On the public citation graph
Origin, Evolution and Stability of Overlapping Genes in Viruses: A Systematic Review
0 signed · 195 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/cem.2609openalex-snapshot
Partial least squares discriminant analysis: taking the magic away
inferredcites →https://doi.org/10.1002/j.1460-2075.1988.tb02840.xopenalex-snapshot
Post‐transcriptional regulator (rex) of HTLV‐1 initiates expression of viral structural proteins but suppresses expression of regulatory proteins.
inferredcites →https://doi.org/10.1002/jmv.20948openalex-snapshot
Tula and Puumala hantavirus NSs ORFs are functional and the products inhibit activation of the interferon‐beta promoter
inferredcites →https://doi.org/10.1006/viro.1994.1071openalex-snapshot
New Overlapping Gene Encoded by the Cucumber Mosaic Virus Genome
inferredcites →https://doi.org/10.1006/viro.1995.0015openalex-snapshot
Tomato Bushy Stunt Virus Spread Is Regulated by Two Nested Genes That Function in Cell-to-Cell Movement and Host-Dependent Systemic Invasion
inferredcites →https://doi.org/10.1006/viro.2000.0592openalex-snapshot
Translation Initiation of a Bicistronic mRNA of Borna Disease Virus: A 16-kDa Phosphoprotein Is Initiated at an Internal Start Codon
inferredcites →https://doi.org/10.1007/bf00167112openalex-snapshot
A maximum-likelihood approach to analyzing nonoverlapping and overlapping reading frames
inferredcites →https://doi.org/10.1007/bf00330198openalex-snapshot
Lytic activity localized to membrane-spanning region of ϕX174 E protein
inferredcites →https://doi.org/10.1007/bf01733904openalex-snapshot
Patterns of nucleotide substitution in pseudogenes and functional genes
inferredcites →https://doi.org/10.1007/bf01739483openalex-snapshot
Degeneracy of the information contained in amino acid sequences: Evidence from overlaid genes
inferredcites →https://doi.org/10.1007/bf02256597openalex-snapshot
Vaccine- and Hepatitis B Immune Globulin-Induced Escape Mutations of Hepatitis B Virus Surface Antigen
inferredcites →https://doi.org/10.1007/bf02338829openalex-snapshot
A relationship between GC content and coding-sequence length
inferredcites →https://doi.org/10.1007/pl00000061openalex-snapshot
Constrained evolution with respect to gene overlap of hepatitis B virus
inferredcites →https://doi.org/10.1007/pl00006080openalex-snapshot
A Relationship Between GC Content and Coding-Sequence Length
inferredcites →https://doi.org/10.1007/pl00006185openalex-snapshot
On the Informational Content of Overlapping Genes in Prokaryotic and Eukaryotic Viruses
inferredcites →https://doi.org/10.1007/s00239-001-2309-6openalex-snapshot
Evolutionary Rate Heterogeneity in Proteins with Long Disordered Regions
inferredcites →https://doi.org/10.1007/s00239-004-2644-5openalex-snapshot
Overlapping Messages and Survivability
inferredcites →https://doi.org/10.1007/s002399910033openalex-snapshot
Detection of Signature Sequences in Overlapping Genes and Prediction of a Novel Overlapping Gene in Hepatitis G Virus
inferredcites →https://doi.org/10.1016/0022-2836(79)90249-3openalex-snapshot
Evolution of the three overlapping gene systems in G4 and φX174
inferredcites →https://doi.org/10.1016/0022-5193(80)90014-4openalex-snapshot
Informational parameters of an exact DNA base sequence
inferredcites →https://doi.org/10.1016/0022-5193(81)90239-3openalex-snapshot
Overlapping genes and information theory
inferredcites →https://doi.org/10.1016/0025-5564(80)90108-xopenalex-snapshot
Protein constraints induced by multiframe encoding
inferredcites →https://doi.org/10.1016/0042-6822(92)90301-5openalex-snapshot
Expression of ORF-69 of turnip yellow mosaic virus is necessary for viral spread in plants
inferredcites →https://doi.org/10.1016/0168-9525(91)90326-lopenalex-snapshot
Diversity of coding strategies in influenza viruses
inferredcites →https://doi.org/10.1016/j.cell.2016.11.031openalex-snapshot
Functional Segregation of Overlapping Genes in HIV
inferredcites →https://doi.org/10.1016/j.chom.2017.07.019openalex-snapshot
Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses
inferredcites →https://doi.org/10.1016/j.gene.2007.07.013openalex-snapshot
Pattern of nucleotide substitution in the overlapping nonstructural genes of influenza A virus and implication for the genetic diversity of the H5N1 subtype
inferredcites →https://doi.org/10.1016/j.jtbi.2016.09.018openalex-snapshot
The combinatorics of overlapping genes
inferredcites →https://doi.org/10.1016/j.meegid.2009.10.006openalex-snapshot
Evolutionary selection associated with the multi-function of overlapping genes in the hepatitis B virus
inferredcites →https://doi.org/10.1016/j.str.2006.05.012openalex-snapshot
The Crystal Structure of ORF-9b, a Lipid Binding Protein from the SARS Coronavirus
inferredcites →https://doi.org/10.1016/j.tibs.2004.04.007openalex-snapshot
Crystal structure of p19 ? a universal suppressor of RNA silencing
inferredcites →https://doi.org/10.1016/j.virol.2008.09.024openalex-snapshot
Inhibition of long-distance movement of RNA silencing signals in Nicotiana benthamiana by Apple chlorotic leaf spot virus 50 kDa movement protein
inferredcites →https://doi.org/10.1016/j.virol.2009.08.035openalex-snapshot
A novel interaction between the human papillomavirus type 16 E2 and E1^E4 proteins leads to stabilization of E2
inferredcites →https://doi.org/10.1016/j.virol.2013.02.027openalex-snapshot
Influence of overlapping genes on the evolution of human hepatitis B virus
inferredcites →https://doi.org/10.1016/j.virol.2017.09.014openalex-snapshot
Identification of the interaction and interaction domains of chicken anemia virus VP2 and VP3 proteins
inferredcites →https://doi.org/10.1016/j.virol.2019.03.017openalex-snapshot
Asymmetric evolution in viral overlapping genes is a source of selective protein adaptation
inferredcites →https://doi.org/10.1016/j.virol.2020.03.007openalex-snapshot
New insights into the evolutionary features of viral overlapping genes by discriminant analysis
inferredcites →https://doi.org/10.1016/j.virusres.2005.03.030openalex-snapshot
Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomes
inferredcites →https://doi.org/10.1016/j.virusres.2008.01.008openalex-snapshot
Molecular and functional characterization of two infectious salmon anaemia virus (ISAV) proteins with type I interferon antagonizing activity
inferredcites →https://doi.org/10.1016/j.virusres.2009.03.004openalex-snapshot
The interplay between infectious pancreatic necrosis virus (IPNV) and the IFN system: IFN signaling is inhibited by IPNV infection
inferredcites →https://doi.org/10.1016/j.virusres.2014.11.018openalex-snapshot
Infectious pancreatic necrosis virus proteins VP2, VP3, VP4 and VP5 antagonize IFNa1 promoter activation while VP1 induces IFNa1
inferredcites →https://doi.org/10.1016/s0022-5193(88)80034-1openalex-snapshot
Informational parameters of nucleic acid and molecular evolution
inferredcites →https://doi.org/10.1016/s0042-6822(02)00102-2openalex-snapshot
The Potato virus X TGBp3 protein associates with the ER network for virus cell-to-cell movement
inferredcites →https://doi.org/10.1016/s0092-8674(03)00984-xopenalex-snapshot
Size Selective Recognition of siRNA by an RNA Silencing Suppressor
inferredcites →https://doi.org/10.1016/s0378-1119(99)00228-0openalex-snapshot
Genome evolution and the evolution of exon-shuffling — a review
inferredcites →https://doi.org/10.1016/s1386-6532(02)00049-5openalex-snapshot
The virological and clinical significance of mutations in the overlapping envelope and polymerase genes of hepatitis B virus
inferredcites →https://doi.org/10.1017/cbo9780511661686openalex-snapshot
Molecular Basis of Virus Evolution
inferredcites →https://doi.org/10.1023/a:1008130318633openalex-snapshot
Conserved and Non-Conserved Regions in the Sendai Virus Genome: Evolution of a Gene Possessing Overlapping Reading Frames
inferredcites →https://doi.org/10.1023/a:1024157714736openalex-snapshot
Birth of ‘Human-Specific’ Genes During Primate Evolution
inferredcites →https://doi.org/10.1023/b:viru.0000012262.89898.c7openalex-snapshot
Base Usage and Dinucleotide Frequency of Infectious Bursal Disease Virus
inferredcites →https://doi.org/10.1038/264034a0openalex-snapshot
Overlapping genes in bacteriophage φX174
inferredcites →https://doi.org/10.1038/265687a0openalex-snapshot
Nucleotide sequence of bacteriophage φX174 DNA
inferredcites →https://doi.org/10.1038/276236a0openalex-snapshot
Nucleotide sequence of bacteriophage G4 DNA
inferredcites →https://doi.org/10.1038/nbt0308-303openalex-snapshot
What is principal component analysis?
inferredcites →https://doi.org/10.1038/ncomms6181openalex-snapshot
A viral peptide that targets mitochondria protects against neuronal degeneration in models of Parkinson’s disease
inferredcites →https://doi.org/10.1038/nm1201-1306openalex-snapshot
A novel influenza A virus mitochondrial protein that induces cell death
inferredcites →https://doi.org/10.1038/nrg1204openalex-snapshot
The origin of new genes: glimpses from the young and old
inferredcites →https://doi.org/10.1038/nrmicro1395openalex-snapshot
The Tombusvirus-encoded P19: from irrelevance to elegance
inferredcites →https://doi.org/10.1038/s41568-019-0162-4openalex-snapshot
Alternative tumour-specific antigens
inferredcites →https://doi.org/10.1038/s41586-020-2012-7openalex-snapshot
A pneumonia outbreak associated with a new coronavirus of probable bat origin
inferredcites →https://doi.org/10.1038/sj.embor.7400583openalex-snapshot
The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double‐stranded RNA recognition
inferredcites →https://doi.org/10.1038/srep35759openalex-snapshot
Substitution rate and natural selection in parvovirus B19
inferredcites →https://doi.org/10.1039/c8an00599kopenalex-snapshot
Partial least squares-discriminant analysis (PLS-DA) for classification of high-dimensional (HD) data: a review of contemporary practice strategies and knowledge gaps
inferredcites →https://doi.org/10.1073/pnas.0504439102openalex-snapshot
MicroRNA-binding viral protein interferes with Arabidopsis development
inferredcites →https://doi.org/10.1073/pnas.0703238104openalex-snapshot
Rapid asymmetric evolution of a dual-coding tumor suppressor INK4a/ARF locus contradicts its function
inferredcites →https://doi.org/10.1073/pnas.1102932108openalex-snapshot
Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome
inferredcites →https://doi.org/10.1073/pnas.1111303109openalex-snapshot
Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site
inferredcites →https://doi.org/10.1073/pnas.1605739113openalex-snapshot
Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic
inferredcites →https://doi.org/10.1073/pnas.89.20.9489openalex-snapshot
Origins of genes: "big bang" or continuous creation?
inferredcites →https://doi.org/10.1073/pnas.94.11.5843openalex-snapshot
Apoptin induces apoptosis in human transformed and malignant cells but not in normal cells
inferredcites →https://doi.org/10.1073/pnas.97.8.4297openalex-snapshot
Genetic evidence that the bacteriophage φX174 lysis protein inhibits cell wall synthesis
inferredcites →https://doi.org/10.1074/jbc.m113.472654openalex-snapshot
An Out-of-frame Overlapping Reading Frame in the Ataxin-1 Coding Sequence Encodes a Novel Ataxin-1 Interacting Protein
inferredcites →https://doi.org/10.1074/jbc.rev119.006348openalex-snapshot
Translational recoding signals: Expanding the synthetic biology toolbox
inferredcites →https://doi.org/10.1084/jem.183.3.1131openalex-snapshot
Utilization of an alternative open reading frame of a normal gene in generating a novel human cancer antigen.
inferredcites →https://doi.org/10.1093/bioinformatics/bti007openalex-snapshot
Detecting overlapping coding sequences with pairwise alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btm472openalex-snapshot
Annotation of selection strengths in viral genomes
inferredcites →https://doi.org/10.1093/database/bas025openalex-snapshot
HAltORF: a database of predicted out-of-frame alternative open reading frames in human
inferredcites →https://doi.org/10.1093/emboj/cdf312openalex-snapshot
A viral protein suppresses RNA silencing and binds silencing‐generated, 21‐ to 25‐nucleotide double‐stranded RNAs
inferredcites →https://doi.org/10.1093/gbe/evu294openalex-snapshot
A Simple Method for Estimating the Strength of Natural Selection on Overlapping Genes
inferredcites →https://doi.org/10.1093/molbev/msaa087openalex-snapshot
OLGenie: Estimating Natural Selection to Predict Functional Overlapping Genes
inferredcites →https://doi.org/10.1093/molbev/mss179openalex-snapshot
Evolution of Viral Proteins Originated De Novo by Overprinting
inferredcites →https://doi.org/10.1093/molbev/mst094openalex-snapshot
The Effect of Gene Overlapping on the Rate of RNA Virus Evolution
inferredcites →https://doi.org/10.1093/molbev/msy155openalex-snapshot
A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences
inferredcites →https://doi.org/10.1093/nar/gkaa330openalex-snapshot
COVTree: Coevolution in OVerlapped sequences by Tree analysis server
inferredcites →https://doi.org/10.1093/nar/gku981openalex-snapshot
Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses
inferredcites →https://doi.org/10.1093/nar/gkv1218openalex-snapshot
Death of a dogma: eukaryotic mRNAs can code for more than one protein
inferredcites →https://doi.org/10.1093/nar/gkw441openalex-snapshot
Mutational analysis of the Potyviridae transcriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins
inferredcites →https://doi.org/10.1093/oso/9780199211128.001.0001openalex-snapshot
The Evolution and Emergence of RNA Viruses
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003859openalex-snapshot
A Dependent-Rates Model and an MCMC-Based Methodology for the Maximum-Likelihood Analysis of Sequences with Overlapping Reading Frames
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040410openalex-snapshot
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
inferredcites →https://doi.org/10.1093/ve/veaa009openalex-snapshot
Properties and abundance of overlapping genes in viruses
inferredcites →https://doi.org/10.1094/mpmi-19-0948openalex-snapshot
Hibiscus chlorotic ringspot virus p27 and Its Isoforms Affect Symptom Expression and Potentiate Virus Movement in Kenaf (Hibiscus cannabinus L.)
inferredcites →https://doi.org/10.1096/fj.15-279620openalex-snapshot
Manipulation of the N‐terminal sequence of the Borna disease virus X protein improves its mitochondrial targeting and neuroprotective potential
inferredcites →https://doi.org/10.1099/0022-1317-83-7-1799openalex-snapshot
Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame products
inferredcites →https://doi.org/10.1099/jgv.0.000307openalex-snapshot
Different patterns of codon usage in the overlapping polymerase and surface genes of hepatitis B virus suggest a de novo origin by modular evolution
inferredcites →https://doi.org/10.1099/vir.0.042499-0openalex-snapshot
Non-canonical translation in RNA viruses
inferredcites →https://doi.org/10.1099/vir.0.047175-0openalex-snapshot
The X proteins of bornaviruses interfere with type I interferon signalling
inferredcites →https://doi.org/10.1099/vir.0.80902-0openalex-snapshot
Characterization of Striped jack nervous necrosis virus subgenomic RNA3 and biological activities of its encoded protein B2
inferredcites →https://doi.org/10.1099/vir.0.81375-0openalex-snapshot
Origin and evolution of overlapping genes in the family Microviridae
inferredcites →https://doi.org/10.1099/vir.0.82906-0openalex-snapshot
Independent evolution of overlapping polymerase and surface protein genes of hepatitis B virus
inferredcites →https://doi.org/10.1101/gr.133249.111openalex-snapshot
Observation of dually decoded regions of the human genome using ribosome profiling data
inferredcites →https://doi.org/10.1101/gr.230938.117openalex-snapshot
Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship
inferredcites →https://doi.org/10.1101/gr.6305707openalex-snapshot
The evolution of genome compression and genomic novelty in RNA viruses
inferredcites →https://doi.org/10.1105/tpc.018986openalex-snapshot
Viral Virulence Protein Suppresses RNA Silencing–Mediated Defense but Upregulates the Role of MicroRNA in Host Gene Expression[W]
inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb00075.xopenalex-snapshot
STABILITY AND EVOLUTION OF OVERLAPPING GENES
inferredcites →https://doi.org/10.1111/j.1365-2893.2005.00613.xopenalex-snapshot
Response to long‐term lamivudine treatment (up to 5 years) in patients with severe chronic hepatitis B, role of genotype and drug resistance
inferredcites →https://doi.org/10.1111/j.1462-5822.2008.01116.xopenalex-snapshot
The proapoptotic influenza A virus protein PB1-F2 regulates viral polymerase activity by interaction with the PB1 protein
inferredcites →https://doi.org/10.1111/j.1469-1809.1938.tb02189.xopenalex-snapshot
THE STATISTICAL UTILIZATION OF MULTIPLE MEASUREMENTS
inferredcites →https://doi.org/10.1111/j.1749-6632.1980.tb27987.xopenalex-snapshot
A THEORY OF MODULAR EVOLUTION FOR BACTERIOPHAGES*
inferredcites →https://doi.org/10.1126/science.1121586openalex-snapshot
Large-Scale Sequence Analysis of Avian Influenza Isolates
inferredcites →https://doi.org/10.1128/jvi.00574-19openalex-snapshot
The HIV-1 Antisense Protein ASP Is a Transmembrane Protein of the Cell Surface and an Integral Protein of the Viral Envelope
inferredcites →https://doi.org/10.1128/jvi.00595-09openalex-snapshot
Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation
inferredcites →https://doi.org/10.1128/jvi.03388-12openalex-snapshot
Tyrosine Phosphorylation of the Triple Gene Block Protein 3 Regulates Cell-to-Cell Movement and Protein Interactions of Potato Mop-Top Virus
inferredcites →https://doi.org/10.1128/jvi.68.1.346-351.1994openalex-snapshot
A single chicken anemia virus protein induces apoptosis
inferredcites →https://doi.org/10.1128/jvi.73.10.8647-8656.1999openalex-snapshot
Comparative Genomics of Streptococcus thermophilus Phage Species Supports a Modular Evolution Theory
inferredcites →https://doi.org/10.1128/jvi.75.17.7966-7972.2001openalex-snapshot
Simultaneous Positive and Purifying Selection on Overlapping Reading Frames of thetatandvprGenes of Simian Immunodeficiency Virus
inferredcites →https://doi.org/10.1128/jvi.76.24.12813-12822.2002openalex-snapshot
The Complementary Strand of the Human T-Cell Leukemia Virus Type 1 RNA Genome Encodes a bZIP Transcription Factor That Down-Regulates Viral Transcription
inferredcites →https://doi.org/10.1128/jvi.77.11.6216-6226.2003openalex-snapshot
Formation of Disulfide-Linked Complexes between the Three Minor Envelope Glycoproteins (GP 2b , GP 3 , and GP 4 ) of Equine Arteritis Virus
inferredcites →https://doi.org/10.1128/jvi.77.5.3031-3040.2003openalex-snapshot
An Umbraviral Protein, Involved in Long-Distance RNA Movement, Binds Viral RNA and Forms Unique, Protective Ribonucleoprotein Complexes
inferredcites →https://doi.org/10.1146/annurev.ge.17.120183.002435openalex-snapshot
OVERLAPPING GENES
inferredcites →https://doi.org/10.1146/annurev.genet.38.072902.092831openalex-snapshot
Duplication and Divergence: The Evolution of New Genes and Old Ideas
inferredcites →https://doi.org/10.1186/1471-2105-7-75openalex-snapshot
Detecting overlapping coding sequences in virus genomes
inferredcites →https://doi.org/10.1186/1471-2105-9-304openalex-snapshot
Investigating selection on viruses: a statistical alignment approach
inferredcites →https://doi.org/10.1186/1471-2148-8-31openalex-snapshot
The origin of a novel gene through overprinting in Escherichia coli
inferredcites →https://doi.org/10.1186/1471-2164-9-122openalex-snapshot
Bioinformatics prediction of overlapping frameshifted translation products in mammalian transcripts
inferredcites →https://doi.org/10.1186/s12862-015-0558-zopenalex-snapshot
Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting
inferredcites →https://doi.org/10.1186/s12977-019-0501-2openalex-snapshot
p30 protein: a critical regulator of HTLV-1 viral latency and host immunity
inferredcites →https://doi.org/10.1186/s12985-020-01402-1openalex-snapshot
Characterization of accessory genes in coronavirus genomes
inferredcites →https://doi.org/10.1186/s13059-015-0603-7openalex-snapshot
FRESCo: finding regions of excess synonymous constraint in diverse viruses
inferredcites →https://doi.org/10.1186/s13062-016-0128-3openalex-snapshot
Gene overlapping and size constraints in the viral world
inferredcites →https://doi.org/10.1242/jcs.1987.supplement_7.22openalex-snapshot
Molecular evolution of viruses; ‘trees’, ‘clocks’ and ‘modules’
inferredcites →https://doi.org/10.1261/rna.682507openalex-snapshot
The birth of new exons: Mechanisms and evolutionary consequences
inferredcites →https://doi.org/10.1371/journal.pcbi.0030091openalex-snapshot
A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1000734openalex-snapshot
A Human-Specific De Novo Protein-Coding Gene Associated with Human Brain Functions
inferredcites →https://doi.org/10.1371/journal.pcbi.1003162openalex-snapshot
Viral Proteins Originated De Novo by Overprinting Can Be Identified by Codon Usage: Application to the “Gene Nursery” of Deltaretroviruses
inferredcites →https://doi.org/10.1371/journal.pgen.1001284openalex-snapshot
Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
inferredcites →https://doi.org/10.1371/journal.pgen.1004559openalex-snapshot
Early Mesozoic Coexistence of Amniotes and Hepadnaviridae
inferredcites →https://doi.org/10.1371/journal.pone.0003996openalex-snapshot
A Method for the Simultaneous Estimation of Selection Intensities in Overlapping Genes
inferredcites →https://doi.org/10.1371/journal.pone.0070698openalex-snapshot
Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome
inferredcites →https://doi.org/10.1371/journal.pone.0147619openalex-snapshot
Positive Selection or Free to Vary? Assessing the Functional Significance of Sequence Change Using Molecular Dynamics
inferredcites →https://doi.org/10.1371/journal.pone.0158419openalex-snapshot
Hepatitis C Virus Frameshift/Alternate Reading Frame Protein Suppresses Interferon Responses Mediated by Pattern Recognition Receptor Retinoic-Acid-Inducible Gene-I
inferredcites →https://doi.org/10.1371/journal.pone.0202513openalex-snapshot
Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes
inferredcites →https://doi.org/10.1371/journal.ppat.1002067openalex-snapshot
The Influenza Virus Protein PB1-F2 Inhibits the Induction of Type I Interferon at the Level of the MAVS Adaptor Protein
inferredcites →https://doi.org/10.1371/journal.ppat.1002413openalex-snapshot
Norovirus Regulation of the Innate Immune Response and Apoptosis Occurs via the Product of the Alternative Open Reading Frame 4
inferredcites →https://doi.org/10.1371/journal.ppat.1003474openalex-snapshot
Evasion of Antiviral Innate Immunity by Theiler's Virus L* Protein through Direct Inhibition of RNase L
inferredcites →https://doi.org/10.1371/journal.ppat.1005427openalex-snapshot
Selective Degradation of Host RNA Polymerase II Transcripts by Influenza A Virus PA-X Host Shutoff Protein
inferredcites →https://doi.org/10.1534/genetics.118.301249openalex-snapshot
Gene Birth Contributes to Structural Disorder Encoded by Overlapping Genes
inferredcites →https://doi.org/10.3233/isb-2012-0452openalex-snapshot
Coordinated evolution of the Hepatitis B Virus Polymerase
inferredcites →https://doi.org/10.3389/fcell.2020.00524openalex-snapshot
Apoptin as a Tumor-Specific Therapeutic Agent: Current Perspective on Mechanism of Action and Delivery Systems
inferredcites →https://doi.org/10.3389/fmicb.2017.02615openalex-snapshot
HTLV-1 HBZ Viral Protein: A Key Player in HTLV-1 Mediated Diseases
inferredcites →https://doi.org/10.4049/jimmunol.161.7.3596openalex-snapshot
A Breast and Melanoma-Shared Tumor Antigen: T Cell Responses to Antigenic Peptides Translated from Different Open Reading Frames
inferredcites →https://doi.org/10.4049/jimmunol.168.5.2402openalex-snapshot
Identification of BING-4 Cancer Antigen Translated From an Alternative Open Reading Frame of a Gene in the Extended MHC Class II Region Using Lymphocytes From a Patient With a Durable Complete Regression Following Immunotherapy
inferredcites →https://doi.org/10.4049/jimmunol.170.3.1490openalex-snapshot
CD4+ Th2 Cell Recognition of HLA-DR-Restricted Epitopes Derived from CAMEL: A Tumor Antigen Translated in an Alternative Open Reading Frame
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/jobm.202300664openalex-snapshot
Investigation of CaMV‐host co‐evolution through synonymous codon pattern
inferred← citeshttps://doi.org/10.1007/s00239-025-10284-2openalex-snapshot
Systematic Detection of Alternative Open Reading Frames (altORFs) in Cancer Driver Genes
inferred← citeshttps://doi.org/10.1007/s00592-026-02719-zopenalex-snapshot
Converging TCF7L2 and CDKAL1 pathways in the pathogenesis of type 2 diabetes mellitus
inferred← citeshttps://doi.org/10.1007/s13337-025-00931-zopenalex-snapshot
Prevalence, genetic diversity, and phylogenetic analysis of apple stem grooving virus in low-chilling apple cultivars
inferred← citeshttps://doi.org/10.1016/j.chom.2022.06.008openalex-snapshot
The logic of virus evolution
inferred← citeshttps://doi.org/10.1016/j.coviro.2021.10.009openalex-snapshot
Computational methods for inferring location and genealogy of overlapping genes in virus genomes: approaches and applications
inferred← citeshttps://doi.org/10.1016/j.isci.2023.107394openalex-snapshot
Selection for immune evasion in SARS-CoV-2 revealed by high-resolution epitope mapping and sequence analysis
inferred← citeshttps://doi.org/10.1016/j.jbc.2024.107218openalex-snapshot
Emergence of two distinct spatial folds in a pair of plant virus proteins encoded by nested genes
inferred← citeshttps://doi.org/10.1016/j.jcv.2022.105105openalex-snapshot
A 336-nucleotide in-frame deletion in ORF7a gene of SARS-CoV-2 identified in genomic surveillance by next-generation sequencing
inferred← citeshttps://doi.org/10.1016/j.virol.2025.110456openalex-snapshot
Origin and function of anti-interferon type I viral proteins
inferred← citeshttps://doi.org/10.1016/j.virusres.2024.199397openalex-snapshot
Cassava brown streak virus evolves with a nucleotide-substitution rate that is typical for the family Potyviridae
inferred← citeshttps://doi.org/10.1038/s41467-023-37068-wopenalex-snapshot
Structural conservation of HBV-like capsid proteins over hundreds of millions of years despite the shift from non-enveloped to enveloped life-style
inferred← citeshttps://doi.org/10.1038/s41467-025-59154-xopenalex-snapshot
Endemism shapes viral ecology and evolution in globally distributed hydrothermal vent ecosystems
inferred← citeshttps://doi.org/10.1093/ve/veae049openalex-snapshot
Bacteriophage Φ21’s receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity
inferred← citeshttps://doi.org/10.1093/ve/veaf014openalex-snapshot
Evolutionary dynamics and molecular epidemiology of H1N1 pandemic 2009 influenza A viruses across swine farms in Denmark
inferred← citeshttps://doi.org/10.1098/rstb.2025.0078openalex-snapshot
MTALTCO1: a 259 amino-acid long mtDNA-encoded alternative protein that challenges conventional understandings of mitochondrial genomics
inferred← citeshttps://doi.org/10.1101/2022.06.01.494373openalex-snapshot
Selection for immune evasion in SARS-CoV-2 revealed by high-resolution epitope mapping combined with genome sequence analysis
inferred← citeshttps://doi.org/10.1101/2024.02.05.578984openalex-snapshot
Reconceptualizing programmed transcriptional slippage in RNA viruses
inferred← citeshttps://doi.org/10.1101/2024.06.29.601336openalex-snapshot
The GndA microprotein promotes cell growth during heat shock in Escherichia coli
inferred← citeshttps://doi.org/10.1101/2025.11.07.687268openalex-snapshot
Designing Convergent Overlapping Genes with Transformer Encoder Models and Lightweight Structural Proxies
inferred← citeshttps://doi.org/10.1101/gr.280157.124openalex-snapshot
De novo gene birth and the conundrum of ORFan genes in bacteria
inferred← citeshttps://doi.org/10.1126/science.adg9091openalex-snapshot
The mechanism of the phage-encoded protein antibiotic from ΦX174
inferred← citeshttps://doi.org/10.1128/jvi.00840-26openalex-snapshot
What a tangled web we weave: how agriculture, a polyphagous insect vector, and rampant recombination drove the emergence, evolution, and economic importance of the geminivirus beet curly top virus in western North America
inferred← citeshttps://doi.org/10.1128/mbio.01008-25openalex-snapshot
Encephalomyocarditis virus protein 2B* interacts with 14-3-3 proteins through a phosphorylated C-terminal binding motif
inferred← citeshttps://doi.org/10.1128/mbio.02120-24openalex-snapshot
Reconceptualizing transcriptional slippage in plant RNA viruses
inferred← citeshttps://doi.org/10.1128/spectrum.02351-22openalex-snapshot
Three Novel Antisense Overlapping Genes in E. coli O157:H7 EDL933
inferred← citeshttps://doi.org/10.1128/spectrum.03802-23openalex-snapshot
Creation of the HIV-1 antisense gene asp coincided with the emergence of the pandemic group M and is associated with faster disease progression
inferred← citeshttps://doi.org/10.3389/fimmu.2022.801915openalex-snapshot
Are There Hidden Genes in DNA/RNA Vaccines?
inferred← citeshttps://doi.org/10.3389/fmicb.2022.803241openalex-snapshot
A Large-Scale Genome-Based Survey of Acidophilic Bacteria Suggests That Genome Streamlining Is an Adaption for Life at Low pH
inferred← citeshttps://doi.org/10.3390/genes13010053openalex-snapshot
Effects of the Expression of Random Sequence Clones on Growth and Transcriptome Regulation in Escherichia coli
inferred← citeshttps://doi.org/10.3390/genes14091747openalex-snapshot
The Stability and Evolution of Genes and Genomes
inferred← citeshttps://doi.org/10.3390/pathogens10101333openalex-snapshot
Variable Proportions of Phylogenetic Clustering and Low Levels of Antiviral Drug Resistance among the Major HBV Sub-Genotypes in the Middle East and North Africa
inferred← citeshttps://doi.org/10.3390/v18030381openalex-snapshot
The Gene Encoding the Antisense Protein ASP of HIV-1: Origin, Distribution and Maintenance
inferred← citeshttps://doi.org/10.3748/wjg.v28.i27.3282openalex-snapshot
Hepatitis B and circadian rhythm of the liver
inferred← citeshttps://doi.org/10.47363/jvrr/2024(5)164openalex-snapshot
Viruses Follow an Evolutionary Pathway
inferred← citeshttps://doi.org/10.64898/2026.08.23.746553openalex-snapshot
The diverse functions of viral microproteins
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.