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Genome skimming provides well resolved plastid and nuclear phylogenies, showing patterns of deep reticulate evolution in the tropical carnivorous plant genus Nepenthes (Caryophyllales)

https://doi.org/10.1071/sb18057
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/mpev.1998.0545openalex-snapshot
Phylogenetic Utility of the External Transcribed Spacer (ETS) of 18S–26S rDNA: Congruence of ETS and ITS Trees ofCalycadenia(Compositae)
inferredcites →https://doi.org/10.1006/mpev.1999.0706openalex-snapshot
The Complete External Transcribed Spacer of 18S-26S rDNA: Amplification and Phylogenetic Utility at Low Taxonomic Levels in Asteraceae and Closely Allied Families
inferredcites →https://doi.org/10.1007/978-3-7091-3972-1_2openalex-snapshot
Paleogeography and historical phytogeography (paleochorology) in the Neophyticum
inferredcites →https://doi.org/10.1007/bf00936909openalex-snapshot
Paleogeography and historical phytogeography (paleochorology) in the Neophyticum
inferredcites →https://doi.org/10.1007/s00606-011-0544-xopenalex-snapshot
Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: the Caryophyllales (angiosperms)
inferredcites →https://doi.org/10.1016/j.jafrearsci.2013.07.011openalex-snapshot
The position of Madagascar within Gondwana and its movements during Gondwana dispersal
inferredcites →https://doi.org/10.1016/j.tplants.2015.06.012openalex-snapshot
Genome skimming for next-generation biodiversity analysis
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.ympev.2005.11.023openalex-snapshot
Comparative analysis of a translocated copy of the trnK intron in carnivorous family Nepenthaceae
inferredcites →https://doi.org/10.1016/j.ympev.2007.01.013openalex-snapshot
Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants
inferredcites →https://doi.org/10.1016/j.ympev.2011.12.011openalex-snapshot
Giant taro and its relatives: A phylogeny of the large genus Alocasia (Araceae) sheds light on Miocene floristic exchange in the Malesian region
inferredcites →https://doi.org/10.1016/j.ympev.2018.04.009openalex-snapshot
Gene tree discordance and coalescent methods support ancient intergeneric hybridisation between Dasymaschalon and Friesodielsia (Annonaceae)
inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot
Ribosomal ITS sequences and plant phylogenetic inference
inferredcites →https://doi.org/10.1038/nature14949openalex-snapshot
Evolution of endemism on a young tropical mountain
inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot
jModelTest 2: more models, new heuristics and parallel computing
inferredcites →https://doi.org/10.1038/nrg2526openalex-snapshot
Effective population size and patterns of molecular evolution and variation
inferredcites →https://doi.org/10.1055/s-2001-12897openalex-snapshot
Molecular Phylogeny of Nepenthaceae Based on Cladistic Analysis of Plastid trnK Intron Sequence Data
inferredcites →https://doi.org/10.1055/s-2006-924676openalex-snapshot
Introduction of a Nuclear Marker for Phylogenetic Analysis of Nepenthaceae
inferredcites →https://doi.org/10.1071/bt00023openalex-snapshot
The breakup history of Gondwana and its impact on pre-Cenozoic floristic provincialism
inferredcites →https://doi.org/10.1093/aob/mct195openalex-snapshot
Capture mechanism in Palaeotropical pitcher plants (Nepenthaceae) is constrained by climate
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/biolinnean/blx142openalex-snapshot
Keeping an eye on coloration: ecological correlates of the evolution of pitcher traits in the genus Nepenthes (Caryophyllales)
inferredcites →https://doi.org/10.1093/genetics/145.3.821openalex-snapshot
The Evolution of Ribosomal DNA Divergent Paralogues and Phylogenetic Implications
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/1755-0998.12246openalex-snapshot
Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family
inferredcites →https://doi.org/10.1111/ddi.12382openalex-snapshot
Phylogenetic analysis of niche divergence reveals distinct evolutionary histories and climate change implications for tropical carnivorous pitcher plants
inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb00119.xopenalex-snapshot
EARLY TERTIARY OUT-OF-INDIA DISPERSAL OF CRYPTERONIACEAE: EVIDENCE FROM PHYLOGENY AND MOLECULAR DATING
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00585.xopenalex-snapshot
A MODEL FOR CHLOROPLAST CAPTURE
inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb00472.xopenalex-snapshot
CALIBRATION OF MOLECULAR CLOCKS AND THE BIOGEOGRAPHIC HISTORY OF CRYPTERONIACEAE
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03166.xopenalex-snapshot
Trap geometry in three giant montane pitcher plant species from Borneo is a function of tree shrew body size
inferredcites →https://doi.org/10.1111/jbi.12405openalex-snapshot
The Sahul–Sunda floristic exchange: dated molecular phylogenies document Cenozoic intercontinental dispersal dynamics
inferredcites →https://doi.org/10.1111/jse.12174openalex-snapshot
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches
inferredcites →https://doi.org/10.1111/nph.13264openalex-snapshot
A metacalibrated time‐tree documents the early rise of flowering plant phylogenetic diversity
inferredcites →https://doi.org/10.1144/sp318.13openalex-snapshot
The Eurasian SE Asian margin as a modern example of an accretionary orogen
inferredcites →https://doi.org/10.1186/s13104-017-2379-1openalex-snapshot
Phylogenetic inferences of Nepenthes species in Peninsular Malaysia revealed by chloroplast (trnL intron) and nuclear (ITS) DNA sequences
inferredcites →https://doi.org/10.12705/661.4openalex-snapshot
Out‐of‐India dispersal of Paliurus (Rhamnaceae) indicated by combined molecular phylogenetic and fossil evidence
inferredcites →https://doi.org/10.12705/666.8openalex-snapshot
Phylogeny of the popcorn flowers: Use of genome skimming to evaluate monophyly and interrelationships in subtribe Amsinckiinae (Boraginaceae)
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.18942/apg.kj00008918921openalex-snapshot
Phylogenetic Analysis of Nepenthaceae, Based on Internal Transcribed Spacer Nuclear Ribosomal DNA Sequences
inferredcites →https://doi.org/10.3389/fevo.2018.00108openalex-snapshot
Phylogeny and Biogeography of Carnivorous Plant Family Nepenthaceae With Reference to the Indian Pitcher Plant Nepenthes Khasiana Reveals an Indian Subcontinent Origin of Nepenthes Colonization in South East Asia During the Miocene Epoch
inferredcites →https://doi.org/10.3732/ajb.0900287openalex-snapshot
Patterns and causes of incongruence between plastid and nuclear Senecioneae (Asteraceae) phylogenies
inferredcites →https://doi.org/10.3732/ajb.1100335openalex-snapshot
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
inferredcites →https://doi.org/10.3732/apps.1400062openalex-snapshot
Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.579.3.1zenodo-depositor-declared
Two noteworthy Calea (Asteraceae: Neurolaeneae) from contact areas of the Atlantic Forest and Cerrado of Brazil
inferred← citeshttps://doi.org/10.11646/phytotaxa.618.2.3zenodo-depositor-declared
Calea × crassa (Neurolaeneae: Asteraceae), a new nothospecies from Paraná state, Brazil
inferred← citeshttps://doi.org/10.1002/aps3.11441openalex-snapshot
HybPhaser: A workflow for the detection and phasing of hybrids in target capture data sets
inferred← citeshttps://doi.org/10.1002/edn3.138openalex-snapshot
Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark
inferred← citeshttps://doi.org/10.1002/tax.13222openalex-snapshot
Plastid phylogenomics with broad taxon sampling provides insights into the generic delimitation of Paraphlomideae (Lamiaceae)
inferred← citeshttps://doi.org/10.1016/j.aquabot.2023.103742openalex-snapshot
Global mitochondrial and chloroplast genome diversity in the threatened aquatic carnivorous plant Aldrovanda vesiculosa
inferred← citeshttps://doi.org/10.1016/j.sajb.2024.02.018openalex-snapshot
Conspectus on endangered carnivorous pitcher plant Nepenthes khasiana Hook.f. emphasizing in-vitro regeneration, pitcher development, and stability in genetic makeup
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106668openalex-snapshot
A phylogenomic analysis of Nepenthes (Nepenthaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107083openalex-snapshot
Phylogenomic analyses based on genome-skimming data reveal cyto-nuclear discordance in the evolutionary history of Cotoneaster (Rosaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107214openalex-snapshot
Introgression is widespread in the radiation of carnivorous Nepenthes pitcher plants
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107332openalex-snapshot
Homoploid hybrids, allopolyploids, and high ploidy levels characterize the evolutionary history of a western North American quillwort (Isoëtes) complex
inferred← citeshttps://doi.org/10.1071/sb24011openalex-snapshot
Navigating phylogenetic conflict and evolutionary inference in plants with target-capture data
inferred← citeshttps://doi.org/10.1071/sb24016openalex-snapshot
Phylogenomics of Australian sundews (Drosera: Droseraceae)
inferred← citeshttps://doi.org/10.1071/sbv32n3_edopenalex-snapshot
Plant systematics and biogeography in the Australasian tropics: part 2
inferred← citeshttps://doi.org/10.1093/botlinnean/boab070openalex-snapshot
Hybridisation: A ‘double-edged sword’ for neotropical plant diversity
inferred← citeshttps://doi.org/10.1101/2020.11.04.363374openalex-snapshot
Revealing the evolutionary history of a reticulate polyploid complex in the genus Isoëtes
inferred← citeshttps://doi.org/10.1111/1755-0998.13586openalex-snapshot
When barcoding fails: Genome chimerization (admixing) and reticulation obscure phylogenetic and taxonomic relationships
inferred← citeshttps://doi.org/10.1111/jse.12910openalex-snapshot
Phylogenomic study of Amorphophallus (Alismatales; Araceae): When plastid DNA gene sequences help to resolve the backbone subgeneric delineation
inferred← citeshttps://doi.org/10.1371/journal.pone.0322885openalex-snapshot
A high quality genome of the common swamp pitcher plant (Nepenthes mirabilis) using PacBio HiFi sequencing
inferred← citeshttps://doi.org/10.1600/036364422x16674053033804openalex-snapshot
The Phylogeny ofErrazurizia(Fabaceae: Amorpheae) and Description of the New Monotypic GenusPictarena
inferred← citeshttps://doi.org/10.1640/0002-8444-110.4.193openalex-snapshot
There and Back Again: Reticulate Evolution in Ceratopteris
inferred← citeshttps://doi.org/10.3390/plants12193356openalex-snapshot
Molecular Phylogenomics Reveals the Deep Evolutionary History of Carnivory across Land Plants
inferred← citeshttps://doi.org/10.55360/cpn511.rn459openalex-snapshot
New Australian Nepenthes taxa published since Allen Lowrie’s Magnum Opus
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