On the public citation graph

Revealing the evolutionary history of a reticulate polyploid complex in the genus Isoëtes

https://doi.org/10.1101/2020.11.04.363374

0 signed · 97 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1060openalex-snapshot

Impact of whole‐genome duplication events on diversification rates in angiosperms

inferredcites →https://doi.org/10.1002/ajb2.1729openalex-snapshot

The diversity and community structure of symbiotic cyanobacteria in hornworts inferred from long‐read amplicon sequencing

inferredcites →https://doi.org/10.1007/978-1-4613-3069-1_11openalex-snapshot

Polyploidy in Pteridophytes

inferredcites →https://doi.org/10.1007/978-3-662-02604-5openalex-snapshot

Pteridophytes and Gymnosperms

inferredcites →https://doi.org/10.1007/bf00983203openalex-snapshot

Evidence for intergeneric incompatibility in ferns

inferredcites →https://doi.org/10.1007/bf02920930openalex-snapshot

Flow cytometric estimation of nuclear DNA amount in diploid bananas (Musa acuminata andM. balbisiana)

inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot

Gene tree discordance, phylogenetic inference and the multispecies coalescent

inferredcites →https://doi.org/10.1016/j.ympev.2012.05.009openalex-snapshot

Reticulate evolution on a global scale: A nuclear phylogeny for New World Dryopteris (Dryopteridaceae)

inferredcites →https://doi.org/10.1016/j.ympev.2017.11.025openalex-snapshot

Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions

inferredcites →https://doi.org/10.1016/s0065-2660(08)60490-3openalex-snapshot

Types of Polyploids: Their Classification and Significance

inferredcites →https://doi.org/10.1016/s0277-3791(00)00115-3openalex-snapshot

Late Quaternary paleoenvironments of Northwestern North America: implications for inland versus coastal migration routes

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1071/sb18057openalex-snapshot

Genome skimming provides well resolved plastid and nuclear phylogenies, showing patterns of deep reticulate evolution in the tropical carnivorous plant genus Nepenthes (Caryophyllales)

inferredcites →https://doi.org/10.1073/pnas.0811575106openalex-snapshot

The frequency of polyploid speciation in vascular plants

inferredcites →https://doi.org/10.1073/pnas.97.13.7051openalex-snapshot

The role of genetic and genomic attributes in the success of polyploids

inferredcites →https://doi.org/10.1086/378650openalex-snapshot

Biogeography of Discontinuously Distributed Hydrophytes: A Molecular Appraisal of Intercontinental Disjunctions

inferredcites →https://doi.org/10.1086/523367openalex-snapshot

Mating Consequences of Polyploid Evolution in Flowering Plants: Current Trends and Insights from Synthetic Polyploids

inferredcites →https://doi.org/10.1086/684179openalex-snapshot

Disentangling the Phylogeny of Isoetes (Isoetales), Using Nuclear and Plastid Data

inferredcites →https://doi.org/10.1089/cmb.2005.12.796openalex-snapshot

Reconstructing Reticulate Evolution in Species—Theory and Practice

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/aibsbulletin/2.2.14-bopenalex-snapshot

Genetics and the Origin of Species

inferredcites →https://doi.org/10.1093/aob/mci005openalex-snapshot

Plant DNA Flow Cytometry and Estimation of Nuclear Genome Size

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btz966openalex-snapshot

ipyrad: Interactive assembly and analysis of RADseq datasets

inferredcites →https://doi.org/10.1093/biosci/biw108openalex-snapshot

Sex and the Single Gametophyte: Revising the Homosporous Vascular Plant Life Cycle in Light of Contemporary Research

inferredcites →https://doi.org/10.1093/botlinnean/box057openalex-snapshot

Origin and biogeography of the ancient genus Isoëtes with focus on the Neotropics

inferredcites →https://doi.org/10.1093/molbev/msh018openalex-snapshot

Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks

inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot

Application of Phylogenetic Networks in Evolutionary Studies

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/oxfordjournals.aob.a090176openalex-snapshot

THE METHOD OF SPORE DISPERSAL OF THREE SOUTH AFRICAN SPECIES OF ISOETES

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026092openalex-snapshot

Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit

inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

inferredcites →https://doi.org/10.1101/2020.08.07.241489openalex-snapshot

Evolution of multiple postzygotic barriers between species of the Mimulus tilingii complex

inferredcites →https://doi.org/10.1111/1755-0998.12387openalex-snapshot

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

inferredcites →https://doi.org/10.1111/evo.14105openalex-snapshot

Evolution of multiple postzygotic barriers between species of the Mimulus tilingii complex*

inferredcites →https://doi.org/10.1111/fwb.13426openalex-snapshot

Six steps towards operationalising freshwater ecoacoustic monitoring

inferredcites →https://doi.org/10.1111/fwb.13615openalex-snapshot

Seed dispersal by neotropical waterfowl depends on bird species and seasonality

inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00337.xopenalex-snapshot

Polyploidy in arctic plants

inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00339.xopenalex-snapshot

The role of triploid hybrids in the evolutionary dynamics of mixed-ploidy populations

inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot

Detecting the number of clusters of individuals using the software structure : a simulation study

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04281.xopenalex-snapshot

Genetic structure and evolution of Alpine polyploid complexes: Ranunculus kuepferi (Ranunculaceae) as a case study

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04285.xopenalex-snapshot

Does hybridization between divergent progenitors drive whole‐genome duplication?

inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

inferredcites →https://doi.org/10.1111/jse.12226openalex-snapshot

Genetic and genomic aspects of hybridization in ferns

inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot

Stacks: an analysis tool set for population genomics

inferredcites →https://doi.org/10.1111/nph.12756openalex-snapshot

Are polyploids really evolutionary dead‐ends (again)? A critical reappraisal of Mayrose et al . (2011)

inferredcites →https://doi.org/10.1111/nph.13192openalex-snapshot

Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al . (2014)

inferredcites →https://doi.org/10.1111/nph.13213openalex-snapshot

Dynamics of asymmetrical hybridization in North American wood ferns: reconciling patterns of inheritance with gametophyte reproductive biology

inferredcites →https://doi.org/10.1111/nph.14111openalex-snapshot

Next‐generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single‐molecule sequencing

inferredcites →https://doi.org/10.1126/science.1207205openalex-snapshot

Recently Formed Polyploid Plants Diversify at Lower Rates

inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot

Genomic architecture and introgression shape a butterfly radiation

inferredcites →https://doi.org/10.1139/b89-383openalex-snapshot

A new Isoetes hybrid (Isoetes echinospora × riparia) for Canada

inferredcites →https://doi.org/10.1139/b99-146openalex-snapshot

Isoetes×echtuckerii, hyb. nov., a new triploid quillwort from northeastern North America

inferredcites →https://doi.org/10.1139/g96-148openalex-snapshot

Chromosome pairing affinity and quadrivalent formation in polyploids: do segmental allopolyploids exist?

inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.359openalex-snapshot

Hybrid Origins of Plant Species

inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150437openalex-snapshot

Neopolyploidy in Flowering Plants

inferredcites →https://doi.org/10.11646/phytotaxa.277.2.1openalex-snapshot

The genus Isoetes (Isoetaceae): a provisional checklist of the accepted and unresolved taxa

inferredcites →https://doi.org/10.1186/1471-2148-10-321openalex-snapshot

Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages

inferredcites →https://doi.org/10.1186/1471-2148-12-104openalex-snapshot

Unraveling reticulate evolution in North American Dryopteris (Dryopteridaceae)

inferredcites →https://doi.org/10.1186/s12862-020-01687-4openalex-snapshot

The speciation and adaptation of the polyploids: a case study of the Chinese Isoetes L. diploid-polyploid complex

inferredcites →https://doi.org/10.1371/journal.pgen.1009095openalex-snapshot

Ancient and recent introgression shape the evolutionary history of pollinator adaptation and speciation in a model monkeyflower radiation (Mimulus section Erythranthe)

inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

inferredcites →https://doi.org/10.1371/journal.pone.0227525openalex-snapshot

Phylogenomics indicates the “living fossil” Isoetes diversified in the Cenozoic

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.1600/036364417x694557openalex-snapshot

Two Beringian Origins for the Allotetraploid Fern Polystichum braunii (Dryopteridaceae)

inferredcites →https://doi.org/10.1640/0002-8444(2001)091[0041:sotnai]2.0.co;2openalex-snapshot

Systematics of the Northern Andean Isoëtes karstenii Complex

inferredcites →https://doi.org/10.1640/0002-8444(2002)092[0161:ithwai]2.0.co;2openalex-snapshot

Isoëtes ×herb-wagneri, an Interspecific Hybrid of I. bolanderi × I. echinospora (Isoëtaceae)

inferredcites →https://doi.org/10.1640/0002-8444(2004)094[0196:proiii]2.0.co;2openalex-snapshot

Phylogenetic Relationships of Isoëtes (Isoëtaceae) in China as Revealed by Nucleotide Sequences of the Nuclear Ribosomal ITS Region and the Second Intron of aLEAFYHomolog

inferredcites →https://doi.org/10.1640/0002-8444-104.1.7openalex-snapshot

Isoëtes viridimontana: A Previously Unrecognized Quillwort from Vermont, USA

inferredcites →https://doi.org/10.2179/16-120openalex-snapshot

Application of DNA Flow Cytometry to Aid Species Delimitation in Isoetes

inferredcites →https://doi.org/10.2179/17-132openalex-snapshot

A Whole Chloroplast Genome Phylogeny of Diploid Species of Isoëtes (Isoëtaceae, Lycopodiophyta) in the Southeastern United States

inferredcites →https://doi.org/10.2307/1218589openalex-snapshot

THE SIGNIFICANCE OF HYBRIDIZATION FOR PLANT TAXONOMY AND EVOLUTION

inferredcites →https://doi.org/10.2307/1218997openalex-snapshot

MINORITY CYTOTYPE EXCLUSION IN LOCAL PLANT POPULATIONS

inferredcites →https://doi.org/10.2307/1546979openalex-snapshot

Cytotaxonomy of the Isoetes echinospora Complex

inferredcites →https://doi.org/10.2307/1547160openalex-snapshot

Hybridization, Reticulation, and Species Concepts in the Ferns

inferredcites →https://doi.org/10.2307/1547162openalex-snapshot

The Species Concept in Pteridophyta with Special Reference to Isoetes

inferredcites →https://doi.org/10.2307/1547347openalex-snapshot

Isoetes in Alaska and the Aleutians

inferredcites →https://doi.org/10.2307/1547597openalex-snapshot

Isoetes X hickeyi: A Naturally Occurring Hybrid between I. echinospora and I. macrospora

inferredcites →https://doi.org/10.2307/1547721openalex-snapshot

Detecting Abortive Spores in Herbarium Specimens of Sterile Hybrids

inferredcites →https://doi.org/10.2307/2399754openalex-snapshot

Evolution of Isoetalean Lycopsids

inferredcites →https://doi.org/10.2307/2399755openalex-snapshot

Habitat, Evolution, and Speciation in Isoetes

inferredcites →https://doi.org/10.2307/2419442openalex-snapshot

Reticulate Evolution in the Polypodium vulgare Complex

inferredcites →https://doi.org/10.2307/2845635openalex-snapshot

Ecological and Historical Factors in Fern Biogeography

inferredcites →https://doi.org/10.2307/2990000openalex-snapshot

Monograph of the Isoetaceae

inferredcites →https://doi.org/10.3732/ajb.0900162openalex-snapshot

Speciation pathway of Isoëtes (Isoëtaceae) in East Asia inferred from molecular phylogenetic relationships

inferredcites →https://doi.org/10.3732/ajb.0900355openalex-snapshot

Reconstructing Dryopteris “semicristata” (Dryopteridaceae): Molecular profiles of tetraploids verify their undiscovered diploid ancestor

inferredcites →https://doi.org/10.3732/ajb.1400190openalex-snapshot

Evidence for reciprocal origins in Polypodium hesperium (Polypodiaceae): A fern model system for investigating how multiple origins shape allopolyploid genomes

inferredcites →https://doi.org/10.3732/ajb.1400201openalex-snapshot

The role of homoploid hybridization in evolution: A century of studies synthesizing genetics and ecology

inferredcites →https://doi.org/10.3732/ajb.91.10.1700openalex-snapshot

Reconstructing patterns of reticulate evolution in plants

inferredcites →https://doi.org/10.3732/ajb.91.6.899openalex-snapshot

Revealing unknown or extinct lineages within Isoëtes (Isoëtaceae) using DNA sequencesfrom hybrids

inferredcites →https://doi.org/10.4095/133927openalex-snapshot

Paleogeography of northern North America, 18 000 - 5 000 years ago

inferredcites →https://doi.org/10.5962/p.358666openalex-snapshot

Maritime Quillwort, Isoetes maritima (Isoetaceae), in the Yukon Territory

inferredcites →https://doi.org/10.7202/014755aropenalex-snapshot

Late Quaternary Vegetation History of Northern North America Based on Pollen, Macrofossil, and Faunal Remains*

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2021.11.18.468666openalex-snapshot

PURC v2.0: A Program for Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.