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The Impact of Pf Bacteriophages on the Fitness of Pseudomonas aeruginosa ; A Mathematical Modeling Approach

https://doi.org/10.1101/2020.08.30.272203
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The changing epidemiology of cystic fibrosis
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Analysis of deterministic and stochastic mathematical models with resistant bacteria and bacteria debris for bacteriophage dynamics
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Filamentous Bacteriophage Promote Biofilm Assembly and Function
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Ordered phases of filamentous viruses
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The logistic (Verhulst) model for sigmoid microbial growth curves revisited
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Antibiotic resistance of bacterial biofilms
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The impact of pulmonary diseases on the fate of inhaled medicines—A review
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Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation?
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Effectiveness of a stepwise Pseudomonas aeruginosa eradication protocol in children with cystic fibrosis
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ECFS best practice guidelines: the 2018 revision
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Bacterial fitness shapes the population dynamics of antibiotic-resistant and -susceptible bacteria in a model of combined antibiotic and anti-virulence treatment
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Prevalence of Pf1-like (pro)phage genetic elements among Pseudomonas aeruginosa isolates
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Filamentous bacteriophage delays healing of Pseudomonas-infected wounds
inferredcites →https://doi.org/10.1016/s0954-6111(05)80348-8openalex-snapshot
The quantitative distribution of nebulized antibiotic in the lung in cystic fibrosis
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and the in vitroand in vivo biofilm mode of growth
inferredcites →https://doi.org/10.1016/s1569-1993(17)30463-0openalex-snapshot
99 Pf bacteriophage (Pf) in Pseudomonas aeruginosa (Pa) biofilms is associated with increased elastase in the sputum of patients with cystic fibrosis (CF)
inferredcites →https://doi.org/10.1038/35101627openalex-snapshot
Gene expression in Pseudomonas aeruginosa biofilms
inferredcites →https://doi.org/10.1038/ismej.2008.109openalex-snapshot
The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage
inferredcites →https://doi.org/10.1038/s41564-019-0510-xopenalex-snapshot
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
inferredcites →https://doi.org/10.1056/nejm199901073400104openalex-snapshot
Intermittent Administration of Inhaled Tobramycin in Patients with Cystic Fibrosis
inferredcites →https://doi.org/10.1067/mpd.2001.112897openalex-snapshot
Clinical outcome after early Pseudomonas aeruginosa infection in cystic fibrosis
inferredcites →https://doi.org/10.1073/pnas.1101595108openalex-snapshot
Statistical structure of host–phage interactions
inferredcites →https://doi.org/10.1073/pnas.1917726117openalex-snapshot
Phage liquid crystalline droplets form occlusive sheaths that encapsulate and protect infectious rod-shaped bacteria
inferredcites →https://doi.org/10.1089/jamp.2011.0916openalex-snapshot
Aerosol Deposition in Health and Disease
inferredcites →https://doi.org/10.1089/jamp.2011.0942openalex-snapshot
Sputum Tobramycin Concentrations in Cystic Fibrosis Patients with Repeated Administration of Inhaled Tobramycin
inferredcites →https://doi.org/10.1093/jac/25.4.585openalex-snapshot
Susceptibility of bacterial biofilms to tobramycin: role of specific growth rate and phase in the division cycle
inferredcites →https://doi.org/10.1093/jac/dkn059openalex-snapshot
Biofilm penetration, triggered release and in vivo activity of inhaled liposomal amikacin in chronic Pseudomonas aeruginosa lung infections
inferredcites →https://doi.org/10.1093/jac/dkn554openalex-snapshot
Functional relationship between bacterial cell density and the efficacy of antibiotics
inferredcites →https://doi.org/10.1093/nar/19.9.2498openalex-snapshot
Complete nucleotide sequence of filamentous phage Cf1c fromXanthomonas campestrispv.citri
inferredcites →https://doi.org/10.1099/mic.0.000344openalex-snapshot
Pf4 bacteriophage produced by Pseudomonas aeruginosa inhibits Aspergillus fumigatus metabolism via iron sequestration
inferredcites →https://doi.org/10.1111/1758-2229.12388openalex-snapshot
Filamentous phage SW1 is active and influences the transcriptome of the host at high‐pressure and low‐temperature
inferredcites →https://doi.org/10.1111/apm.12099openalex-snapshot
The role of bacterial biofilms in chronic infections
inferredcites →https://doi.org/10.1111/j.1476-5381.2009.00604.xopenalex-snapshot
Ligand binding assays at equilibrium: validation and interpretation
inferredcites →https://doi.org/10.1111/j.1524-475x.2010.00608.xopenalex-snapshot
Delayed wound healing in diabetic (db/db) mice with Pseudomonas aeruginosa biofilm challenge: a model for the study of chronic wounds
inferredcites →https://doi.org/10.1126/science.aat2456openalex-snapshot
Bacterial antagonism in host-associated microbial communities
inferredcites →https://doi.org/10.1126/science.aat9691openalex-snapshot
Bacteriophage trigger antiviral immunity and prevent clearance of bacterial infection
inferredcites →https://doi.org/10.1126/scitranslmed.aau9748openalex-snapshot
Filamentous bacteriophages are associated with chronic Pseudomonas lung infections and antibiotic resistance in cystic fibrosis
inferredcites →https://doi.org/10.1126/scitranslmed.aaw8434openalex-snapshot
Selective activation of TWIK-related acid-sensitive K + 3 subunit–containing channels is analgesic in rodent models
inferredcites →https://doi.org/10.1128/aac.00001-13openalex-snapshot
Extracellular DNA Shields against Aminoglycosides in Pseudomonas aeruginosa Biofilms
inferredcites →https://doi.org/10.1128/aac.00078-18openalex-snapshot
Optimization and Evaluation of Piperacillin-Tobramycin Combination Dosage Regimens against Pseudomonas aeruginosa for Patients with Altered Pharmacokinetics via the Hollow-Fiber Infection Model and Mechanism-Based Modeling
inferredcites →https://doi.org/10.1128/aac.00381-10openalex-snapshot
Population Dynamics of Antibiotic Treatment: a Mathematical Model and Hypotheses for Time-Kill and Continuous-Culture Experiments
inferredcites →https://doi.org/10.1128/aac.01235-17openalex-snapshot
Reduced Chlorhexidine and Daptomycin Susceptibility in Vancomycin-Resistant Enterococcus faecium after Serial Chlorhexidine Exposure
inferredcites →https://doi.org/10.1128/aac.35.9.1824openalex-snapshot
Bactericidal effects of antibiotics on slowly growing and nongrowing bacteria
inferredcites →https://doi.org/10.1128/aac.42.7.1641openalex-snapshot
In Vitro and In Vivo Activities of Levofloxacin against Biofilm-Producing Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1128/aac.48.10.3670-3676.2004openalex-snapshot
Pharmacodynamic Functions: a Multiparameter Approach to the Design of Antibiotic Treatment Regimens
inferredcites →https://doi.org/10.1128/aem.00446-14openalex-snapshot
Modeling the Infection Dynamics of Bacteriophages in Enteric Escherichia coli: Estimating the Contribution of Transduction to Antimicrobial Gene Spread
inferredcites →https://doi.org/10.1128/iai.00541-17openalex-snapshot
Spontaneous Loss of Virulence in Natural Populations of Listeria monocytogenes
inferredcites →https://doi.org/10.1128/jb.01581-07openalex-snapshot
In Situ Growth Rates and Biofilm Development of Pseudomonas aeruginosa Populations in Chronic Lung Infections
inferredcites →https://doi.org/10.1128/jb.186.23.8066-8073.2004openalex-snapshot
Bacteriophage and Phenotypic Variation in Pseudomonas aeruginosa Biofilm Development
inferredcites →https://doi.org/10.1128/mbio.03042-19openalex-snapshot
Quantitative Framework for Model Evaluation in Microbiology Research Using Pseudomonas aeruginosa and Cystic Fibrosis Infection as a Test Case
inferredcites →https://doi.org/10.1128/msystems.00221-19openalex-snapshot
Lying in Wait: Modeling the Control of Bacterial Infections via Antibiotic-Induced Proviruses
inferredcites →https://doi.org/10.1128/msystems.00230-18openalex-snapshot
Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth
inferredcites →https://doi.org/10.1128/msystems.00756-19openalex-snapshot
Quantitative Models of Phage-Antibiotic Combination Therapy
inferredcites →https://doi.org/10.1164/rccm.200705-664ocopenalex-snapshot
Cystic Fibrosis Pulmonary Guidelines
inferredcites →https://doi.org/10.1164/rccm.201207-1160oeopenalex-snapshot
Cystic Fibrosis Pulmonary Guidelines
inferredcites →https://doi.org/10.1164/rccm.201407-1277ocopenalex-snapshot
Early Respiratory Infection is Associated with Reduced Spirometry in Children with Cystic Fibrosis
inferredcites →https://doi.org/10.1165/rcmb.2012-0059psopenalex-snapshot
Cystic Fibrosis Therapy: A Community Ecology Perspective
inferredcites →https://doi.org/10.1371/journal.ppat.1000253openalex-snapshot
Quantitative Models of In Vitro Bacteriophage–Host Dynamics and Their Application to Phage Therapy
inferredcites →https://doi.org/10.1378/chest.123.1.28openalex-snapshot
Efficiency of Pulmonary Administration of Tobramycin Solution for Inhalation in Cystic Fibrosis Using an Improved Drug Delivery System
inferredcites →https://doi.org/10.15698/mic2016.01.475openalex-snapshot
Biofilm assembly becomes crystal clear – filamentous bacteriophage organize the Pseudomonas aeruginosa biofilm matrix into a liquid crystal
inferredcites →https://doi.org/10.1586/17476348.2014.896205openalex-snapshot
Aerosolized antibiotics in cystic fibrosis: an update
inferredcites →https://doi.org/10.21775/cimb.013.051openalex-snapshot
Filamentous Bacteriophage: Biology, Phage Display and Nanotechnology Applications
inferredcites →https://doi.org/10.3354/meps072205openalex-snapshot
Production and decay of viruses in aquatic environments
inferredcites →https://doi.org/10.3389/fimmu.2018.03067openalex-snapshot
Viral-Bacterial Co-infections in the Cystic Fibrosis Respiratory Tract
inferredcites →https://doi.org/10.3389/fimmu.2020.00244openalex-snapshot
Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections
inferredcites →https://doi.org/10.3390/pharmaceutics11090470openalex-snapshot
Evaluation of Tobramycin and Ciprofloxacin as a Synergistic Combination Against Hypermutable Pseudomonas Aeruginosa Strains via Mechanism-Based Modelling
inferredcites →https://doi.org/10.3390/v5030806openalex-snapshot
Understanding Bacteriophage Specificity in Natural Microbial Communities
inferredcites →https://doi.org/10.4248/ijos11026openalex-snapshot
The clinical impact of bacterial biofilms

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inferred← citeshttps://doi.org/10.1101/2021.12.03.471163openalex-snapshot
Modelling of filamentous phage-induced antibiotic tolerance of P.aeruginosa
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