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Understanding Bacteriophage Specificity in Natural Microbial Communities

https://doi.org/10.3390/v5030806
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A novel plasmid-encoded phage abortive infection system from Lactococcus lactis biovar. diacetylactis
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Phage-Mediated Intergeneric Transfer of Toxin Genes
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Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil
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Bacteria-Phage Antagonistic Coevolution in Soil
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Virus-host swinging party in the oceans

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1016/j.meegid.2019.05.021openalex-snapshot
Impact of bile salts on coevolutionary dynamics between the gut bacterium Escherichia coli and its lytic phage PP01
inferred← citeshttps://doi.org/10.1016/j.mehy.2022.110980openalex-snapshot
Prophage induction therapy: Activation of the lytic phase in prophages for the elimination of pathogenic bacteria
inferred← citeshttps://doi.org/10.1016/j.mib.2017.04.010openalex-snapshot
Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
inferred← citeshttps://doi.org/10.1016/j.micres.2020.126690openalex-snapshot
Harnessing the plant microbiome to promote the growth of agricultural crops
inferred← citeshttps://doi.org/10.1016/j.micres.2024.127766openalex-snapshot
Role of core lipopolysaccharide biosynthetic genes in the infection and adsorption of broad-host-range bacteriophages of Rhizobium etli.
inferred← citeshttps://doi.org/10.1016/j.micres.2025.128230openalex-snapshot
Bridging phage production models and practical applications to control antibiotic-resistant bacteria
inferred← citeshttps://doi.org/10.1016/j.micres.2025.128298openalex-snapshot
Characterization and therapeutic efficacy of phage p9676 against epidemic ST11-KL64 Klebsiella pneumoniae: Insights from genomic analysis and in vivo studies
inferred← citeshttps://doi.org/10.1016/j.pedsph.2026.09.007openalex-snapshot
Effects and mechanisms of exogenous pollutants introduced by agricultural activities on the transmission of antibiotic resistance genes in farmland ecosystems
inferred← citeshttps://doi.org/10.1016/j.pmpp.2026.103311openalex-snapshot
Genomic insights into virulence divergence and host adaptation in two closely related Pseudomonas syringae pv. syringae isolates infecting Citrus
inferred← citeshttps://doi.org/10.1016/j.resmic.2021.103869openalex-snapshot
A highly specific Serratia-infecting T7-like phage inhibits biofilm formation in two different genera of the Enterobacteriaceae family
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.135395openalex-snapshot
Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.168310openalex-snapshot
Metagenomic analysis of antibiotic-resistance genes and viruses released from glaciers into downstream habitats
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.171208openalex-snapshot
Molecular characterization and environmental impact of newly isolated lytic phage SLAM_phiST1N3 in the Cornellvirus genus for biocontrol of a multidrug-resistant Salmonella Typhimurium in the swine industry chain
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.174931openalex-snapshot
A review of bacteriophage and their application in domestic animals in a post-antibiotic era
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.176834openalex-snapshot
Genomic mapping of wastewater bacteriophage may predict potential bacterial pathogens infecting the community
inferred← citeshttps://doi.org/10.1016/j.soilbio.2019.05.004openalex-snapshot
Changes in microbial functional genes within the soil metagenome during forest ecosystem restoration
inferred← citeshttps://doi.org/10.1016/j.soilbio.2026.110123openalex-snapshot
Virus-inclusive microbial network relationships align with the stress gradient hypothesis in saline-alkali agroecosystems
inferred← citeshttps://doi.org/10.1016/j.talanta.2025.129323openalex-snapshot
Electrochemical biosensors as emerging alternatives to conventional detection of pathogens and antibiotic-resistance determinants
inferred← citeshttps://doi.org/10.1016/j.talanta.2026.129926openalex-snapshot
Rapid electrochemical detection of Escherichia coli in milk using an oriented phage-based biosensor
inferred← citeshttps://doi.org/10.1016/j.tim.2022.09.003openalex-snapshot
Modes of therapeutic delivery in synthetic microbiology
inferred← citeshttps://doi.org/10.1016/j.tim.2025.03.009openalex-snapshot
Unraveling the tempo and mode of horizontal gene transfer in bacteria
inferred← citeshttps://doi.org/10.1016/j.tips.2016.10.001openalex-snapshot
Introducing the Microbiome into Precision Medicine
inferred← citeshttps://doi.org/10.1016/j.vetmic.2019.108527openalex-snapshot
Effect of time of therapy with wild-type lytic bacteriophages on the reduction of Salmonella Enteritidis in broiler chickens
inferred← citeshttps://doi.org/10.1016/j.virusres.2015.10.025openalex-snapshot
Potential of phage cocktails in the inactivation of Enterobacter cloacae —An in vitro study in a buffer solution and in urine samples
inferred← citeshttps://doi.org/10.1016/j.virusres.2016.09.019openalex-snapshot
Characterization and in vitro evaluation of new bacteriophages for the biocontrol of Escherichia coli
inferred← citeshttps://doi.org/10.1016/j.virusres.2023.199049openalex-snapshot
Characterization, genome analysis and antibiofilm efficacy of lytic Proteus phages RP6 and RP7 isolated from university hospital sewage
inferred← citeshttps://doi.org/10.1017/9781108654418.007openalex-snapshot
Host microbiomes and disease
inferred← citeshttps://doi.org/10.1017/ash.2025.33openalex-snapshot
Environmental hygiene strategies to combat antimicrobial resistance in healthcare settings
inferred← citeshttps://doi.org/10.1017/cbo9781139794749.028openalex-snapshot
When is co-phylogeny evidence ofcoevolution?
inferred← citeshttps://doi.org/10.1017/s0021859618001053openalex-snapshot
Cow responses and evolution of the rumen bacterial and methanogen community following a complete rumen content transfer
inferred← citeshttps://doi.org/10.1021/acs.biomac.3c01042openalex-snapshot
Screening of Hydrophilic Polymers Reveals Broad Activity in Protecting Phages during Cryopreservation
inferred← citeshttps://doi.org/10.1021/acs.chemrev.1c00877openalex-snapshot
Protein Cages: From Fundamentals to Advanced Applications
inferred← citeshttps://doi.org/10.1021/acs.chemrev.4c00687openalex-snapshot
Synthetic Biology of Plants and Microbes for Agriculture, Environment, and Future Applications
inferred← citeshttps://doi.org/10.1021/acs.estlett.7b00045openalex-snapshot
Control of Antibiotic-Resistant Bacteria in Activated Sludge Using Polyvalent Phages in Conjunction with a Production Host
inferred← citeshttps://doi.org/10.1021/acsinfecdis.0c00358openalex-snapshot
Rapid Isolation, Propagation, and Online Analysis of a Small Number of Therapeutic Staphylococcal Bacteriophages from a Complex Matrix
inferred← citeshttps://doi.org/10.1038/nmicrobiol.2016.31openalex-snapshot
Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype
inferred← citeshttps://doi.org/10.1038/s41396-018-0099-8openalex-snapshot
Multiple mechanisms drive phage infection efficiency in nearly identical hosts
inferred← citeshttps://doi.org/10.1038/s41396-023-01466-1openalex-snapshot
Novel pelagiphage isolate Polarivirus skadi is a polar specialist that dominates SAR11-associated bacteriophage communities at high latitudes
inferred← citeshttps://doi.org/10.1038/s41467-018-07164-3openalex-snapshot
Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean
inferred← citeshttps://doi.org/10.1038/s41467-021-27583-zopenalex-snapshot
Resolving the structure of phage–bacteria interactions in the context of natural diversity
inferred← citeshttps://doi.org/10.1038/s41467-022-32832-wopenalex-snapshot
Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort
inferred← citeshttps://doi.org/10.1038/s41559-020-01364-1openalex-snapshot
Host diversity slows bacteriophage adaptation by selecting generalists over specialists
inferred← citeshttps://doi.org/10.1038/s41564-019-0526-2openalex-snapshot
Defining the human gut host–phage network through single-cell viral tagging
inferred← citeshttps://doi.org/10.1038/s41564-023-01347-5openalex-snapshot
Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats
inferred← citeshttps://doi.org/10.1038/s41564-023-01406-xopenalex-snapshot
Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases
inferred← citeshttps://doi.org/10.1038/s41564-023-01422-xopenalex-snapshot
Bacteriophage DNA in blood provides species-level insight into bacterial infections
inferred← citeshttps://doi.org/10.1038/s41564-024-01910-8openalex-snapshot
Streptomyces secretes a siderophore that sensitizes competitor bacteria to phage infection
inferred← citeshttps://doi.org/10.1038/s41579-021-00530-xopenalex-snapshot
Revisiting the rules of life for viruses of microorganisms
inferred← citeshttps://doi.org/10.1038/s41579-026-01306-xopenalex-snapshot
Phage host range: determinants, dynamics and applications
inferred← citeshttps://doi.org/10.1038/s41585-019-0192-4openalex-snapshot
Bacteriophages of the lower urinary tract
inferred← citeshttps://doi.org/10.1038/s41598-017-00730-7openalex-snapshot
The underlying process of early ecological and genetic differentiation in a facultative mutualistic Sinorhizobium meliloti population
inferred← citeshttps://doi.org/10.1038/s41598-023-50449-xopenalex-snapshot
Prediction and characterization of prophages of Stenotrophomonas maltophilia reveals a remarkable phylogenetic diversity of prophages
inferred← citeshttps://doi.org/10.1038/s41598-025-21701-3openalex-snapshot
Isolation, functional characterization and antibiofilm properties of a lytic Enterococcus phage RG1 against multidrug resistant E. faecium
inferred← citeshttps://doi.org/10.1038/s41598-025-87626-zopenalex-snapshot
Proliferative and viability effects of two cyanophages on freshwater bloom-forming species Microcystis aeruginosa and Raphidiopsis raciborskii vary between strains
inferred← citeshttps://doi.org/10.1038/s41598-025-92032-6openalex-snapshot
A novel Kayvirus species phage RuSa1 removes biofilm and lyses multiple clinical strains of methicillin resistant Staphylococcus aureus
inferred← citeshttps://doi.org/10.1038/s44321-024-00149-4openalex-snapshot
Diagnosing and engineering gut microbiomes
inferred← citeshttps://doi.org/10.1038/srep23532openalex-snapshot
Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy-induced neutropenia
inferred← citeshttps://doi.org/10.1039/9781839169427-00243openalex-snapshot
Nanotechnology for bacteriophages, bacteriophages for nanotechnology
inferred← citeshttps://doi.org/10.1039/d0en00962hopenalex-snapshot
Emerging investigator series: bacteriophages as nano engineering tools for quality monitoring and pathogen detection in water and wastewater
inferred← citeshttps://doi.org/10.1039/d4lc00795fopenalex-snapshot
Advancements in microfluidic technology for rapid bacterial detection and inflammation-driven diseases
inferred← citeshttps://doi.org/10.1039/d5sd00069fopenalex-snapshot
Array-based polymer-phage biosensors for detection and differentiation of bacteria
inferred← citeshttps://doi.org/10.1042/cs20220777openalex-snapshot
The leaky gut and the gut microbiome in sepsis – targets in research and treatment
inferred← citeshttps://doi.org/10.1073/pnas.1906897116openalex-snapshot
Resistance in marine cyanobacteria differs against specialist and generalist cyanophages
inferred← citeshttps://doi.org/10.1073/pnas.1913234117openalex-snapshot
Controlled phage therapy by photothermal ablation of specific bacterial species using gold nanorods targeted by chimeric phages
inferred← citeshttps://doi.org/10.1073/pnas.2504853122openalex-snapshot
Phage-based delivery of CRISPR-associated transposases for targeted bacterial editing
inferred← citeshttps://doi.org/10.1080/02648725.2023.2178870openalex-snapshot
Phage cocktails – an emerging approach for the control of bacterial infection with major emphasis on foodborne pathogens
inferred← citeshttps://doi.org/10.1080/08997659.2016.1249578openalex-snapshot
Isolation and Characterization of Large Marine Bacteriophage (Myoviridae), VhKM4 Infecting Vibrio harveyi
inferred← citeshttps://doi.org/10.1080/14787210.2026.2632669openalex-snapshot
Phage therapy: innovations, challenges, and future directions in combating superbugs and antibiotic resistance
inferred← citeshttps://doi.org/10.1080/19490976.2025.2526719openalex-snapshot
Single cell viral tagging of Faecalibacterium prausnitzii reveals rare bacteriophages omitted by other techniques
inferred← citeshttps://doi.org/10.1086/676888openalex-snapshot
Bacteria-Phage Interactions across Time and Space: Merging Local Adaptation and Time-Shift Experiments to Understand Phage Evolution
inferred← citeshttps://doi.org/10.1086/717181openalex-snapshot
Multiyear Time-Shift Study of Bacteria and Phage Dynamics in the Phyllosphere
inferred← citeshttps://doi.org/10.1089/phage.2020.0014openalex-snapshot
Bacteriophages Could Be a Potential Game Changer in the Trajectory of Coronavirus Disease (COVID-19)
inferred← citeshttps://doi.org/10.1089/phage.2020.0047openalex-snapshot
Investigation of Phages Infecting Escherichia coli Strains B and C, and Enterobacter cloacae in Sewage and Ebrié Lagoon, Côte d'Ivoire
inferred← citeshttps://doi.org/10.1089/phage.2024.0062openalex-snapshot
Phage and Endolysin Therapy Against Antibiotics Resistant Bacterial Otitis and Rhinosinusitis: A Narrative Review on In Vivo and In Vitro Applications
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab585openalex-snapshot
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes
inferred← citeshttps://doi.org/10.1093/cid/ciad480openalex-snapshot
How Simple Maths Can Inform Our Basic Understanding of Phage Therapy
inferred← citeshttps://doi.org/10.1093/cid/ciad497openalex-snapshot
Therapeutic Phage Monitoring: A Review
inferred← citeshttps://doi.org/10.1093/femsec/fiv046openalex-snapshot
Linking environmental prokaryotic viruses and their host through CRISPRs
inferred← citeshttps://doi.org/10.1093/femsre/fuag002openalex-snapshot
Limitations and safety aspects related to the use of bacteriophages in food production
inferred← citeshttps://doi.org/10.1093/femsre/fuv048openalex-snapshot
Computational approaches to predict bacteriophage–host relationships
inferred← citeshttps://doi.org/10.1093/fqsafe/fyad049openalex-snapshot
Can natural preservatives serve as a new line of protective technology against bacterial pathogens in meat and meat products?
inferred← citeshttps://doi.org/10.1093/gbe/evag152openalex-snapshot
Host Range Breadth Correlates with Genic Diversity in Honeybee Phages
inferred← citeshttps://doi.org/10.1093/gbe/evz184openalex-snapshot
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
inferred← citeshttps://doi.org/10.1093/icb/icad087openalex-snapshot
Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology
inferred← citeshttps://doi.org/10.1093/ismeco/ycag022openalex-snapshot
Phage-microbe interactions may contribute to the population structure and dynamics of hydrothermal vent symbionts
inferred← citeshttps://doi.org/10.1093/jac/dkaf293openalex-snapshot
Phages connect the biological dots of antimicrobial resistance: from genesis and spread to alternative treatment modules
inferred← citeshttps://doi.org/10.1093/jambio/lxae115openalex-snapshot
Bacteriophages to control Vibrio alginolyticus in live feeds prior to their administration in larviculture
inferred← citeshttps://doi.org/10.1093/jambio/lxaf087openalex-snapshot
A critical view of antimicrobial peptides: exploring their potential and the barriers to realization
inferred← citeshttps://doi.org/10.1093/nar/gkae906openalex-snapshot
Unveiling host–parasite relationships through conserved MITEs in prokaryote and viral genomes
inferred← citeshttps://doi.org/10.1093/ve/vex011openalex-snapshot
Viral coinfection is shaped by host ecology and virus–virus interactions across diverse microbial taxa and environments
inferred← citeshttps://doi.org/10.1094/phyto-04-23-0145-kcopenalex-snapshot
Multisite Field Evaluation of Bacteriophages for Fire Blight Management: Incorporation of Ultraviolet Radiation Protectants and Impact on the Apple Flower Microbiome
inferred← citeshttps://doi.org/10.1097/ta.0000000000001809openalex-snapshot
The history and promising future of phage therapy in the military service
inferred← citeshttps://doi.org/10.1098/rsfs.2013.0033openalex-snapshot
Coevolutionary diversification creates nested-modular structure in phage–bacteria interaction networks
inferred← citeshttps://doi.org/10.1098/rsos.160839openalex-snapshot
Evolving interactions between diazotrophic cyanobacterium and phage mediate nitrogen release and host competitive ability
inferred← citeshttps://doi.org/10.1098/rsos.191669openalex-snapshot
Filamentous phages reduce bacterial growth in low salinities
inferred← citeshttps://doi.org/10.1098/rspb.2016.1652openalex-snapshot
Temporal patterns of local adaptation in soil pseudomonads
inferred← citeshttps://doi.org/10.1098/rstb.2014.0297openalex-snapshot
The evolution of bacterial resistance against bacteriophages in the horse chestnut phyllosphere is general across both space and time
inferred← citeshttps://doi.org/10.1098/rstb.2015.0504openalex-snapshot
When pathogenic bacteria meet the intestinal microbiota
inferred← citeshttps://doi.org/10.1098/rstb.2019.0244openalex-snapshot
Linking microbial communities to ecosystem functions: what we can learn from genotype–phenotype mapping in organisms
inferred← citeshttps://doi.org/10.1098/rstb.2019.0252openalex-snapshot
Community coalescence: an eco-evolutionary perspective
inferred← citeshttps://doi.org/10.1099/jgv.0.002198openalex-snapshot
Isolation, characterization and genomic analysis of a novel lytic bacteriophage EcoPhCCP1, capable of infecting multiple strains of multidrug-resistant Escherichia coli recovered from urinary tract infections
inferred← citeshttps://doi.org/10.1099/mgen.0.001150openalex-snapshot
The mobilome of Lactobacillus crispatus M247 includes two novel genetic elements: Tn7088 coding for a putative bacteriocin and the siphovirus prophage ΦM247
inferred← citeshttps://doi.org/10.1101/2020.05.13.093716openalex-snapshot
Phages - bacteria interactions network of the healthy human gut
inferred← citeshttps://doi.org/10.1101/2020.08.07.242396openalex-snapshot
Dynamics of infection in a novel group of promiscuous phages and hosts of multiple bacterial genera retrieved from river communities
inferred← citeshttps://doi.org/10.1101/2020.08.30.272203openalex-snapshot
The Impact of Pf Bacteriophages on the Fitness of Pseudomonas aeruginosa ; A Mathematical Modeling Approach
inferred← citeshttps://doi.org/10.1101/2022.03.23.485578openalex-snapshot
Urinary F plasmids reduce permissivity to coliphage infection
inferred← citeshttps://doi.org/10.1101/2022.08.10.503363openalex-snapshot
Pelagibacter phage Skadi - An abundant polar specialist that exemplifies ecotypic niche specificity among the most abundant viruses on Earth
inferred← citeshttps://doi.org/10.1101/2022.08.15.504009openalex-snapshot
The circulating phageome reflects bacterial infections
inferred← citeshttps://doi.org/10.1101/2023.04.19.537559openalex-snapshot
Viral impacts on microbial activity and biogeochemical cycling in a seasonally anoxic freshwater lake
inferred← citeshttps://doi.org/10.1101/2024.01.18.576219openalex-snapshot
Bridging Viruses and Prokaryotic Host through Miniature Inverted-repeat Transposable Elements (MITEs)
inferred← citeshttps://doi.org/10.1101/2024.03.13.584857openalex-snapshot
Convergent evolution during host range expansion and virulence increase in a Salmonella bacteriophage
inferred← citeshttps://doi.org/10.1101/2024.04.23.590639openalex-snapshot
Phages indirectly maintain plant pathogen defense through regulation of the commensal microbiome
inferred← citeshttps://doi.org/10.1101/2024.06.20.599855openalex-snapshot
Micro-plaque assays: A high-throughput method to detect, isolate, and characterize bacteriophages
inferred← citeshttps://doi.org/10.1101/2024.12.28.630609openalex-snapshot
Spatial heterogeneity influences phage-host co-existence dynamics and phage resistance development in Vibrio anguillarum
inferred← citeshttps://doi.org/10.1101/2025.01.31.635958openalex-snapshot
Mobile genetic elements exhibit associated patterns of host range variation and sequence diversity within the gut microbiome of the European Honey bee
inferred← citeshttps://doi.org/10.1101/2025.02.21.639545openalex-snapshot
Phage interactions may contribute to the population structure and dynamics of hydrothermal vent microbial symbionts
inferred← citeshttps://doi.org/10.1101/552265openalex-snapshot
Evolutionary dynamics of phage resistance in bacterial biofilms
inferred← citeshttps://doi.org/10.1101/607325openalex-snapshot
The neglected part of the microbiome: Prophage TJ1 regulates the bacterial community of the metaorganism Hydra
inferred← citeshttps://doi.org/10.1101/627976openalex-snapshot
Isolation and Characterization of ΦGF1, a Morphotype C3 Bacteriophage that Infects Escherichia coli
inferred← citeshttps://doi.org/10.1111/1462-2920.12570openalex-snapshot
Microbiology of sugar‐rich environments: diversity, ecology and system constraints
inferred← citeshttps://doi.org/10.1111/1462-2920.12627openalex-snapshot
The long‐term adaptation of bacterial communities in metal‐contaminated sediments: a metaproteogenomic study
inferred← citeshttps://doi.org/10.1111/1462-2920.14597openalex-snapshot
The genera of bacteriophages and their receptors are the major determinants of host range
inferred← citeshttps://doi.org/10.1111/1462-2920.15113openalex-snapshot
DNA tandem repeats contribute to the genetic diversity of Brevibacterium aurantiacum phages
inferred← citeshttps://doi.org/10.1111/1462-2920.15593openalex-snapshot
Genome‐informed approach to identify genetic determinants of Flavobacterium psychrophilum phage susceptibility
inferred← citeshttps://doi.org/10.1111/1462-2920.16210openalex-snapshot
Widespread yet persistent low abundance of TIM5 ‐like cyanophages in the oceans
inferred← citeshttps://doi.org/10.1111/1541-4337.12339openalex-snapshot
Integration of Emerging Biomedical Technologies in Meat Processing to Improve Meat Safety and Quality
inferred← citeshttps://doi.org/10.1111/1574-6976.12072openalex-snapshot
Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
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