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Increased mitochondrial transcription initiation does not promote oxidative phosphorylation

https://doi.org/10.1101/2024.01.11.575236

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Replication priming and transcription initiate from precisely the same site in mouse mitochondrial DNA.

inferredcites →https://doi.org/10.1016/0092-8674(87)90013-4openalex-snapshot

Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7

inferredcites →https://doi.org/10.1016/j.cell.2007.05.046openalex-snapshot

MTERF3 Is a Negative Regulator of Mammalian mtDNA Transcription

inferredcites →https://doi.org/10.1016/j.cell.2008.09.013openalex-snapshot

RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme

inferredcites →https://doi.org/10.1016/j.cell.2017.10.036openalex-snapshot

Structural Basis of Mitochondrial Transcription Initiation

inferredcites →https://doi.org/10.1016/j.cell.2017.12.039openalex-snapshot

SnapShot: Mitochondrial Nucleoid

inferredcites →https://doi.org/10.1016/j.cell.2022.05.006openalex-snapshot

Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization

inferredcites →https://doi.org/10.1016/j.celrep.2014.05.046openalex-snapshot

In Vitro-Reconstituted Nucleoids Can Block Mitochondrial DNA Replication and Transcription

inferredcites →https://doi.org/10.1016/j.celrep.2016.07.031openalex-snapshot

Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly

inferredcites →https://doi.org/10.1016/j.celrep.2018.01.066openalex-snapshot

Kinetics and Mechanism of Mammalian Mitochondrial Ribosome Assembly

inferredcites →https://doi.org/10.1016/j.celrep.2018.03.033openalex-snapshot

PTCD1 Is Required for 16S rRNA Maturation Complex Stability and Mitochondrial Ribosome Assembly

inferredcites →https://doi.org/10.1016/j.celrep.2021.110000openalex-snapshot

The TFAM-to-mtDNA ratio defines inner-cellular nucleoid populations with distinct activity levels

inferredcites →https://doi.org/10.1016/j.cmet.2011.04.002openalex-snapshot

MTERF4 Regulates Translation by Targeting the Methyltransferase NSUN4 to the Mammalian Mitochondrial Ribosome

inferredcites →https://doi.org/10.1016/j.cmet.2013.03.006openalex-snapshot

MTERF1 Binds mtDNA to Prevent Transcriptional Interference at the Light-Strand Promoter but Is Dispensable for rRNA Gene Transcription Regulation

inferredcites →https://doi.org/10.1016/j.mito.2021.03.013openalex-snapshot

PGC1A driven enhanced mitochondrial DNA copy number predicts outcome in pediatric acute myeloid leukemia

inferredcites →https://doi.org/10.1016/j.molcel.2022.08.011openalex-snapshot

The human mitochondrial genome contains a second light strand promoter

inferredcites →https://doi.org/10.1016/s0021-9258(18)67529-5openalex-snapshot

Yeast mitochondrial RNA polymerase. Purification and properties of the catalytic subunit.

inferredcites →https://doi.org/10.1038/277192a0openalex-snapshot

Nucleotide sequence of a region of human mitochondrial DNA containing the precisely identified origin of replication

inferredcites →https://doi.org/10.1038/290470a0openalex-snapshot

tRNA punctuation model of RNA processing in human mitochondria

inferredcites →https://doi.org/10.1038/emboj.2011.392openalex-snapshot

LRPPRC is necessary for polyadenylation and coordination of translation of mitochondrial mRNAs

inferredcites →https://doi.org/10.1038/nature10435openalex-snapshot

Structure of human mitochondrial RNA polymerase

inferredcites →https://doi.org/10.1038/nature13690openalex-snapshot

POLRMT does not transcribe nuclear genes

inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot

HISAT: a fast spliced aligner with low memory requirements

inferredcites →https://doi.org/10.1038/nprot.2006.478openalex-snapshot

Organelle isolation: functional mitochondria from mouse liver, muscle and cultured filroblasts

inferredcites →https://doi.org/10.1038/s41419-021-04039-2openalex-snapshot

The requirement of mitochondrial RNA polymerase for non-small cell lung cancer cell growth

inferredcites →https://doi.org/10.1038/s41467-021-21279-0openalex-snapshot

POLRMT mutations impair mitochondrial transcription causing neurological disease

inferredcites →https://doi.org/10.1038/s41586-020-03048-zopenalex-snapshot

Small-molecule inhibitors of human mitochondrial DNA transcription

inferredcites →https://doi.org/10.1038/s41594-018-0122-9openalex-snapshot

Structural basis of mitochondrial transcription

inferredcites →https://doi.org/10.1042/ebc20170100openalex-snapshot

Mitochondrial DNA replication in mammalian cells: overview of the pathway

inferredcites →https://doi.org/10.1073/pnas.79.23.7195openalex-snapshot

Identification of initiation sites for heavy-strand and light-strand transcription in human mitochondrial DNA.

inferredcites →https://doi.org/10.1074/jbc.m109.098400openalex-snapshot

Mitochondrial and Nuclear Genomic Responses to Loss of LRPPRC Expression

inferredcites →https://doi.org/10.1074/jbc.m113.471649openalex-snapshot

The Leucine-rich Pentatricopeptide Repeat-containing Protein (LRPPRC) Does Not Activate Transcription in Mammalian Mitochondria

inferredcites →https://doi.org/10.1091/mbc.e10-01-0047openalex-snapshot

LRPPRC and SLIRP Interact in a Ribonucleoprotein Complex That Regulates Posttranscriptional Gene Expression in Mitochondria

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

inferredcites →https://doi.org/10.1093/hmg/ddt051openalex-snapshot

TWINKLE is an essential mitochondrial helicase required for synthesis of nascent D-loop strands and complete mtDNA replication

inferredcites →https://doi.org/10.1093/nar/gkaa1011openalex-snapshot

MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations

inferredcites →https://doi.org/10.1093/nar/gkq1224openalex-snapshot

TEFM (c17orf42) is necessary for transcription of human mtDNA

inferredcites →https://doi.org/10.1093/nar/gkr103openalex-snapshot

Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe

inferredcites →https://doi.org/10.1093/nar/gks802openalex-snapshot

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop

inferredcites →https://doi.org/10.1126/sciadv.1600963openalex-snapshot

POLRMT regulates the switch between replication primer formation and gene expression of mammalian mtDNA

inferredcites →https://doi.org/10.1126/sciadv.abf8631openalex-snapshot

The mitochondrial single-stranded DNA binding protein is essential for initiation of mtDNA replication

inferredcites →https://doi.org/10.1126/science.aaa0986openalex-snapshot

Replication-transcription switch in human mitochondria

inferredcites →https://doi.org/10.1146/annurev-biochem-060815-014402openalex-snapshot

Maintenance and Expression of Mammalian Mitochondrial DNA

inferredcites →https://doi.org/10.1186/1471-2105-12-480openalex-snapshot

GC-Content Normalization for RNA-Seq Data

inferredcites →https://doi.org/10.1371/journal.pgen.1005423openalex-snapshot

SLIRP Regulates the Rate of Mitochondrial Protein Synthesis and Protects LRPPRC from Degradation

inferredcites →https://doi.org/10.1371/journal.pgen.1008085openalex-snapshot

Mitochondrial fusion is required for regulation of mitochondrial DNA replication

inferredcites →https://doi.org/10.1515/hsz-2021-0416openalex-snapshot

Starting the engine of the powerhouse: mitochondrial transcription and beyond

inferredcites →https://doi.org/10.15252/embj.2021107988openalex-snapshot

Mechanism of transcription initiation and primer generation at the mitochondrial replication origin OriL

inferredcites →https://doi.org/10.15252/embr.201846198openalex-snapshot

Concerted regulation of mitochondrial and nuclear non‐coding RNAs by a dual‐targeted RNase Z

inferredcites →https://doi.org/10.15252/embr.201948101openalex-snapshot

TEFM regulates both transcription elongation and RNA processing in mitochondria

inferredcites →https://doi.org/10.18632/oncotarget.6129openalex-snapshot

Targeting mitochondrial RNA polymerase in acute myeloid leukemia

inferredcites →https://doi.org/10.26508/lsa.202101034openalex-snapshot

High levels of TFAM repress mammalian mitochondrial DNA transcription in vivo

inferredcites →https://doi.org/10.4161/cc.22777openalex-snapshot

Mitochondria “fuel” breast cancer metabolism: Fifteen markers of mitochondrial biogenesis label epithelial cancer cells, but are excluded from adjacent stromal cells

inferredcites →https://doi.org/10.7554/elife.30952openalex-snapshot

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals

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