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“ Ca . Nitrosocosmicus” members are the dominant archaea associated with pepper ( Capsicum annuum L.) and ginseng ( Panax ginseng C.A. Mey.) plants’ rhizospheres
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/9781119246329.ch10openalex-snapshot
Root Exudates: Composition and Impact on Plant–Microbe Interaction
inferredcites →https://doi.org/10.1002/jpln.19861490408openalex-snapshot
Root‐induced changes in the rhizosphere: Importance for the mineral nutrition of plants
inferredcites →https://doi.org/10.1002/jpln.201000360openalex-snapshot
Methods of collection of plant root exudates in relation to plant metabolism and purpose: A review
inferredcites →https://doi.org/10.1007/s00248-014-0465-7openalex-snapshot
Altitudinal Distribution Patterns of Soil Bacterial and Archaeal Communities Along Mt. Shegyla on the Tibetan Plateau
inferredcites →https://doi.org/10.1007/s002480000087openalex-snapshot
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
inferredcites →https://doi.org/10.1007/s00253-018-9556-6openalex-snapshot
Plant health: feedback effect of root exudates-rhizobiome interactions
inferredcites →https://doi.org/10.1007/s00299-019-02372-7openalex-snapshot
Hydrogen peroxide is involved in methane-induced tomato lateral root formation
inferredcites →https://doi.org/10.1007/s00374-019-01405-3openalex-snapshot
Sorgoleone release from sorghum roots shapes the composition of nitrifying populations, total bacteria, and archaea and determines the level of nitrification
inferredcites →https://doi.org/10.1007/s11104-012-1363-8openalex-snapshot
Estimation of rhizodeposition at field scale: upscaling of a 14C labeling study
inferredcites →https://doi.org/10.1016/b978-0-12-384905-2.00014-5openalex-snapshot
Rhizosphere Chemistry in Relation to Plant Nutrition
inferredcites →https://doi.org/10.1016/bs.abr.2016.10.007openalex-snapshot
Plant Communication With Associated Microbiota in the Spermosphere, Rhizosphere and Phyllosphere
inferredcites →https://doi.org/10.1016/j.ab.2006.01.051openalex-snapshot
SPUD: A quantitative PCR assay for the detection of inhibitors in nucleic acid preparations
inferredcites →https://doi.org/10.1016/j.abb.2011.12.008openalex-snapshot
Non-heme manganese catalase – The ‘other’ catalase
inferredcites →https://doi.org/10.1016/j.apsoil.2020.103540openalex-snapshot
The rhizosphere and cropping system, but not arbuscular mycorrhizae, affect ammonia oxidizing archaea and bacteria abundances in two agricultural soils
inferredcites →https://doi.org/10.1016/j.chom.2015.01.011openalex-snapshot
Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
inferredcites →https://doi.org/10.1016/j.copbio.2018.01.014openalex-snapshot
Nitrification in agricultural soils: impact, actors and mitigation
inferredcites →https://doi.org/10.1016/j.copbio.2018.10.001openalex-snapshot
Lignin polymerization: how do plants manage the chemistry so well?
inferredcites →https://doi.org/10.1016/j.jff.2017.04.020openalex-snapshot
Glyceollins: Soybean phytoalexins that exhibit a wide range of health-promoting effects
inferredcites →https://doi.org/10.1016/j.molcel.2007.03.016openalex-snapshot
Hydrogen Peroxide Sensing and Signaling
inferredcites →https://doi.org/10.1016/j.soilbio.2010.11.022openalex-snapshot
Microbial processes and community composition in the rhizosphere of European beech – The influence of plant C exudates
inferredcites →https://doi.org/10.1016/j.soilbio.2012.08.003openalex-snapshot
Different roles of rhizosphere effect and long-term fertilization in the activity and community structure of ammonia oxidizers in a calcareous fluvo-aquic soil
inferredcites →https://doi.org/10.1016/j.tim.2017.07.004openalex-snapshot
Archaea Are Interactive Components of Complex Microbiomes
inferredcites →https://doi.org/10.1016/j.tplants.2004.09.002openalex-snapshot
Performing the paradoxical: how plant peroxidases modify the cell wall
inferredcites →https://doi.org/10.1016/j.tplants.2012.04.001openalex-snapshot
The rhizosphere microbiome and plant health
inferredcites →https://doi.org/10.1016/j.tplants.2017.09.003openalex-snapshot
Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
inferredcites →https://doi.org/10.1016/s0168-6496(01)00173-8openalex-snapshot
Catalase and superoxide dismutase activity in ammonia-oxidising bacteria
inferredcites →https://doi.org/10.1016/s0959-437x(98)80032-4openalex-snapshot
Everything in moderation: Archaea as ‘non-extremophiles’
inferredcites →https://doi.org/10.1021/acs.est.2c00005openalex-snapshot
Diel Fluctuation of Extracellular Reactive Oxygen Species Production in the Rhizosphere of Rice
inferredcites →https://doi.org/10.1038/ismej.2008.103openalex-snapshot
Selective progressive response of soil microbial community to wild oat roots
inferredcites →https://doi.org/10.1038/ismej.2008.80openalex-snapshot
Plant host habitat and root exudates shape soil bacterial community structure
inferredcites →https://doi.org/10.1038/ismej.2016.192openalex-snapshot
Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
inferredcites →https://doi.org/10.1038/ismej.2016.205openalex-snapshot
Archaea and bacteria mediate the effects of native species root loss on fungi during plant invasion
inferredcites →https://doi.org/10.1038/nature04983openalex-snapshot
Archaea predominate among ammonia-oxidizing prokaryotes in soils
inferredcites →https://doi.org/10.1038/nature11237openalex-snapshot
Defining the core Arabidopsis thaliana root microbiome
inferredcites →https://doi.org/10.1038/nature11336openalex-snapshot
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
inferredcites →https://doi.org/10.1038/ncomms5950openalex-snapshot
Niche and host-associated functional signatures of the root surface microbiome
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nplants.2017.74openalex-snapshot
Nitrogen transformations in modern agriculture and the role of biological nitrification inhibition
inferredcites →https://doi.org/10.1038/s41396-019-0460-6openalex-snapshot
Indications for enzymatic denitrification to N2O at low pH in an ammonia-oxidizing archaeon
inferredcites →https://doi.org/10.1038/s41396-019-0538-1openalex-snapshot
Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants
inferredcites →https://doi.org/10.1038/s41396-021-01037-2openalex-snapshot
Verrucomicrobial methanotrophs grow on diverse C3 compounds and use a homolog of particulate methane monooxygenase to oxidize acetone
inferredcites →https://doi.org/10.1038/s41396-021-01064-zopenalex-snapshot
Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities
inferredcites →https://doi.org/10.1038/s41467-018-03861-1openalex-snapshot
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
inferredcites →https://doi.org/10.1038/s41467-018-05122-7openalex-snapshot
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
inferredcites →https://doi.org/10.1038/srep42335openalex-snapshot
Alleviation of drought stress by mycorrhizas is related to increased root H2O2 efflux in trifoliate orange
inferredcites →https://doi.org/10.1046/j.1462-2920.2000.00131.xopenalex-snapshot
Crenarchaeota colonize terrestrial plant roots
inferredcites →https://doi.org/10.1046/j.1462-2920.2001.00194.xopenalex-snapshot
Crenarchaeota colonize terrestrial plant roots
inferredcites →https://doi.org/10.1046/j.1469-8137.2003.00804.xopenalex-snapshot
Nitric oxide signalling in plants
inferredcites →https://doi.org/10.1073/pnas.0401707101openalex-snapshot
Hydrogen peroxide mediates plant root cell response to nutrient deprivation
inferredcites →https://doi.org/10.1073/pnas.1302837110openalex-snapshot
Diversity and heritability of the maize rhizosphere microbiome under field conditions
inferredcites →https://doi.org/10.1073/pnas.1414592112openalex-snapshot
Structure, variation, and assembly of the root-associated microbiomes of rice
inferredcites →https://doi.org/10.1073/pnas.1605501113openalex-snapshot
Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea
inferredcites →https://doi.org/10.1073/pnas.1912130117openalex-snapshot
Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling
inferredcites →https://doi.org/10.1089/ars.2006.8.243openalex-snapshot
Hydrogen Peroxide: A Signaling Messenger
inferredcites →https://doi.org/10.1089/ars.2008.2046openalex-snapshot
Evolution of Catalases from Bacteria to Humans
inferredcites →https://doi.org/10.1093/femsec/fiw057openalex-snapshot
Isolation of ‘CandidatusNitrosocosmicus franklandus’, a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration
inferredcites →https://doi.org/10.1093/femsec/fiw091openalex-snapshot
Plant nitrogen-use strategy as a driver of rhizosphere archaeal and bacterial ammonia oxidiser abundance
inferredcites →https://doi.org/10.1093/jxb/erh189openalex-snapshot
Rapid accumulation of hydrogen peroxide in cucumber roots due to exposure to low temperature appears to mediate decreases in water transport
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/oxfordjournals.jbchem.a131664openalex-snapshot
Oxidative Pathway of Choline to Betaine in the Soluble Fraction Prepared from Arthrobacter globiformis
inferredcites →https://doi.org/10.1094/pbiomes-01-20-0017-ropenalex-snapshot
Tomato-Associated Archaea Show a Cultivar-Specific Rhizosphere Effect but an Unspecific Transmission by Seeds
inferredcites →https://doi.org/10.1099/ijsem.0.005056openalex-snapshot
Valid publication of the names of forty-two phyla of prokaryotes
inferredcites →https://doi.org/10.1104/pp.104.044784openalex-snapshot
Production of Reactive Oxygen Intermediates (O2 ˙ −, H2O2, and ˙ OH) by Maize Roots and Their Role in Wall Loosening and Elongation Growth
inferredcites →https://doi.org/10.1104/pp.82.4.1169openalex-snapshot
Some Enzymes of Hydrogen Peroxide Metabolism in Leaves and Root Nodules of Medicago sativa
inferredcites →https://doi.org/10.1111/1462-2920.12925openalex-snapshot
The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application
inferredcites →https://doi.org/10.1111/1574-6968.12164openalex-snapshot
Responses of the terrestrial ammonia-oxidizing archaeonCa. Nitrososphaera viennensis and the ammonia-oxidizing bacteriumNitrosospira multiformisto nitrification inhibitors
inferredcites →https://doi.org/10.1111/1758-2229.12477openalex-snapshot
A hydrophobic ammonia‐oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar‐contaminated sediment
inferredcites →https://doi.org/10.1111/gcb.13850openalex-snapshot
Carbon input by roots into the soil: Quantification of rhizodeposition from root to ecosystem scale
inferredcites →https://doi.org/10.1111/j.1462-2920.2008.01613.xopenalex-snapshot
Ammonia‐oxidizing archaea: important players in paddy rhizosphere soil?
inferredcites →https://doi.org/10.1111/j.1467-985x.2010.00676_9.xopenalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1111/j.1469-8137.2006.01931.xopenalex-snapshot
Rhizodeposition shapes rhizosphere microbial community structure in organic soil
inferredcites →https://doi.org/10.1111/j.1469-8137.2007.01995.xopenalex-snapshot
Distribution of superoxide and hydrogen peroxide in Arabidopsis root and their influence on root development: possible interaction with peroxidases
inferredcites →https://doi.org/10.1111/j.1574-6941.2010.00860.xopenalex-snapshot
Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01298.xopenalex-snapshot
Archaeal abundance in relation to root and fungal exudation rates
inferredcites →https://doi.org/10.1111/j.1574-6968.1990.tb13959.xopenalex-snapshot
Isolation and characterization of hydrogen peroxide producingAerococcussp. from soil samples
inferredcites →https://doi.org/10.1111/mpp.12530openalex-snapshot
Profiling the extended phenotype of plant pathogens
inferredcites →https://doi.org/10.1111/nph.13325openalex-snapshot
Secondary metabolites in plant innate immunity: conserved function of divergent chemicals
inferredcites →https://doi.org/10.1128/aem.02802-07openalex-snapshot
Archaea Dominate the Ammonia-Oxidizing Community in the Rhizosphere of the Freshwater Macrophyte Littorella uniflora
inferredcites →https://doi.org/10.1128/aem.03730-13openalex-snapshot
A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon
inferredcites →https://doi.org/10.1128/aem.05787-11openalex-snapshot
Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil
inferredcites →https://doi.org/10.1128/aem.70.3.1821-1826.2004openalex-snapshot
Comparison of Crenarchaeal Consortia Inhabiting the Rhizosphere of Diverse Terrestrial Plants with Those in Bulk Soil in Native Environments
inferredcites →https://doi.org/10.1128/aem.71.8.4751-4760.2005openalex-snapshot
Cultivation of Mesophilic Soil Crenarchaeotes in Enrichment Cultures from Plant Roots
inferredcites →https://doi.org/10.1128/mbio.02371-20openalex-snapshot
Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments
inferredcites →https://doi.org/10.1128/msystems.00181-19openalex-snapshot
Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium
inferredcites →https://doi.org/10.1128/msystems.00566-19openalex-snapshot
Contrasting Biogeographic Patterns of Bacterial and Archaeal Diversity in the Top- and Subsoils of Temperate Grasslands
inferredcites →https://doi.org/10.1146/annurev-arplant-042811-105532openalex-snapshot
Plant Nitrogen Assimilation and Use Efficiency
inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154055openalex-snapshot
Hormonal Modulation of Plant Immunity
inferredcites →https://doi.org/10.1146/annurev-phyto-082712-102342openalex-snapshot
Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity
inferredcites →https://doi.org/10.1146/annurev.biochem.77.061606.161055openalex-snapshot
Cellular Defenses against Superoxide and Hydrogen Peroxide
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0101648openalex-snapshot
Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.2136/sssaj2005.0113openalex-snapshot
Root Influence on Nitrogen Mineralization and Nitrification in Avena barbata Rhizosphere Soil
inferredcites →https://doi.org/10.32614/cran.package.labdsvopenalex-snapshot
labdsv: Ordination and Multivariate Analysis for Ecology
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3389/fmicb.2014.00144openalex-snapshot
Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce
inferredcites →https://doi.org/10.3389/fmicb.2015.00138openalex-snapshot
Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees
inferredcites →https://doi.org/10.3389/fmicb.2019.01931openalex-snapshot
Controls and Adaptive Management of Nitrification in Agricultural Soils
inferredcites →https://doi.org/10.3389/fmicb.2020.576661openalex-snapshot
Distinct Distribution of Archaea From Soil to Freshwater to Estuary: Implications of Archaeal Composition and Function in Different Environments
inferredcites →https://doi.org/10.3389/fpls.2019.01741openalex-snapshot
Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
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