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Multi-scale annotations of chromatin states in 127 human cell-types

https://doi.org/10.1101/2020.12.22.424078
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s10479-011-0841-3openalex-snapshot
Multiobjective evolutionary algorithms to identify highly autocorrelated areas: the case of spatial distribution in financially compromised farms
inferredcites →https://doi.org/10.1016/j.cell.2007.02.005openalex-snapshot
Chromatin Modifications and Their Function
inferredcites →https://doi.org/10.1016/j.cell.2010.09.009openalex-snapshot
Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
inferredcites →https://doi.org/10.1016/j.cell.2013.09.053openalex-snapshot
Super-Enhancers in the Control of Cell Identity and Disease
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.celrep.2016.10.061openalex-snapshot
A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1038/nature09725openalex-snapshot
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature23884openalex-snapshot
The 4D nucleome project
inferredcites →https://doi.org/10.1038/nbt.3157openalex-snapshot
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
inferredcites →https://doi.org/10.1038/ncomms10812openalex-snapshot
Constructing 3D interaction maps from 1D epigenomes
inferredcites →https://doi.org/10.1038/ncomms15011openalex-snapshot
Multi-scale chromatin state annotation using a hierarchical hidden Markov model
inferredcites →https://doi.org/10.1038/nmeth.1906openalex-snapshot
ChromHMM: automating chromatin-state discovery and characterization
inferredcites →https://doi.org/10.1038/nmeth.1937openalex-snapshot
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
inferredcites →https://doi.org/10.1038/s41467-018-06664-6openalex-snapshot
Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features
inferredcites →https://doi.org/10.1038/s41467-019-12954-4openalex-snapshot
Revealing Hi-C subcompartments by imputing inter-chromosomal chromatin interactions
inferredcites →https://doi.org/10.1073/pnas.2008672117openalex-snapshot
Enhancer dependence of cell-type–specific gene expression increases with developmental age
inferredcites →https://doi.org/10.1083/jcb.201807108openalex-snapshot
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
inferredcites →https://doi.org/10.1093/nar/gkz167openalex-snapshot
DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1162/153244303321897735openalex-snapshot
10.1162/153244303321897735
inferredcites →https://doi.org/10.1186/s13059-015-0740-zopenalex-snapshot
Predicting chromatin organization using histone marks
inferredcites →https://doi.org/10.1371/journal.pcbi.1007024openalex-snapshot
Predicting three-dimensional genome organization with chromatin states
inferredcites →https://doi.org/10.48550/arxiv.1201.0490openalex-snapshot
Scikit-learn: Machine Learning in Python

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4648584openalex-extracted
inferred← citeshttps://doi.org/10.1016/j.cels.2024.10.006openalex-snapshot
Systematic analysis identifies a connection between spatial and genomic variations of chromatin states
inferred← citeshttps://doi.org/10.1101/2023.12.11.570452openalex-snapshot
Broad H3K4me3 Domain Is Associated with Spatial Coherence during Mammalian Embryonic Development
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