pelagic freshwater microbes
inferred← citeshttps://doi.org/10.1128/mbio.00985-21openalex-snapshot
Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities
inferred← citeshttps://doi.org/10.1128/spectrum.01465-21openalex-snapshot
Temperature and Geographic Location Impact the Distribution and Diversity of Photoautotrophic Gene Variants in Alkaline Yellowstone Hot Springs
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1484102/v1openalex-snapshot
Structure of homodimeric RC with cytochromes c bound from Acidobacteria
inferred← citeshttps://doi.org/10.3390/microorganisms10071288openalex-snapshot
Proteomic Time-Course Analysis of the Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus aurantiacus, during the Transition from Respiration to Phototrophy
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