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Genetic variability associated with OAS1 expression in myeloid cells increases the risk of Alzheimer’s disease and severe COVID-19 outcomes

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Neurologic Manifestations of Hospitalized Patients With Coronavirus Disease 2019 in Wuhan, China
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Central nervous system involvement by severe acute respiratory syndrome coronavirus‐2 (SARS‐CoV‐2)
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RNA regulation of the antiviral protein 2′‐5′‐oligoadenylate synthetase
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Dissecting the genetic relationship between cardiovascular risk factors and Alzheimer’s disease
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Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysis
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Type-I interferon pathway in neuroinflammation and neurodegeneration: focus on Alzheimer’s disease
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Pathogenesis and promising therapeutics of Alzheimer disease through eIF2α pathway and correspondent kinases
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Imbalance of Microglial TLR4/TREM2 in LPS-Treated APP/PS1 Transgenic Mice: A Potential Link Between Alzheimer’s Disease and Systemic Inflammation
inferredcites →https://doi.org/10.1016/j.cell.2017.05.018openalex-snapshot
A Unique Microglia Type Associated with Restricting Development of Alzheimer’s Disease
inferredcites →https://doi.org/10.1016/j.cell.2018.10.022openalex-snapshot
Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot
Comprehensive Integration of Single-Cell Data
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Synergism of TNF-α and IFN-γ Triggers Inflammatory Cell Death, Tissue Damage, and Mortality in SARS-CoV-2 Infection and Cytokine Shock Syndromes
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Diverse Brain Myeloid Expression Profiles Reveal Distinct Microglial Activation States and Aspects of Alzheimer’s Disease Not Evident in Mouse Models
inferredcites →https://doi.org/10.1016/j.celrep.2019.03.099openalex-snapshot
The Major Risk Factors for Alzheimer’s Disease: Age, Sex, and Genes Modulate the Microglia Response to Aβ Plaques
inferredcites →https://doi.org/10.1016/j.chom.2020.07.005openalex-snapshot
Retrospective Multicenter Cohort Study Shows Early Interferon Therapy Is Associated with Favorable Clinical Responses in COVID-19 Patients
inferredcites →https://doi.org/10.1016/j.clim.2020.108614openalex-snapshot
Laboratory biomarkers associated with COVID-19 severity and management
inferredcites →https://doi.org/10.1016/j.immuni.2017.08.008openalex-snapshot
The TREM2-APOE Pathway Drives the Transcriptional Phenotype of Dysfunctional Microglia in Neurodegenerative Diseases
inferredcites →https://doi.org/10.1016/j.it.2016.01.006openalex-snapshot
Type I/II Interferon Balance in the Regulation of Brain Physiology and Pathology
inferredcites →https://doi.org/10.1016/j.jneuroim.2011.06.006openalex-snapshot
Parenchymal accumulation of CD163+ macrophages/microglia in multiple sclerosis brains
inferredcites →https://doi.org/10.1016/j.meegid.2020.104498openalex-snapshot
Functional prediction and comparative population analysis of variants in genes for proteases and innate immunity related to SARS-CoV-2 infection
inferredcites →https://doi.org/10.1016/j.neurobiolaging.2016.03.004openalex-snapshot
Opposing roles of the triggering receptor expressed on myeloid cells 2 and triggering receptor expressed on myeloid cells-like transcript 2 in microglia activation
inferredcites →https://doi.org/10.1016/j.neuron.2016.05.003openalex-snapshot
TREM2 Haplodeficiency in Mice and Humans Impairs the Microglia Barrier Function Leading to Decreased Amyloid Compaction and Severe Axonal Dystrophy
inferredcites →https://doi.org/10.1016/j.neuron.2019.06.010openalex-snapshot
TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer’s Disease
inferredcites →https://doi.org/10.1016/j.tins.2019.03.003openalex-snapshot
A Unifying Hypothesis for Alzheimer’s Disease: From Plaques to Neurodegeneration
inferredcites →https://doi.org/10.1016/j.tins.2020.10.008openalex-snapshot
Signaling by cGAS–STING in Neurodegeneration, Neuroinflammation, and Aging
inferredcites →https://doi.org/10.1016/j.virusres.2014.09.011openalex-snapshot
Human coronaviruses: Viral and cellular factors involved in neuroinvasiveness and neuropathogenesis
inferredcites →https://doi.org/10.1016/j.xcrm.2020.100166openalex-snapshot
A distinct innate immune signature marks progression from mild to severe COVID-19
inferredcites →https://doi.org/10.1016/s0140-6736(20)30183-5openalex-snapshot
Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China
inferredcites →https://doi.org/10.1016/s1474-4422(20)30308-2openalex-snapshot
Neuropathology of patients with COVID-19 in Germany: a post-mortem case series
inferredcites →https://doi.org/10.1017/s095026882000179xopenalex-snapshot
Risk factors of severe cases with COVID-19: a meta-analysis
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
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Neurotoxic reactive astrocytes are induced by activated microglia
inferredcites →https://doi.org/10.1038/nbt.2859openalex-snapshot
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
inferredcites →https://doi.org/10.1038/ng.2802openalex-snapshot
Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease
inferredcites →https://doi.org/10.1038/ng.3916openalex-snapshot
Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease
inferredcites →https://doi.org/10.1038/nmeth.4402openalex-snapshot
Reversed graph embedding resolves complex single-cell trajectories
inferredcites →https://doi.org/10.1038/nri2314openalex-snapshot
Interferon-inducible antiviral effectors
inferredcites →https://doi.org/10.1038/s41467-017-00366-1openalex-snapshot
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
inferredcites →https://doi.org/10.1038/s41467-020-19737-2openalex-snapshot
Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease
inferredcites →https://doi.org/10.1038/s41467-021-26888-3openalex-snapshot
COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types
inferredcites →https://doi.org/10.1038/s41576-019-0151-1openalex-snapshot
DNA sensing by the cGAS–STING pathway in health and disease
inferredcites →https://doi.org/10.1038/s41577-020-00429-3openalex-snapshot
The type I interferon response in COVID-19: implications for treatment
inferredcites →https://doi.org/10.1038/s41586-019-1195-2openalex-snapshot
Single-cell transcriptomic analysis of Alzheimer’s disease
inferredcites →https://doi.org/10.1038/s41586-019-1769-zopenalex-snapshot
NLRP3 inflammasome activation drives tau pathology
inferredcites →https://doi.org/10.1038/s41586-020-03065-yopenalex-snapshot
Genetic mechanisms of critical illness in COVID-19
inferredcites →https://doi.org/10.1038/s41586-021-03710-0openalex-snapshot
Dysregulation of brain and choroid plexus cell types in severe COVID-19
inferredcites →https://doi.org/10.1038/s41588-018-0046-7openalex-snapshot
Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response
inferredcites →https://doi.org/10.1038/s41588-019-0358-2openalex-snapshot
Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing
inferredcites →https://doi.org/10.1038/s41593-018-0296-9openalex-snapshot
Loss of TREM2 function increases amyloid seeding but reduces plaque-associated ApoE
inferredcites →https://doi.org/10.1038/s41593-019-0433-0openalex-snapshot
TREM2 function impedes tau seeding in neuritic plaques
inferredcites →https://doi.org/10.1038/s43587-021-00149-wopenalex-snapshot
Alzheimer’s disease modification mediated by bone marrow-derived macrophages via a TREM2-independent pathway in mouse model of amyloidosis
inferredcites →https://doi.org/10.1073/pnas.1218528110openalex-snapshot
Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1
inferredcites →https://doi.org/10.1073/pnas.1519657113openalex-snapshot
Activation of RNase L is dependent on OAS3 expression during infection with diverse human viruses
inferredcites →https://doi.org/10.1073/pnas.1722613115openalex-snapshot
Local apoptotic-like mechanisms underlie complement-mediated synaptic pruning
inferredcites →https://doi.org/10.1073/pnas.2017742118openalex-snapshot
Prior activation state shapes the microglia response to antihuman TREM2 in a mouse model of Alzheimer’s disease
inferredcites →https://doi.org/10.1073/pnas.2026309118openalex-snapshot
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
inferredcites →https://doi.org/10.1074/jbc.m111.238477openalex-snapshot
Binding with Nucleic Acids or Glycosaminoglycans Converts Soluble Protein Oligomers to Amyloid
inferredcites →https://doi.org/10.1074/jbc.m115.653113openalex-snapshot
The Role of Phosphodiesterase 12 (PDE12) as a Negative Regulator of the Innate Immune Response and the Discovery of Antiviral Inhibitors
inferredcites →https://doi.org/10.1086/429391openalex-snapshot
Variation in Antiviral 2′,5′-Oligoadenylate Synthetase (2′5′AS) Enzyme Activity Is Controlled by a Single-Nucleotide Polymorphism at a Splice-Acceptor Site in the OAS1 Gene
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btq419openalex-snapshot
LocusZoom: regional visualization of genome-wide association scan results
inferredcites →https://doi.org/10.1093/bioinformatics/btv402openalex-snapshot
LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants
inferredcites →https://doi.org/10.1093/brain/awaa240openalex-snapshot
The emerging spectrum of COVID-19 neurology: clinical, radiological and laboratory findings
inferredcites →https://doi.org/10.1093/brain/awz055openalex-snapshot
Multiple sclerosis: effect of beta interferon treatment on survival
inferredcites →https://doi.org/10.1093/braincomms/fcaa205openalex-snapshot
Frequent neurocognitive deficits after recovery from mild COVID-19
inferredcites →https://doi.org/10.1093/braincomms/fcz022openalex-snapshot
Genetic variability in response to amyloid beta deposition influences Alzheimer’s disease risk
inferredcites →https://doi.org/10.1093/cid/ciaa248openalex-snapshot
Dysregulation of Immune Response in Patients With Coronavirus 2019 (COVID-19) in Wuhan, China
inferredcites →https://doi.org/10.1093/hmg/ddaa209openalex-snapshot
Trem2 promotes anti-inflammatory responses in microglia and is suppressed under pro-inflammatory conditions
inferredcites →https://doi.org/10.1093/hmg/ddz163openalex-snapshot
Genes, pathways and risk prediction in Alzheimer’s disease
inferredcites →https://doi.org/10.1093/nar/gkaa513openalex-snapshot
Human OAS1 activation is highly dependent on both RNA sequence and context of activating RNA motifs
inferredcites →https://doi.org/10.1101/2020.12.21.423830openalex-snapshot
Single-cell RNA-sequencing reveals pervasive but highly cell type-specific genetic ancestry effects on the response to viral infection
inferredcites →https://doi.org/10.1101/437657openalex-snapshot
Genetic variability in response to Aβ deposition influences Alzheimer’s risk
inferredcites →https://doi.org/10.1101/gad.208926.112openalex-snapshot
FoxO6 regulates memory consolidation and synaptic function
inferredcites →https://doi.org/10.1101/lm.051839.120openalex-snapshot
Identifying the molecular systems that influence cognitive resilience to Alzheimer's disease in genetically diverse mice
inferredcites →https://doi.org/10.1126/science.aad8373openalex-snapshot
Complement and microglia mediate early synapse loss in Alzheimer mouse models
inferredcites →https://doi.org/10.1126/science.abc6027openalex-snapshot
Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients
inferredcites →https://doi.org/10.1126/science.abd4570openalex-snapshot
Inborn errors of type I IFN immunity in patients with life-threatening COVID-19
inferredcites →https://doi.org/10.1126/science.abd4585openalex-snapshot
Autoantibodies against type I IFNs in patients with life-threatening COVID-19
inferredcites →https://doi.org/10.1126/sciimmunol.abd1554openalex-snapshot
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19
inferredcites →https://doi.org/10.1128/aac.01061-20openalex-snapshot
A Randomized Clinical Trial of the Efficacy and Safety of Interferon β-1a in Treatment of Severe COVID-19
inferredcites →https://doi.org/10.1128/jvi.01003-10openalex-snapshot
Extracellular 2′-5′ Oligoadenylate Synthetase Stimulates RNase L-Independent Antiviral Activity: a Novel Mechanism of Virus-Induced Innate Immunity
inferredcites →https://doi.org/10.1128/jvi.01471-07openalex-snapshot
Viral Encounters with 2′,5′-Oligoadenylate Synthetase and RNase L during the Interferon Antiviral Response
inferredcites →https://doi.org/10.1136/jmg.2005.035212openalex-snapshot
Type 1 diabetes and the OAS gene cluster: association with splicing polymorphism or haplotype?
inferredcites →https://doi.org/10.1172/jci133737openalex-snapshot
Type I interferon response drives neuroinflammation and synapse loss in Alzheimer disease
inferredcites →https://doi.org/10.1172/jci137244openalex-snapshot
Clinical and immunological features of severe and moderate coronavirus disease 2019
inferredcites →https://doi.org/10.1177/1073858420956905openalex-snapshot
Anosmia in COVID-19: Underlying Mechanisms and Assessment of an Olfactory Route to Brain Infection
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/1471-2334-6-106openalex-snapshot
Association of SARS susceptibility with single nucleic acid polymorphisms of OAS1 and MxA genes: a case-control study
inferredcites →https://doi.org/10.1186/2051-5960-2-21openalex-snapshot
Phenotypic profile of alternative activation marker CD163 is different in Alzheimer’s and Parkinson’s disease
inferredcites →https://doi.org/10.1186/gb-2002-3-7-research0034openalex-snapshot
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
inferredcites →https://doi.org/10.1186/s12918-017-0420-6openalex-snapshot
An additional k-means clustering step improves the biological features of WGCNA gene co-expression networks
inferredcites →https://doi.org/10.1186/s13024-017-0184-xopenalex-snapshot
Late onset Alzheimer’s disease genetics implicates microglial pathways in disease risk
inferredcites →https://doi.org/10.1186/s13024-018-0280-6openalex-snapshot
The Trem2 R47H Alzheimer’s risk variant impairs splicing and reduces Trem2 mRNA and protein in mice but not in humans
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-019-1874-1openalex-snapshot
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
inferredcites →https://doi.org/10.1186/s13073-015-0232-5openalex-snapshot
The age factor in Alzheimer’s disease
inferredcites →https://doi.org/10.1186/s40478-018-0636-8openalex-snapshot
Forced turnover of aged microglia induces an intermediate phenotype but does not rebalance CNS environmental cues driving priming to immune challenge
inferredcites →https://doi.org/10.1212/wnl.0000000000009937openalex-snapshot
Neurologic manifestations in hospitalized patients with COVID-19
inferredcites →https://doi.org/10.12659/msm.928996openalex-snapshot
Long-Term Respiratory and Neurological Sequelae of COVID-19
inferredcites →https://doi.org/10.15252/embj.2020105380openalex-snapshot
Local externalization of phosphatidylserine mediates developmental synaptic pruning by microglia
inferredcites →https://doi.org/10.3233/jad-215055openalex-snapshot
Alzheimer’s Disease Variant Portal: A Catalog of Genetic Findings for Alzheimer’s Disease
inferredcites →https://doi.org/10.3389/fgene.2020.00157openalex-snapshot
LDlinkR: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations
inferredcites →https://doi.org/10.3389/fimmu.2017.00029openalex-snapshot
Canonical and Non-Canonical Aspects of JAK–STAT Signaling: Lessons from Interferons for Cytokine Responses
inferredcites →https://doi.org/10.3389/fncel.2017.00056openalex-snapshot
Divergent Neuroinflammatory Regulation of Microglial TREM Expression and Involvement of NF-κB
inferredcites →https://doi.org/10.3389/fncel.2018.00386openalex-snapshot
Neurologic Alterations Due to Respiratory Virus Infections
inferredcites →https://doi.org/10.3389/fneur.2020.573095openalex-snapshot
The Spatial and Cell-Type Distribution of SARS-CoV-2 Receptor ACE2 in the Human and Mouse Brains
inferredcites →https://doi.org/10.5483/bmbrep.2019.52.2.129openalex-snapshot
OAS1 and OAS3 negatively regulate the expression of chemokines and interferon-responsive genes in human macrophages
inferredcites →https://doi.org/10.7554/elife.54083openalex-snapshot
Fibrillar Aβ triggers microglial proteome alterations and dysfunction in Alzheimer mouse models
inferredcites →https://doi.org/10.7892/boris.125653openalex-snapshot
Loss of TREM2 function increases amyloid seeding but reduces plaque-associated ApoE

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.dscb.2021.100022openalex-snapshot
FYN, SARS-CoV-2, and IFITM3 in the neurobiology of Alzheimer's disease
inferred← citeshttps://doi.org/10.2174/0929867329666221003101548openalex-snapshot
COVID-19 and Alzheimer's Disease: Neuroinflammation, Oxidative Stress, Ferroptosis, and Mechanisms Involved
inferred← citeshttps://doi.org/10.3390/cimb46050277openalex-snapshot
SARS-CoV-2-Induced Type I Interferon Signaling Dysregulation in Olfactory Networks Implications for Alzheimer’s Disease
inferred← citeshttps://doi.org/10.3390/jcm15062189openalex-snapshot
Overexpression of OAS Genes in Severe COVID-19: A Cross-Sectional Study of Hospitalized Patients Infected with Delta and Omicron Variants
inferred← citeshttps://doi.org/10.3390/jpm15040156openalex-snapshot
Genetic Predictors of Paxlovid Treatment Response: The Role of IFNAR2, OAS1, OAS3, and ACE2 in COVID-19 Clinical Course
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