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The GndA microprotein promotes cell growth during heat shock in Escherichia coli
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Outgoing claims: the papers this work cites, builds on, or argues with.
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An Introduction to Sequence Similarity (“Homology”) Searching
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Proteomic Detection and Validation of Translated Small Open Reading Frames
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Origins, evolution, and physiological implications of de novo genes in yeast
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The Gene Locus of the Proton-translocating NADH : Ubiquinone Oxidoreductase in Escherichia coli
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Assembly of the Escherichia coli NADH:ubiquinone oxidoreductase (respiratory complex I)
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A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance
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Mitochondrial microproteins link metabolic cues to respiratory chain biogenesis
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A vast evolutionarily transient translatome contributes to phenotype and fitness
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Oxidative stress in E. coli cells upon exposure to heat treatments
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LINC00116-encoded microprotein mitoregulin regulates fatty acid metabolism at the mitochondrial outer membrane
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An Inner Mitochondrial Membrane Microprotein from the SLC35A4 Upstream ORF Regulates Cellular Metabolism
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Conformational changes associated with cofactor/substrate binding of 6-phosphogluconate dehydrogenase from Escherichia coli and Klebsiella pneumoniae: Implications for enzyme mechanism
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Interrogation of single nucleotide polymorphisms in gnd provides a novel method for molecular serogrouping of clinically important Shiga toxin producing Escherichia coli (STEC) targeted by regulation in the United States, including the “big six” non-O157 STEC and STEC O157
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Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome
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The NADH:ubiquinone oxidoreductase (complex I) from Escherichia coli
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Purification and Characterization of Colicin E1
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Basic Local Alignment Search Tool
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The heat shock response of Escherichia coli
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Comparative Membrane Proteomics Reveals a Nonannotated E. coli Heat Shock Protein
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Production of Reactive Oxygen Species by Complex I (NADH:Ubiquinone Oxidoreductase) from Escherichia coli and Comparison to the Enzyme from Mitochondria
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Chemical and NADH-Induced, ROS-Dependent, Cross-Linking between Subunits of Complex I from Escherichia coli and Thermus thermophilus
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New Biarsenical Ligands and Tetracysteine Motifs for Protein Labeling in Vitro and in Vivo: Synthesis and Biological Applications
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Universal Single-Residue Terminal Labels for Fluorescent Live Cell Imaging of Microproteins
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Sequential Peptide Affinity (SPA) System for the Identification of Mammalian and Bacterial Protein Complexes
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Gene Ontology: tool for the unification of biology
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Proto-genes and de novo gene birth
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Mammalian cell–based optimization of the biarsenical-binding tetracysteine motif for improved fluorescence and affinity
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Peptidomic discovery of short open reading frame–encoded peptides in human cells
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Secretion of type III effectors into host cells in real time
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N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes
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Fluorescent labeling of tetracysteine-tagged proteins in intact cells
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No evidence that carotenoid pigments boost either immune or antioxidant defenses in a songbird
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De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences
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Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly
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Alt-RPL36 downregulates the PI3K-AKT-mTOR signaling pathway by interacting with TMEM24
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Accurate annotation of human protein-coding small open reading frames
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Nascent alt-protein chemoproteomics reveals a pre-60S assembly checkpoint inhibitor
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Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure
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Limb proportions show developmental plasticity in response to embryo movement
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Small open reading frames and cellular stress responses
inferredcites →https://doi.org/10.1046/j.1365-2672.1998.00482.xopenalex-snapshot
Oxygen sensitivity of heated cells of Escherichia coli O157:H7
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Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance
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Theory of prokaryotic genome evolution
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LINC00116 codes for a mitochondrial peptide linking respiration and lipid metabolism
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Coxiella burnetii inhibits host immunity by a protein phosphatase adapted from glycolysis
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Dual-function AzuCR RNA modulates carbon metabolism
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Dual-function Spot 42 RNA encodes a 15–amino acid protein that regulates the CRP transcription factor
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Identification of comS, a gene of the srfA operon that regulates the establishment of genetic competence in Bacillus subtilis.
inferredcites →https://doi.org/10.1073/pnas.91.21.10227openalex-snapshot
Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria.
inferredcites →https://doi.org/10.1074/jbc.c113.533968openalex-snapshot
A Human Short Open Reading Frame (sORF)-encoded Polypeptide That Stimulates DNA End Joining
inferredcites →https://doi.org/10.1074/jbc.m111.245696openalex-snapshot
Membrane Localization of Small Proteins in Escherichia coli
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
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The Gene Ontology knowledgebase in 2023
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Evolutionary genetics of the mitochondrial genome: insights from Drosophila
inferredcites →https://doi.org/10.1093/nar/25.6.1203openalex-snapshot
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
inferredcites →https://doi.org/10.1093/nar/30.1.207openalex-snapshot
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
inferredcites →https://doi.org/10.1093/nar/gkac240openalex-snapshot
Search and sequence analysis tools services from EMBL-EBI in 2022
inferredcites →https://doi.org/10.1093/nar/gkae1011openalex-snapshot
The PRIDE database at 20 years: 2025 update
inferredcites →https://doi.org/10.1093/nar/gkm1084openalex-snapshot
Recombineering with tolC as a Selectable/Counter-selectable Marker: remodeling the rRNA Operons of Escherichia coli
inferredcites →https://doi.org/10.1093/nar/gkm888openalex-snapshot
The ERCC1/XPF endonuclease is required for efficient single-strand annealing and gene conversion in mammalian cells
inferredcites →https://doi.org/10.1093/nar/gks485openalex-snapshot
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
inferredcites →https://doi.org/10.1093/nar/gkt1374openalex-snapshot
Rational optimization of tolC as a powerful dual selectable marker for genome engineering
inferredcites →https://doi.org/10.1093/nar/gky427openalex-snapshot
SWISS-MODEL: homology modelling of protein structures and complexes
inferredcites →https://doi.org/10.1093/nar/gkz030openalex-snapshot
The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function
inferredcites →https://doi.org/10.1093/nar/gkz734openalex-snapshot
Alternative ORFs and small ORFs: shedding light on the dark proteome
inferredcites →https://doi.org/10.1093/ve/veaa009openalex-snapshot
Properties and abundance of overlapping genes in viruses
inferredcites →https://doi.org/10.1101/gad.1.2.179openalex-snapshot
Sigma 32 synthesis can regulate the synthesis of heat shock proteins in Escherichia coli.
inferredcites →https://doi.org/10.1111/j.1365-2958.1995.tb02220.xopenalex-snapshot
A small gene, designated comS, located within the coding region of the fourth amino acid‐activation domain of srfA, is required for competence development in Bacillus subtilis
inferredcites →https://doi.org/10.1111/j.1365-2958.2008.06495.xopenalex-snapshot
Small membrane proteins found by comparative genomics and ribosome binding site models
inferredcites →https://doi.org/10.1111/mmi.14564openalex-snapshot
Uncovering small membrane proteins in pathogenic bacteria: Regulatory functions and therapeutic potential
inferredcites →https://doi.org/10.1126/science.aay0967openalex-snapshot
Active site rearrangement and structural divergence in prokaryotic respiratory oxidases
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Escherichia coli Small Proteome
inferredcites →https://doi.org/10.1128/jb.00324-13openalex-snapshot
The Escherichia coli CydX Protein Is a Member of the CydAB Cytochrome bd Oxidase Complex and Is Required for Cytochrome bd Oxidase Activity
inferredcites →https://doi.org/10.1128/jb.00869-16openalex-snapshot
The Small Protein SgrT Controls Transport Activity of the Glucose-Specific Phosphotransferase System
inferredcites →https://doi.org/10.1128/jb.00872-09openalex-snapshot
Small Stress Response Proteins in Escherichia coli : Proteins Missed by Classical Proteomic Studies
inferredcites →https://doi.org/10.1128/jb.173.12.3894-3900.1991openalex-snapshot
Nucleotide sequences of the gnd genes from nine natural isolates of Escherichia coli: evidence of intragenic recombination as a contributing factor in the evolution of the polymorphic gnd locus
inferredcites →https://doi.org/10.1128/jb.173.22.7257-7268.1991openalex-snapshot
Recombination in Escherichia coli and the definition of biological species
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Role of NAD in regulating the adhE gene of Escherichia coli
inferredcites →https://doi.org/10.1128/jb.182.21.6183-6191.2000openalex-snapshot
Acquisition of the rfb-gnd Cluster in Evolution of Escherichia coli O55 and O157
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Drug-Resistant Epimutants Exhibit Organ-Specific Stability and Induction during Murine Infections Caused by the Human Fungal Pathogen Mucor circinelloides
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Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes
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Genes within Genes in Bacterial Genomes
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Small Proteins Can No Longer Be Ignored
inferredcites →https://doi.org/10.1146/annurev.bi.55.070186.005443openalex-snapshot
THE HEAT-SHOCK RESPONSE
inferredcites →https://doi.org/10.1146/annurev.mi.47.100193.001541openalex-snapshot
REGULATION OF THE HEAT-SHOCK RESPONSE IN BACTERIA
inferredcites →https://doi.org/10.1186/1745-6150-3-1openalex-snapshot
Mathematical Biology in Biology Direct
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CAIcal: A combined set of tools to assess codon usage adaptation
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BBMerge – Accurate paired shotgun read merging via overlap
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The FUS gene is dual-coding with both proteins contributing to FUS-mediated toxicity
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Unraveling the hidden universe of small proteins in bacterial genomes
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A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
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Gene Birth Contributes to Structural Disorder Encoded by Overlapping Genes
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Origin, Evolution and Stability of Overlapping Genes in Viruses: A Systematic Review
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Western blot: Technique, theory, and trouble shooting
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The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications
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Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic
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Atomic structures of respiratory complex III2, complex IV, and supercomplex III2-IV from vascular plants
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Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41598-026-60793-3openalex-snapshot
Whole-genome sequencing of samples from a Streptococcus parasuis infection
inferred← citeshttps://doi.org/10.1101/2024.10.22.619581openalex-snapshot
Nested small open reading frames are translated from alternative transcripts
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