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https://doi.org/10.2139/ssrn.4648584

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inferredcites →https://doi.org/10.1002/(sici)1526-968x(200004)26:4<225::aid-gene10>3.3.co;2-6openalex-extracted
Identification of a prx1 limb enhancer
inferredcites →https://doi.org/10.1002/cpz1.405openalex-extracted
Analyzing Spatial Transcriptomics Data Using Giotto
inferredcites →https://doi.org/10.1002/dvg.20714openalex-extracted
The role of sensory organs and the forebrain for the development of the craniofacial shape as revealed by Foxg1‐cre‐mediated microRNA loss
inferredcites →https://doi.org/10.1006/dbio.2001.0365openalex-extracted
Hoxb2 and Hoxb4 Act Together to Specify Ventral Body Wall Formation
inferredcites →https://doi.org/10.1007/s12035-018-0995-yopenalex-extracted
NTF3 Is a Novel Target Gene of the Transcription Factor POU3F2 and Is Required for Neuronal Differentiation
inferredcites →https://doi.org/10.1016/0925-4773(94)00343-lopenalex-extracted
Barx1, a new mouse homeodomain transcription factor expressed in cranio-facial ectomesenchyme and the stomach
inferredcites →https://doi.org/10.1016/j.cell.2006.02.041openalex-extracted
A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2007.05.009openalex-extracted
High-Resolution Profiling of Histone Methylations in the Human Genome
inferredcites →https://doi.org/10.1016/j.cell.2023.04.006openalex-extracted
Spatially resolved epigenomic profiling of single cells in complex tissues
inferredcites →https://doi.org/10.1016/j.celrep.2017.05.004openalex-extracted
HAND2 Target Gene Regulatory Networks Control Atrioventricular Canal and Cardiac Valve Development
inferredcites →https://doi.org/10.1016/j.immuni.2008.12.009openalex-extracted
Global Mapping of H3K4me3 and H3K27me3 Reveals Specificity and Plasticity in Lineage Fate Determination of Differentiating CD4+ T Cells
inferredcites →https://doi.org/10.1016/j.modgep.2006.10.006openalex-extracted
The zebrafish orphan nuclear receptor genes nr2e1 and nr2e3 are expressed in developing eye and forebrain
inferredcites →https://doi.org/10.1016/j.tig.2013.05.010openalex-extracted
Human housekeeping genes, revisited
inferredcites →https://doi.org/10.1016/j.ydbio.2005.06.017openalex-extracted
Function and regulation of Alx4 in limb development: Complex genetic interactions with Gli3 and Shh
inferredcites →https://doi.org/10.1016/j.ydbio.2006.03.027openalex-extracted
Hearts and bones: Shared regulatory mechanisms in heart valve, cartilage, tendon, and bone development
inferredcites →https://doi.org/10.1016/j.ydbio.2006.06.055openalex-extracted
Pitx1 determines the morphology of muscle, tendon, and bones of the hindlimb
inferredcites →https://doi.org/10.1016/j.ydbio.2008.03.013openalex-extracted
Loss of both GATA4 and GATA6 blocks cardiac myocyte differentiation and results in acardia in mice
inferredcites →https://doi.org/10.1038/75556openalex-extracted
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nature14248openalex-extracted
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature19360openalex-extracted
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition
inferredcites →https://doi.org/10.1038/nature19362openalex-extracted
Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
inferredcites →https://doi.org/10.1038/nbt.1754openalex-extracted
Integrative genomics viewer
inferredcites →https://doi.org/10.1038/ncomms15011openalex-extracted
Multi-scale chromatin state annotation using a hierarchical hidden Markov model
inferredcites →https://doi.org/10.1038/ng.3385openalex-extracted
Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
inferredcites →https://doi.org/10.1038/ng0494-348openalex-extracted
Msx1 deficient mice exhibit cleft palate and abnormalities of craniofacial and tooth development
inferredcites →https://doi.org/10.1038/nrg887openalex-extracted
Chromatin modification and epigenetic reprogramming in mammalian development
inferredcites →https://doi.org/10.1038/s41379-022-01113-8openalex-extracted
Spatial heterogeneity in DNA methylation and chromosomal alterations in diffuse gliomas and meningiomas
inferredcites →https://doi.org/10.1038/s41576-022-00509-1openalex-extracted
Characterizing cis-regulatory elements using single-cell epigenomics
inferredcites →https://doi.org/10.1038/s41586-020-03145-zopenalex-extracted
Regulatory genomic circuitry of human disease loci by integrative epigenomics
inferredcites →https://doi.org/10.1038/s41586-020-2093-3openalex-extracted
An atlas of dynamic chromatin landscapes in mouse fetal development
inferredcites →https://doi.org/10.1038/s41586-022-05094-1openalex-extracted
Spatial profiling of chromatin accessibility in mouse and human tissues
inferredcites →https://doi.org/10.1038/s41586-023-05795-1openalex-extracted
Spatial epigenome–transcriptome co-profiling of mammalian tissues
inferredcites →https://doi.org/10.1038/s41587-022-01603-9openalex-extracted
Solid-phase capture and profiling of open chromatin by spatial ATAC
inferredcites →https://doi.org/10.1038/s41588-021-00790-6openalex-extracted
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
inferredcites →https://doi.org/10.1038/s41592-023-01884-1openalex-extracted
Simultaneous profiling of spatial gene expression and chromatin accessibility during mouse brain development
inferredcites →https://doi.org/10.1038/s41593-022-01063-zopenalex-extracted
Meningeal lymphatic vessels mediate neurotropic viral drainage from the central nervous system
inferredcites →https://doi.org/10.1038/s41594-023-01060-1openalex-extracted
Droplet-based single-cell joint profiling of histone modifications and transcriptomes
inferredcites →https://doi.org/10.1073/pnas.0705464104openalex-extracted
LIM-homeodomain proteins Lhx1 and Lhx5, and their cofactor Ldb1, control Purkinje cell differentiation in the developing cerebellum
inferredcites →https://doi.org/10.1073/pnas.1317023110openalex-extracted
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
inferredcites →https://doi.org/10.1073/pnas.1504783112openalex-extracted
Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain
inferredcites →https://doi.org/10.1083/jcb.202103078openalex-extracted
High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)
inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-extracted
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-extracted
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btv325openalex-extracted
Diffusion maps for high-dimensional single-cell analysis of differentiation data
inferredcites →https://doi.org/10.1093/bioinformatics/btv715openalex-extracted
destiny : diffusion maps for large-scale single-cell data in R
inferredcites →https://doi.org/10.1093/nar/gkt167openalex-extracted
GATA-1 genome-wide occupancy associates with distinct epigenetic profiles in mouse fetal liver erythropoiesis
inferredcites →https://doi.org/10.1101/2020.12.22.424078openalex-extracted
Multi-scale annotations of chromatin states in 127 human cell-types
inferredcites →https://doi.org/10.1101/gad.11.8.1048openalex-extracted
GATA4 transcription factor is required for ventral morphogenesis and heart tube formation.
inferredcites →https://doi.org/10.1101/gad.12.17.2735openalex-extracted
Pax9 -deficient mice lack pharyngeal pouch derivatives and teeth and exhibit craniofacial and limb abnormalities
inferredcites →https://doi.org/10.1101/gad.988402openalex-extracted
The Dlx5 and Dlx6 homeobox genes are essential for craniofacial, axial, and appendicular skeletal development
inferredcites →https://doi.org/10.1109/34.121791openalex-extracted
A method for registration of 3-D shapes
inferredcites →https://doi.org/10.1111/dgd.12367openalex-extracted
Evolutionary conservation and conversion of Foxg1 function in brain development
inferredcites →https://doi.org/10.1126/science.1207194openalex-extracted
The Dynamic Architecture of Hox Gene Clusters
inferredcites →https://doi.org/10.1126/science.aau0730openalex-extracted
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
inferredcites →https://doi.org/10.1126/science.abg7216openalex-extracted
Spatial-CUT&Tag: Spatially resolved chromatin modification profiling at the cellular level
inferredcites →https://doi.org/10.1126/science.abj1966openalex-extracted
Single-cell nuclear architecture across cell types in the mouse brain
inferredcites →https://doi.org/10.1182/blood-2006-02-003087openalex-extracted
The transcription factors Scl and Lmo2 act together during development of the hemangioblast in zebrafish
inferredcites →https://doi.org/10.1182/blood-2009-01-200048openalex-extracted
The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development
inferredcites →https://doi.org/10.1186/1471-2105-6-144openalex-extracted
PAGE: Parametric Analysis of Gene Set Enrichment
inferredcites →https://doi.org/10.1186/s13059-021-02286-2openalex-extracted
Giotto: a toolbox for integrative analysis and visualization of spatial expression data
inferredcites →https://doi.org/10.1186/s13148-021-01126-1openalex-extracted
The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes
inferredcites →https://doi.org/10.48550/arxiv.1802.03426openalex-extracted
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
inferredcites →https://doi.org/10.7916/d84x568jopenalex-extracted
PAGE: Parametric Analysis of Gene Set Enrichment
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