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Genome-wide identification of sexual-reproduction genes in fission yeast via transposon-insertion sequencing

https://doi.org/10.1101/2021.08.31.458362

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Positional cloning and characterization of mouse mei8 , a disrupted allele of the meiotic cohesin Rec8

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Growth arrest and chromosome instability in aneuploid yeast

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Isolation of heterothallic haploid and auxotrophic mutants of Schizosaccharomyces japonicus

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New heterologous modules for classical or PCR‐based gene disruptions in Saccharomyces cerevisiae

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Genetic Analysis of Meiotic Recombination in Schizosaccharomyces pombe

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High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier

inferredcites →https://doi.org/10.1007/bf00419871openalex-snapshot

Genetic mapping of eleven spo genes essential for ascospore formation in the fission yeast Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1007/bf00433721openalex-snapshot

Genes involved in meiosis and sporulation of a yeast

inferredcites →https://doi.org/10.1007/s00294-017-0694-7openalex-snapshot

Sporulation: how to survive on planet Earth (and beyond)

inferredcites →https://doi.org/10.1007/s00438-003-0820-8openalex-snapshot

The phospholipase B homolog Plb1 is a mediator of osmotic stress response and of nutrient-dependent repression of sexual differentiation in the fission yeast Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1016/j.celrep.2020.01.094openalex-snapshot

Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation

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Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

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A Large-Scale Screen in S. pombe Identifies Seven Novel Genes Required for Critical Meiotic Events

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The parasexual lifestyle of Candida albicans

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New and old ways to control meiotic recombination

inferredcites →https://doi.org/10.1016/s0092-8674(00)81876-0openalex-snapshot

Meiosis-Specific DNA Double-Strand Breaks Are Catalyzed by Spo11, a Member of a Widely Conserved Protein Family

inferredcites →https://doi.org/10.1016/s0960-9822(01)00274-3openalex-snapshot

A screen for genes required for meiosis and spore formation based on whole-genome expression

inferredcites →https://doi.org/10.1038/nature14568openalex-snapshot

Live imaging RNAi screen reveals genes essential for meiosis in mammalian oocytes

inferredcites →https://doi.org/10.1038/nbt.1628openalex-snapshot

Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1038/ncomms10740openalex-snapshot

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

inferredcites →https://doi.org/10.1038/ng951openalex-snapshot

The transcriptional program of meiosis and sporulation in fission yeast

inferredcites →https://doi.org/10.1038/nmeth.1377openalex-snapshot

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

inferredcites →https://doi.org/10.1038/nrmicro3033openalex-snapshot

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

inferredcites →https://doi.org/10.1038/s41467-019-13719-9openalex-snapshot

Droplet Tn-Seq combines microfluidics with Tn-Seq for identifying complex single-cell phenotypes

inferredcites →https://doi.org/10.1038/s41598-018-28217-zopenalex-snapshot

Genome-Wide Determination of Gene Essentiality by Transposon Insertion Sequencing in Yeast Pichia pastoris

inferredcites →https://doi.org/10.1038/srep20856openalex-snapshot

Identification of novel secreted fatty acids that regulate nitrogen catabolite repression in fission yeast

inferredcites →https://doi.org/10.1046/j.1356-9597.2001.00511.xopenalex-snapshot

Meu10 is required for spore wall maturation in Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1073/pnas.0906627106openalex-snapshot

Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung

inferredcites →https://doi.org/10.1073/pnas.1501725112openalex-snapshot

Sex is a ubiquitous, ancient, and inherent attribute of eukaryotic life

inferredcites →https://doi.org/10.1073/pnas.81.11.3481openalex-snapshot

Genes required for initiation and resolution steps of mating-type switching in fission yeast.

inferredcites →https://doi.org/10.1074/jbc.m112.411165openalex-snapshot

The SAGA Histone Acetyltransferase Complex Regulates Leucine Uptake through the Agp3 Permease in Fission Yeast

inferredcites →https://doi.org/10.1091/mbc.e09-12-0997openalex-snapshot

Mug28, a Meiosis-specific Protein ofSchizosaccharomyces pombe, Regulates Spore Wall Formation

inferredcites →https://doi.org/10.1091/mbc.e13-12-0731openalex-snapshot

The fission yeast spore is coated by a proteinaceous surface layer comprising mainly Isp3

inferredcites →https://doi.org/10.1093/bioinformatics/btt266openalex-snapshot

FYPO: the fission yeast phenotype ontology

inferredcites →https://doi.org/10.1093/genetics/123.1.45openalex-snapshot

Meiotic recombination-deficient mutants of Schizosaccharomyces pombe.

inferredcites →https://doi.org/10.1093/genetics/136.3.769openalex-snapshot

Transient, meiosis-induced expression of the rec6 and rec12 genes of Schizosaccharomyces pombe.

inferredcites →https://doi.org/10.1093/genetics/136.3.887openalex-snapshot

A cis-acting locus that promotes crossing over between X chromosomes in Caenorhabditis elegans.

inferredcites →https://doi.org/10.1093/genetics/156.2.617openalex-snapshot

Caenorhabditis elegans msh-5 Is Required for Both Normal and Radiation-Induced Meiotic Crossing Over but Not for Completion of Meiosis

inferredcites →https://doi.org/10.1093/genetics/163.1.47openalex-snapshot

Large-Scale Functional Genomic Analysis of Sporulation and Meiosis in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1093/genetics/163.3.857openalex-snapshot

Nonrandom Homolog Segregation at Meiosis I in Schizosaccharomyces pombe Mutants Lacking Recombination

inferredcites →https://doi.org/10.1093/genetics/60.3.525openalex-snapshot

MUTANTS AFFECTING MEIOSIS IN NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER

inferredcites →https://doi.org/10.1093/genetics/61.1.79openalex-snapshot

THE GENETIC CONTROL OF SPORULATION IN SACCHAROMYCES I. THE ISOLATION OF TEMPERATURE-SENSITIVE SPORULATION-DEFICIENT MUTANTS

inferredcites →https://doi.org/10.1093/genetics/76.2.255openalex-snapshot

MUTATIONS AFFECTING SEXUAL CONJUGATION AND RELATED PROCESSES IN SACCHAROMYCES CEREVISIAE. I. ISOLATION AND PHENOTYPIC CHARACTERIZATION OF NONMATING MUTANTS

inferredcites →https://doi.org/10.1093/genetics/76.2.273openalex-snapshot

MUTATIONS AFFECTING SEXUAL CONJUGATION AND RELATED PROCESSES IN SACCHAROMYCES CEREVISIAE. II. GENETIC ANALYSIS OF NONMATING MUTANTS

inferredcites →https://doi.org/10.1093/molbev/msz052openalex-snapshot

Killer Meiotic Drive and Dynamic Evolution of the wtf Gene Family

inferredcites →https://doi.org/10.1093/molbev/msz113openalex-snapshot

Fitness Landscape of the Fission Yeast Genome

inferredcites →https://doi.org/10.1093/nar/gkr853openalex-snapshot

PomBase: a comprehensive online resource for fission yeast

inferredcites →https://doi.org/10.1093/nar/gky448openalex-snapshot

HMMER web server: 2018 update

inferredcites →https://doi.org/10.1093/nar/gky961openalex-snapshot

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information

inferredcites →https://doi.org/10.1095/biolreprod.103.019877openalex-snapshot

Toward the Genetics of Mammalian Reproduction: Induction and Mapping of Gametogenesis Mutants in Mice1

inferredcites →https://doi.org/10.1101/866483openalex-snapshot

Exploiting homologous recombination increases SATAY efficiency for loss- and gain-of-function screening

inferredcites →https://doi.org/10.1101/cshperspect.a016154openalex-snapshot

Origins of Eukaryotic Sexual Reproduction

inferredcites →https://doi.org/10.1101/gr.097097.109openalex-snapshot

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

inferredcites →https://doi.org/10.1101/gr.232330.117openalex-snapshot

Transposon insertional mutagenesis in Saccharomyces uvarum reveals trans -acting effects influencing species-dependent essential genes

inferredcites →https://doi.org/10.1109/iccv.2017.322openalex-snapshot

Mask R-CNN

inferredcites →https://doi.org/10.1111/j.1567-1364.2010.00657.xopenalex-snapshot

Schizosaccharomyces cryophilus sp. nov., a new species of fission yeast

inferredcites →https://doi.org/10.1111/j.1742-4658.2009.07204.xopenalex-snapshot

A large complex mediated by Moc1, Moc2 and Cpc2 regulates sexual differentiation in fission yeast

inferredcites →https://doi.org/10.1126/science.1094220openalex-snapshot

A Genome-Wide Screen Identifies Genes Required for Centromeric Cohesion

inferredcites →https://doi.org/10.1126/science.1219518openalex-snapshot

Meiosis-Specific Noncoding RNA Mediates Robust Pairing of Homologous Chromosomes in Meiosis

inferredcites →https://doi.org/10.1126/science.285.5429.901openalex-snapshot

Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis

inferredcites →https://doi.org/10.1126/scitranslmed.3004404openalex-snapshot

Hidden Killers: Human Fungal Infections

inferredcites →https://doi.org/10.1128/jb.175.10.3139-3145.1993openalex-snapshot

Amplification of the Bacillus subtilis maf gene results in arrested septum formation

inferredcites →https://doi.org/10.1128/mbio.02048-18openalex-snapshot

Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida albicans

inferredcites →https://doi.org/10.1128/mmbr.00009-21openalex-snapshot

Pneumocystis Mating-Type Locus and Sexual Cycle during Infection

inferredcites →https://doi.org/10.1371/journal.pgen.1000654openalex-snapshot

A High Throughput Genetic Screen Identifies New Early Meiotic Recombination Functions in Arabidopsis thaliana

inferredcites →https://doi.org/10.1371/journal.pgen.1008350openalex-snapshot

Dramatically diverse Schizosaccharomyces pombe wtf meiotic drivers all display high gamete-killing efficiency

inferredcites →https://doi.org/10.1371/journal.pone.0008524openalex-snapshot

Echinocandin Treatment of Pneumocystis Pneumonia in Rodent Models Depletes Cysts Leaving Trophic Burdens That Cannot Transmit the Infection

inferredcites →https://doi.org/10.1534/g3.114.011049openalex-snapshot

A Genome-Wide Screen for Sporulation-Defective Mutants inSchizosaccharomyces pombe

inferredcites →https://doi.org/10.1534/genetics.113.152744openalex-snapshot

Integration Profiling of Gene Function With Dense Maps of Transposon Integration

inferredcites →https://doi.org/10.1534/genetics.117.300527openalex-snapshot

Genes Important for Schizosaccharomyces pombe Meiosis Identified Through a Functional Genomics Screen

inferredcites →https://doi.org/10.18632/aging.101381openalex-snapshot

Mammalian oogenesis and female reproductive aging

inferredcites →https://doi.org/10.3390/jof6040284openalex-snapshot

The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation

inferredcites →https://doi.org/10.4161/fly.4720openalex-snapshot

A Germline Clone Screen for Meiotic Mutants inDrosophila melanogaster

inferredcites →https://doi.org/10.48550/arxiv.1912.01703openalex-snapshot

PyTorch: An Imperative Style, High-Performance Deep Learning Library

inferredcites →https://doi.org/10.7554/elife.02630openalex-snapshot

Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast

inferredcites →https://doi.org/10.7554/elife.23570openalex-snapshot

Functional mapping of yeast genomes by saturated transposition

inferredcites →https://doi.org/10.7554/elife.26033openalex-snapshot

wtf genes are prolific dual poison-antidote meiotic drivers

inferredcites →https://doi.org/10.7554/elife.26057openalex-snapshot

A large gene family in fission yeast encodes spore killers that subvert Mendel’s law

inferredcites →https://doi.org/10.7554/elife.57936openalex-snapshot

Atypical meiosis can be adaptive in outcrossed Schizosaccharomyces pombe due to wtf meiotic drivers

inferredcites →https://doi.org/10.7554/elife.70812openalex-snapshot

Diverse mating phenotypes impact the spread of wtf meiotic drivers in Schizosaccharomyces pombe

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.gde.2022.101963openalex-snapshot

Exploring conditional gene essentiality through systems genetics approaches in yeast

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