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PomBase: a comprehensive online resource for fission yeast

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-662-10360-9openalex-snapshot

The Molecular Biology of Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1038/75556openalex-snapshot

Gene Ontology: tool for the unification of biology

inferredcites →https://doi.org/10.1038/nature724openalex-snapshot

The genome sequence of Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1038/nbt0808-864openalex-snapshot

The PSI-MOD community standard for representation of protein modification data

inferredcites →https://doi.org/10.1038/nbt1346openalex-snapshot

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

inferredcites →https://doi.org/10.1093/bioinformatics/16.10.944openalex-snapshot

Artemis: sequence visualization and annotation

inferredcites →https://doi.org/10.1093/bioinformatics/btm189openalex-snapshot

A Chado case study: an ontology-based modular schema for representing genome-associated biological information

inferredcites →https://doi.org/10.1093/bioinformatics/btn529openalex-snapshot

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

inferredcites →https://doi.org/10.1093/database/bar030openalex-snapshot

Ensembl BioMarts: a hub for data retrieval across taxonomic space

inferredcites →https://doi.org/10.1093/nar/gkj109openalex-snapshot

BioGRID: a general repository for interaction datasets

inferredcites →https://doi.org/10.1093/nar/gkn803openalex-snapshot

The GOA database in 2009--an integrated Gene Ontology Annotation resource

inferredcites →https://doi.org/10.1093/nar/gkp1018openalex-snapshot

The Gene Ontology in 2010: extensions and refinements

inferredcites →https://doi.org/10.1093/nar/gkp871openalex-snapshot

Ensembl Genomes: Extending Ensembl across the taxonomic space

inferredcites →https://doi.org/10.1093/nar/gkp886openalex-snapshot

Chemical Entities of Biological Interest: an update

inferredcites →https://doi.org/10.1093/nar/gkq1064openalex-snapshot

Ensembl 2011

inferredcites →https://doi.org/10.1093/nar/gkq1116openalex-snapshot

The BioGRID Interaction Database: 2011 update

inferredcites →https://doi.org/10.1126/science.1203357openalex-snapshot

Comparative Functional Genomics of the Fission Yeasts

inferredcites →https://doi.org/10.1186/1471-2164-10-22openalex-snapshot

BioMart – biological queries made easy

inferredcites →https://doi.org/10.1186/gb-2004-6-1-r8openalex-snapshot

Using ontologies to describe mouse phenotypes

inferredcites →https://doi.org/10.1186/gb-2005-6-5-p8openalex-snapshot

inferredcites →https://doi.org/10.1186/gb-2005-6-5-r44openalex-snapshot

The Sequence Ontology: a tool for the unification of genome annotations

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5281/zenodo.4247942zenodo-depositor-declared

inferred← citeshttps://doi.org/10.1002/9780471650126.dob1039openalex-snapshot

PomBase

inferred← citeshttps://doi.org/10.1002/cpz1.151openalex-snapshot

Fission Yeast Schizosaccharomyces pombe : A Unicellular “Micromammal” Model Organism

inferred← citeshttps://doi.org/10.1002/yea.3172openalex-snapshot

Discovery of genes involved in mitosis, cell division, cell wall integrity and chromosome segregation through construction of Schizosaccharomyces pombe deletion strains

inferred← citeshttps://doi.org/10.1002/yea.3912openalex-snapshot

Telomere‐to‐telomere Schizosaccharomyces japonicus genome assembly reveals hitherto unknown genome features

inferred← citeshttps://doi.org/10.1002/yea.3919openalex-snapshot

Schizosaccharomyces versatilis represents a distinct evolutionary lineage of fission yeast

inferred← citeshttps://doi.org/10.1007/978-1-0716-4168-2_23openalex-snapshot

Identifying Drug Sensitivities in Fission Yeast by Assessing Growth Kinetics

inferred← citeshttps://doi.org/10.1007/978-1-4939-0835-6_10openalex-snapshot

GENCODE Pseudogenes

inferred← citeshttps://doi.org/10.1007/978-1-4939-6340-9_4openalex-snapshot

Ribosome Profiling for the Analysis of Translation During Yeast Meiosis

inferred← citeshttps://doi.org/10.1007/978-1-4939-6783-4_1openalex-snapshot

Protein Bioinformatics Databases and Resources

inferred← citeshttps://doi.org/10.1007/978-1-4939-7546-4_18openalex-snapshot

Duplication and Transformation of the Schizosaccharomyces pombe Collection of Deletion Strains

inferred← citeshttps://doi.org/10.1007/978-1-4939-7737-6_4openalex-snapshot

PomBase: The Scientific Resource for Fission Yeast

inferred← citeshttps://doi.org/10.1007/978-1-4939-9822-7_22openalex-snapshot

Reconstitution of the Schizosaccharomyces pombe RNA Exosome

inferred← citeshttps://doi.org/10.1007/978-1-62703-980-2_1openalex-snapshot

The Pre-mRNA Splicing Reaction

inferred← citeshttps://doi.org/10.1007/s00203-025-04485-yopenalex-snapshot

E2 ubiquitin-conjugating enzyme Ubc11 regulates Rst2 protein stability in the fission yeast Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1007/s00294-014-0465-7openalex-snapshot

Nonsense codon suppression in fission yeast due to mutations of tRNASer.11 and translation release factor Sup35 (eRF3)

inferred← citeshttps://doi.org/10.1007/s00294-016-0573-7openalex-snapshot

The repeatability of genome-wide mutation rate and spectrum estimates

inferred← citeshttps://doi.org/10.1007/s00294-016-0657-4openalex-snapshot

Big data mining powers fungal research: recent advances in fission yeast systems biology approaches

inferred← citeshttps://doi.org/10.1007/s12038-014-9435-yopenalex-snapshot

Conservation of PHO pathway in ascomycetes and the role of Pho84

inferred← citeshttps://doi.org/10.1007/s12192-015-0662-4openalex-snapshot

Involvement of small heat shock proteins, trehalose, and lipids in the thermal stress management in Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1007/s13258-016-0413-7openalex-snapshot

Relationship between spatial organization and biological function, analyzed using gene ontology and chromosome conformation capture of human and fission yeast genomes

inferred← citeshttps://doi.org/10.1016/b978-0-12-822563-9.00109-8openalex-snapshot

Schizosaccharomyces, Comparative Genomics of the Fission Yeasts

inferred← citeshttps://doi.org/10.1016/j.ajhg.2017.04.010openalex-snapshot

MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome

inferred← citeshttps://doi.org/10.1016/j.bbadis.2015.04.022openalex-snapshot

The neuronal ceroid lipofuscinoses: Opportunities from model systems

inferred← citeshttps://doi.org/10.1016/j.bbadis.2019.165559openalex-snapshot

Cellular models of Batten disease

inferred← citeshttps://doi.org/10.1016/j.bbagrm.2016.06.009openalex-snapshot

The fission yeast CENP-B protein Abp1 prevents pervasive transcription of repetitive DNA elements

inferred← citeshttps://doi.org/10.1016/j.bbalip.2018.06.019openalex-snapshot

Schizosaccharomyces pombe cardiolipin synthase is part of a mitochondrial fusion protein regulated by intron retention

inferred← citeshttps://doi.org/10.1016/j.bbalip.2021.158990openalex-snapshot

Sec14 family of lipid transfer proteins in yeasts

inferred← citeshttps://doi.org/10.1016/j.bbrc.2014.01.018openalex-snapshot

The ribosomal protein rpl26 promoter is required for its 3′ sense terminus ncRNA transcription in Schizosaccharomyces pombe, implicating a new transcriptional mechanism for ncRNAs

inferred← citeshttps://doi.org/10.1016/j.bbrc.2015.10.165openalex-snapshot

Identification of Rbd2 as a candidate protease for sterol regulatory element binding protein (SREBP) cleavage in fission yeast

inferred← citeshttps://doi.org/10.1016/j.bbrc.2024.150895openalex-snapshot

Characterization of Ksg1 protein kinase-dependent phosphoproteome in the fission yeast S. pombe

inferred← citeshttps://doi.org/10.1016/j.cell.2012.09.019openalex-snapshot

Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

inferred← citeshttps://doi.org/10.1016/j.cell.2016.11.034openalex-snapshot

CDK Substrate Phosphorylation and Ordering the Cell Cycle

inferred← citeshttps://doi.org/10.1016/j.cell.2018.05.041openalex-snapshot

Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex

inferred← citeshttps://doi.org/10.1016/j.celrep.2018.06.036openalex-snapshot

Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1016/j.celrep.2020.01.094openalex-snapshot

Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation

inferred← citeshttps://doi.org/10.1016/j.celrep.2020.108526openalex-snapshot

Opposite Surfaces of the Cdc15 F-BAR Domain Create a Membrane Platform That Coordinates Cytoskeletal and Signaling Components for Cytokinesis

inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114725openalex-snapshot

Cross-regulations of two connected domains form a mechanical circuit for steady force transmission during clathrin-mediated endocytosis

inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114730openalex-snapshot

Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications

inferred← citeshttps://doi.org/10.1016/j.cels.2018.05.015openalex-snapshot

Linear Regression Links Transcriptomic Data and Cellular Raman Spectra

inferred← citeshttps://doi.org/10.1016/j.csbj.2015.02.003openalex-snapshot

Biochemical functional predictions for protein structures of unknown or uncertain function

inferred← citeshttps://doi.org/10.1016/j.csbj.2019.05.008openalex-snapshot

An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features

inferred← citeshttps://doi.org/10.1016/j.cub.2017.03.013openalex-snapshot

Fission Yeast Apc15 Stabilizes MCC-Cdc20-APC/C Complexes, Ensuring Efficient Cdc20 Ubiquitination and Checkpoint Arrest

inferred← citeshttps://doi.org/10.1016/j.dnarep.2013.04.001openalex-snapshot

A proteome-wide visual screen identifies fission yeast proteins localizing to DNA double-strand breaks

inferred← citeshttps://doi.org/10.1016/j.gene.2015.07.066openalex-snapshot

KAEA (SUDPRO), a member of the ubiquitous KEOPS/EKC protein complex, regulates the arginine catabolic pathway and the expression of several other genes in Aspergillus nidulans

inferred← citeshttps://doi.org/10.1016/j.isci.2018.06.011openalex-snapshot

S-Adenosylmethionine Synthetase Is Required for Cell Growth, Maintenance of G0 Phase, and Termination of Quiescence in Fission Yeast

inferred← citeshttps://doi.org/10.1016/j.isci.2026.116971openalex-snapshot

Gene clustering drives the transcriptional coherence of disparate biological processes in eukaryotes

inferred← citeshttps://doi.org/10.1016/j.jbc.2024.105754openalex-snapshot

A KDELR-mediated ER-retrieval system modulates mitochondrial functions via the unfolded protein response in fission yeast

inferred← citeshttps://doi.org/10.1016/j.jmb.2024.168641openalex-snapshot

Structure-guided Evolutionary Analysis of Interactome Network Rewiring at Single Residue Resolution in Yeasts

inferred← citeshttps://doi.org/10.1016/j.mib.2015.07.011openalex-snapshot

Comparative biology of cell division in the fission yeast clade

inferred← citeshttps://doi.org/10.1016/j.molcel.2012.05.028openalex-snapshot

Hierarchical Modularity and the Evolution of Genetic Interactomes across Species

inferred← citeshttps://doi.org/10.1016/j.postharvbio.2026.114683openalex-snapshot

Preventive control of postharvest gray mold in tomato by tautomycetin-producing Streptomyces sp. KRA20-350

inferred← citeshttps://doi.org/10.1016/j.semcdb.2016.07.033openalex-snapshot

Substrates and physiological functions of secretase rhomboid proteases

inferred← citeshttps://doi.org/10.1016/j.tcb.2021.03.013openalex-snapshot

The state of F-BAR domains as membrane-bound oligomeric platforms

inferred← citeshttps://doi.org/10.1016/j.tplants.2019.06.004openalex-snapshot

Phosphorus Transport in Mycorrhiza: How Far Are We?

inferred← citeshttps://doi.org/10.1038/hdy.2013.67openalex-snapshot

Evolution of uni- and bifactorial sexual compatibility systems in fungi

inferred← citeshttps://doi.org/10.1038/ncomms4947openalex-snapshot

A global non-coding RNA system modulates fission yeast protein levels in response to stress

inferred← citeshttps://doi.org/10.1038/ncomms6876openalex-snapshot

Three-dimensional eukaryotic genomic organization is strongly correlated with codon usage expression and function

inferred← citeshttps://doi.org/10.1038/ncomms8815openalex-snapshot

Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation

inferred← citeshttps://doi.org/10.1038/ncomms9827openalex-snapshot

Targeting of SUMO substrates to a Cdc48–Ufd1–Npl4 segregase and STUbL pathway in fission yeast

inferred← citeshttps://doi.org/10.1038/nsmb.2843openalex-snapshot

The translational landscape of fission-yeast meiosis and sporulation

inferred← citeshttps://doi.org/10.1038/nsmb.2893openalex-snapshot

The RNA exosome promotes transcription termination of backtracked RNA polymerase II

inferred← citeshttps://doi.org/10.1038/s41467-018-06546-xopenalex-snapshot

Common mechanism of transcription termination at coding and noncoding RNA genes in fission yeast

inferred← citeshttps://doi.org/10.1038/s41467-020-15060-yopenalex-snapshot

Time-lapse single-cell transcriptomics reveals modulation of histone H3 for dormancy breaking in fission yeast

inferred← citeshttps://doi.org/10.1038/s41598-017-16291-8openalex-snapshot

RNA metabolism is the primary target of formamide in vivo

inferred← citeshttps://doi.org/10.1038/s41598-022-06529-5openalex-snapshot

Prediction of serine phosphorylation sites mapping on Schizosaccharomyces Pombe by fusing three encoding schemes with the random forest classifier

inferred← citeshttps://doi.org/10.1038/srep16726openalex-snapshot

Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations

inferred← citeshttps://doi.org/10.1039/c4mb00346bopenalex-snapshot

Unexpected similarities between the Schizosaccharomyces and human blood metabolomes, and novel human metabolites

inferred← citeshttps://doi.org/10.1042/bst20130224openalex-snapshot

Systematic genetic analysis of transcription factors to map the fission yeast transcription-regulatory network

inferred← citeshttps://doi.org/10.1073/pnas.1525620113openalex-snapshot

Identification of S-phase DNA damage-response targets in fission yeast reveals conservation of damage-response networks

inferred← citeshttps://doi.org/10.1073/pnas.1713991115openalex-snapshot

General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4

inferred← citeshttps://doi.org/10.1073/pnas.2208004119openalex-snapshot

Cohesin ATPase activities regulate DNA binding and coiled-coil configuration

inferred← citeshttps://doi.org/10.1074/jbc.m117.802025openalex-snapshot

Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of sterol regulatory element-binding protein in fission yeast

inferred← citeshttps://doi.org/10.1074/jbc.ra118.004844openalex-snapshot

Abrogation of glucosidase I–mediated glycoprotein deglucosylation results in a sick phenotype in fission yeasts: Model for the human MOGS-CDG disorder

inferred← citeshttps://doi.org/10.1074/jbc.ra118.005415openalex-snapshot

XPG-related nucleases are hierarchically recruited for double-stranded rDNA break resection

inferred← citeshttps://doi.org/10.1074/mcp.m112.023754openalex-snapshot

Extensive Mass Spectrometry-based Analysis of the Fission Yeast Proteome

inferred← citeshttps://doi.org/10.1074/mcp.m115.050039openalex-snapshot

A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival*

inferred← citeshttps://doi.org/10.1080/09168451.2016.1246171openalex-snapshot

cAMP-dependent protein kinase involves calcium tolerance through the regulation of Prz1 inSchizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1080/09168451.2017.1415126openalex-snapshot

Overexpression of the transcription factor Rst2 inSchizosaccharomyces pombeindicates growth defect, mitotic defects, and microtubule disorder

inferred← citeshttps://doi.org/10.1080/09168451.2020.1763157openalex-snapshot

Glucose limitation andpka1deletion rescue aberrant mitotic spindle formation induced by Mal3 overexpression inSchizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1080/10985549.2023.2270406openalex-snapshot

Functional Consequences of Shifting Transcript Boundaries in Glucose Starvation

inferred← citeshttps://doi.org/10.1080/15384101.2016.1235100openalex-snapshot

CSL protein regulates transcription of genes required to prevent catastrophic mitosis in fission yeast

inferred← citeshttps://doi.org/10.1080/15476286.2015.1022704openalex-snapshot

Genome-wide analysis of core promoter structures inSchizosaccharomyces pombewith DeepCAGE

inferred← citeshttps://doi.org/10.1089/cmb.2018.0113openalex-snapshot

MCAT: Motif Combining and Association Tool

inferred← citeshttps://doi.org/10.1091/mbc.e13-06-0301openalex-snapshot

Cooperation between Rho-GEF Gef2 and its binding partner Nod1 in the regulation of fission yeast cytokinesis

inferred← citeshttps://doi.org/10.1091/mbc.e13-10-0602openalex-snapshot

What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins

inferred← citeshttps://doi.org/10.1091/mbc.e14-10-1451openalex-snapshot

The Cdc15 and Imp2 SH3 domains cooperatively scaffold a network of proteins that redundantly ensure efficient cell division in fission yeast

inferred← citeshttps://doi.org/10.1091/mbc.e20-09-0588openalex-snapshot

Time-varying mobility and turnover of actomyosin ring components during cytokinesis inSchizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1091/mbc.e21-11-0560openalex-snapshot

Fission yeast paxillin contains two Cdc15 binding motifs for robust recruitment to the cytokinetic ring

inferred← citeshttps://doi.org/10.1091/mbc.e23-06-0233openalex-snapshot

Membrane binding of endocytic myosin-1s is inhibited by a class of ankyrin repeat proteins

inferred← citeshttps://doi.org/10.1093/bib/bbx035openalex-snapshot

The anatomy of phenotype ontologies: principles, properties and applications

inferred← citeshttps://doi.org/10.1093/bioinformatics/btt266openalex-snapshot

FYPO: the fission yeast phenotype ontology

inferred← citeshttps://doi.org/10.1093/bioinformatics/btu103openalex-snapshot

Canto: an online tool for community literature curation

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Inferring orthologous gene regulatory networks using interspecies data fusion

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FSRD: fungal stress response database

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A guide to best practices for Gene Ontology (GO) manual annotation

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YeasTSS: an integrative web database of yeast transcription start sites

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OUP accepted manuscript

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AnABlast: a newin silicostrategy for the genome-wide search of novel genes and fossil regions

inferred← citeshttps://doi.org/10.1093/dnares/dsw019openalex-snapshot

Selection for reduced translation costs at the intronic 5′ end in fungi

inferred← citeshttps://doi.org/10.1093/femsyr/fow061openalex-snapshot

Identification of nuclear genes affecting 2-Deoxyglucose resistance inSchizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1093/g3journal/jkac194openalex-snapshot

Genetic-interaction screens uncover novel biological roles and regulators of transcription factors in fission yeast

inferred← citeshttps://doi.org/10.1093/g3journal/jkaf111openalex-snapshot

Site-to-site mutational dissection of fission yeast cohesin reveals its dynamics

inferred← citeshttps://doi.org/10.1093/g3journal/jkag176openalex-snapshot

Direct link between convergent evolution at sequence level and phenotypic level of septal pore cap in Agaricomycotina

inferred← citeshttps://doi.org/10.1093/gbe/evt074openalex-snapshot

All or Nothing: Protein Complexes Flip Essentiality between Distantly Related Eukaryotes

inferred← citeshttps://doi.org/10.1093/gbe/evu067openalex-snapshot

Comparative Genomics of Taphrina Fungi Causing Varying Degrees of Tumorous Deformity in Plants

inferred← citeshttps://doi.org/10.1093/genetics/iyab023openalex-snapshot

The Descent of Databases

inferred← citeshttps://doi.org/10.1093/genetics/iyag064openalex-snapshot

Genetic and environmental determinants of multicellular-like phenotypes in fission yeast

inferred← citeshttps://doi.org/10.1093/humrep/deaf116openalex-snapshot

Paracetamol (N-acetyl-para-aminophenol) disrupts early embryogenesis by cell cycle inhibition

inferred← citeshttps://doi.org/10.1093/molbev/msz052openalex-snapshot

Killer Meiotic Drive and Dynamic Evolution of the wtf Gene Family

inferred← citeshttps://doi.org/10.1093/nar/gkab027openalex-snapshot

Repression of a large number of genes requires interplay between homologous recombination and HIRA

inferred← citeshttps://doi.org/10.1093/nar/gkab654openalex-snapshot

Co-transcriptional RNA cleavage by Drosha homolog Pac1 triggers transcription termination in fission yeast

inferred← citeshttps://doi.org/10.1093/nar/gkac175openalex-snapshot

Facultative heterochromatin formation in rDNA is essential for cell survival during nutritional starvation

inferred← citeshttps://doi.org/10.1093/nar/gkac546openalex-snapshot

A multiplexed, three-dimensional pooling and next-generation sequencing strategy for creating barcoded mutant arrays: construction of a Schizosaccharomyces pombe transposon insertion library

inferred← citeshttps://doi.org/10.1093/nar/gkr1032openalex-snapshot

GeneDB--an annotation database for pathogens

inferred← citeshttps://doi.org/10.1093/nar/gks1158openalex-snapshot

The BioGRID interaction database: 2013 update

inferred← citeshttps://doi.org/10.1093/nar/gks1185openalex-snapshot

Transposon integration enhances expression of stress response genes

inferred← citeshttps://doi.org/10.1093/nar/gkt1046openalex-snapshot

TheCandidaGenome Database: The new homology information page highlights protein similarity and phylogeny

inferred← citeshttps://doi.org/10.1093/nar/gkt979openalex-snapshot

Ensembl Genomes 2013: scaling up access to genome-wide data

inferred← citeshttps://doi.org/10.1093/nar/gku1040openalex-snapshot

PomBase 2015: updates to the fission yeast database

inferred← citeshttps://doi.org/10.1093/nar/gku1092openalex-snapshot

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

inferred← citeshttps://doi.org/10.1093/nar/gku1165openalex-snapshot

The Pathogen-Host Interactions database (PHI-base): additions and future developments

inferred← citeshttps://doi.org/10.1093/nar/gku1204openalex-snapshot

The BioGRID interaction database: 2015 update

inferred← citeshttps://doi.org/10.1093/nar/gku434openalex-snapshot

MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network

inferred← citeshttps://doi.org/10.1093/nar/gkv316openalex-snapshot

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI

inferred← citeshttps://doi.org/10.1093/nar/gkv763openalex-snapshot

Widespread alternative and aberrant splicing revealed by lariat sequencing

inferred← citeshttps://doi.org/10.1093/nar/gkw1069openalex-snapshot

The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms

inferred← citeshttps://doi.org/10.1093/nar/gkx1104openalex-snapshot

iPTMnet: an integrated resource for protein post-translational modification network discovery

inferred← citeshttps://doi.org/10.1093/nar/gkx205openalex-snapshot

Tracking the evolution of 3D gene organization demonstrates its connection to phenotypic divergence

inferred← citeshttps://doi.org/10.1093/nar/gky605openalex-snapshot

Fission yeast telosomes: non-canonical histone-containing chromatin structures dependent on shelterin and RNA

inferred← citeshttps://doi.org/10.1093/nar/gky961openalex-snapshot

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information

inferred← citeshttps://doi.org/10.1096/fasebj.28.1_supplement.939.6openalex-snapshot

Identification of critical residues in spliceosomal protein Dib1 (939.6)

inferred← citeshttps://doi.org/10.1096/fj.202302563rropenalex-snapshot

Proteins and noncoding RNAs that promote homologous chromosome recognition and pairing in fission yeast meiosis undergo condensate formation in vitro

inferred← citeshttps://doi.org/10.1098/rsfs.2012.0055openalex-snapshot

An integrative, translational approach to understanding rare and orphan genetically based diseases

inferred← citeshttps://doi.org/10.1098/rsob.130053openalex-snapshot

A genome-wide resource of cell cycle and cell shape genes of fission yeast

inferred← citeshttps://doi.org/10.1098/rsob.140063openalex-snapshot

Optimization of the analogue-sensitive Cdc2/Cdk1 mutant byin vivoselection eliminates physiological limitations to its use in cell cycle analysis

inferred← citeshttps://doi.org/10.1098/rsob.150054openalex-snapshot

Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1098/rsob.200052openalex-snapshot

Bioinformatical dissection of fission yeast DNA replication origins

inferred← citeshttps://doi.org/10.1098/rsob.240101openalex-snapshot

Pck2 association with the plasma membrane and efficient response of the cell integrity pathway require regulation of PI4P homeostasis by exomer

inferred← citeshttps://doi.org/10.1101/092536openalex-snapshot

New single-molecule imaging of the eisosome BAR domain protein Pil1p reveals filament-like dynamics

inferred← citeshttps://doi.org/10.1101/116749openalex-snapshot

Reconstructing regulatory pathways by systematically mapping protein localization interdependency networks

inferred← citeshttps://doi.org/10.1101/2020.03.18.979971openalex-snapshot

OmicsDB::Pathogens - A database for exploring functional networks of plant pathogens

inferred← citeshttps://doi.org/10.1101/2020.11.09.374702openalex-snapshot

Essential role of non-vesicular lipid transport in microtubule-controlled cell polarisation

inferred← citeshttps://doi.org/10.1101/2021.08.31.458362openalex-snapshot

Genome-wide identification of sexual-reproduction genes in fission yeast via transposon-insertion sequencing

inferred← citeshttps://doi.org/10.1101/2022.05.23.493069openalex-snapshot

Fission yeast Smi1p participates in the synthesis of the primary septum by regulating β-1,3-glucan synthase Bgs1p function

inferred← citeshttps://doi.org/10.1101/2023.09.04.556188openalex-snapshot

Schizosaccharomyces versatilis represents a distinct evolutionary lineage

inferred← citeshttps://doi.org/10.1101/2023.12.24.573283openalex-snapshot

The mechanism of homologous chromosome recognition and pairing facilitated by chromosome-tethered protein-RNA condensates

inferred← citeshttps://doi.org/10.1101/2024.04.25.591159openalex-snapshot

Multiple direct and indirect roles of Paf1C in elongation, splicing, and histone post-translational modifications

inferred← citeshttps://doi.org/10.1101/2025.01.16.633409openalex-snapshot

Genetically encoded mechano-sensors with versatile readouts and compact size

inferred← citeshttps://doi.org/10.1101/2025.10.10.681675openalex-snapshot

Rax1/2 promote memory of growth by early Ras1 activation to maintain polarity across generations

inferred← citeshttps://doi.org/10.1101/241273openalex-snapshot

Comparative RNA-seq based transcriptomic analysis of Aspergillus nidulans recombinant strains overproducing heterologous glycoside hydrolases

inferred← citeshttps://doi.org/10.1101/289751openalex-snapshot

Intronic non-coding RNAs within ribosomal protein coding genes can regulate biogenesis of yeast ribosome

inferred← citeshttps://doi.org/10.1101/330365openalex-snapshot

Gene function contributes to gene expression levels in S. cerevisiae

inferred← citeshttps://doi.org/10.1101/522524openalex-snapshot

R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

inferred← citeshttps://doi.org/10.1101/575241openalex-snapshot

The ubiquitin-conjugating enzyme Ubc13-Mms2 cooperates with a family of FYVE-type-RING ubiquitin protein ligases in K63-polyubiquitylation at internal membranes

inferred← citeshttps://doi.org/10.1101/844621openalex-snapshot

Translational readthrough goes unseen by natural selection

inferred← citeshttps://doi.org/10.1101/gad.184697.111openalex-snapshot

DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase

inferred← citeshttps://doi.org/10.1101/gad.310136.117openalex-snapshot

Polymerase pausing induced by sequence-specific RNA-binding protein drives heterochromatin assembly

inferred← citeshttps://doi.org/10.1101/gad.311712.118openalex-snapshot

RNAi drives nonreciprocal translocations at eroding chromosome ends to establish telomere-free linear chromosomes

inferred← citeshttps://doi.org/10.1101/gr.179259.114openalex-snapshot

Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters

inferred← citeshttps://doi.org/10.1101/gr.208041.116openalex-snapshot

The dynamic landscape of fission yeast meiosis alternative-splice isoforms

inferred← citeshttps://doi.org/10.1101/pdb.prot088880openalex-snapshot

Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions

inferred← citeshttps://doi.org/10.1101/pdb.top080754openalex-snapshot

BioGRID: A Resource for Studying Biological Interactions in Yeast

inferred← citeshttps://doi.org/10.1109/coginfocom.2015.7390586openalex-snapshot

Distributed processing of biological interactions using Hadoop

inferred← citeshttps://doi.org/10.1111/gtc.12151openalex-snapshot

Mudi, a web tool for identifying mutations by bioinformatics analysis of whole‐genome sequence

inferred← citeshttps://doi.org/10.1111/gtc.12229openalex-snapshot

Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation

inferred← citeshttps://doi.org/10.1111/gtc.12346openalex-snapshot

Calcium modulation of doxorubicin cytotoxicity in yeast and human cells

inferred← citeshttps://doi.org/10.1111/j.1365-2958.2012.08125.xopenalex-snapshot

Natural antisense transcripts in fungi

inferred← citeshttps://doi.org/10.1111/mmi.12370openalex-snapshot

The S chizosaccharomyces pombe fusion gene hal3 encodes three distinct activities

inferred← citeshttps://doi.org/10.1111/mmi.12421openalex-snapshot

Interplay of the fungal sumoylation network for control of multicellular development

inferred← citeshttps://doi.org/10.1111/mmi.14678openalex-snapshot

Role of mitochondrial complex III/IV in the activation of transcription factor Rst2 in Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1126/sciadv.aat5685openalex-snapshot

Genetic regulation of mitotic competence in G 0 quiescent cells

inferred← citeshttps://doi.org/10.1126/scisignal.2003350openalex-snapshot

Cross-Species Protein Interactome Mapping Reveals Species-Specific Wiring of Stress Response Pathways

inferred← citeshttps://doi.org/10.1128/9781555819217.ch43openalex-snapshot

The Long Terminal Repeat Retrotransposons Tf1 and Tf2 of Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1128/mbio.00055-13openalex-snapshot

Genome Sequencing of the Plant Pathogen Taphrina deformans , the Causal Agent of Peach Leaf Curl

inferred← citeshttps://doi.org/10.1128/mbio.01351-24openalex-snapshot

Edeine B 1 produced by Brevibacillus brevis reduces the virulence of a plant pathogenic fungus by inhibiting mitochondrial respiration

inferred← citeshttps://doi.org/10.1128/mbio.02048-18openalex-snapshot

Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida albicans

inferred← citeshttps://doi.org/10.1128/mcb.00193-14openalex-snapshot

H2A.Z-Dependent Regulation of Cohesin Dynamics on Chromosome Arms

inferred← citeshttps://doi.org/10.1128/mcb.00349-13openalex-snapshot

A Stress-Activated, p38 Mitogen-Activated Protein Kinase–ATF/CREB Pathway Regulates Posttranscriptional, Sequence-Dependent Decay of Target RNAs

inferred← citeshttps://doi.org/10.1128/mcb.00393-17openalex-snapshot

A Heterochromatin Domain Forms Gradually at a New Telomere and Is Dynamic at Stable Telomeres

inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0040-2014openalex-snapshot

The Long Terminal Repeat Retrotransposons Tf1 and Tf2 of Schizosaccharomyces pombe

inferred← citeshttps://doi.org/10.1128/msystems.00123-26openalex-snapshot

Glutathione acts as an exometabolite that promotes growth recovery in fission yeast with defects in amino acid metabolism and cell polarity

inferred← citeshttps://doi.org/10.1145/3064650openalex-snapshot

Computational Prediction of Protein Complexes from Protein Interaction Networks

inferred← citeshttps://doi.org/10.1145/3064650.3064651openalex-snapshot

Preface

inferred← citeshttps://doi.org/10.1145/3064650.3064652openalex-snapshot

Introduction to Protein Complex Prediction

inferred← citeshttps://doi.org/10.1145/3064650.3064653openalex-snapshot

Constructing Reliable Protein-Protein Interaction (PPI) Networks

inferred← citeshttps://doi.org/10.1145/3064650.3064654openalex-snapshot

Computational Methods for Protein Complex Prediction from PPI Networks

inferred← citeshttps://doi.org/10.1145/3064650.3064655openalex-snapshot

Evaluating Protein Complex Prediction Methods

inferred← citeshttps://doi.org/10.1145/3064650.3064656openalex-snapshot

Open Challenges in Protein Complex Prediction

inferred← citeshttps://doi.org/10.1145/3064650.3064657openalex-snapshot

Identifying Dynamic Protein Complexes

inferred← citeshttps://doi.org/10.1145/3064650.3064658openalex-snapshot

Identifying Evolutionarily Conserved Protein Complexes

inferred← citeshttps://doi.org/10.1145/3064650.3064659openalex-snapshot

Protein Complex Prediction in the Era of Systems Biology

inferred← citeshttps://doi.org/10.1145/3064650.3064660openalex-snapshot

Conclusion

inferred← citeshttps://doi.org/10.1145/3064650.3064661openalex-snapshot

References

inferred← citeshttps://doi.org/10.1155/2013/594528openalex-snapshot

GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces

inferred← citeshttps://doi.org/10.1186/1471-2105-15-155openalex-snapshot

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

inferred← citeshttps://doi.org/10.1186/1471-2164-14-402openalex-snapshot

A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes

inferred← citeshttps://doi.org/10.1186/gb-2013-14-9-214openalex-snapshot

Toward knowledge support for analysis and interpretation of complex traits

inferred← citeshttps://doi.org/10.1186/preaccept-1274422079125848openalex-snapshot

A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast

inferred← citeshttps://doi.org/10.1186/s12859-017-1497-zopenalex-snapshot

Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking

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