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A stable Netrin-1 fluorescent reporter chicken reveals cell-specific molecular signatures during optic fissure closure

https://doi.org/10.1101/2024.10.01.616014
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Outgoing claims: the papers this work cites, builds on, or argues with.

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A series of normal stages in the development of the chick embryo
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The circadian gene Arntl2 on distal mouse chromosome 6 controls thymocyte apoptosis
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Eye Morphogenesis and Patterning of the Optic Vesicle
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Blocking Apoptotic Signaling Rescues Axon Guidance in Netrin Mutants
inferredcites →https://doi.org/10.1016/j.celrep.2015.07.028openalex-snapshot
Complete Loss of Netrin-1 Results in Embryonic Lethality and Severe Axon Guidance Defects without Increased Neural Cell Death
inferredcites →https://doi.org/10.1016/j.celrep.2023.113369openalex-snapshot
Netrin-1 feedforward mechanism promotes pancreatic cancer liver metastasis via hepatic stellate cell activation, retinoid, and ELF3 signaling
inferredcites →https://doi.org/10.1016/j.cub.2004.05.020openalex-snapshot
Novel Role for Netrins in Regulating Epithelial Behavior during Lung Branching Morphogenesis
inferredcites →https://doi.org/10.1016/j.gep.2023.119344openalex-snapshot
Cell adhesion marker expression dynamics during fusion of the optic fissure
inferredcites →https://doi.org/10.1016/j.stemcr.2015.10.008openalex-snapshot
FGF, Insulin, and SMAD Signaling Cooperate for Avian Primordial Germ Cell Self-Renewal
inferredcites →https://doi.org/10.1016/j.tcm.2012.06.010openalex-snapshot
Netrin Ligands and Receptors: Lessons From Neurons to the Endothelium
inferredcites →https://doi.org/10.1016/s0092-8674(00)81795-xopenalex-snapshot
Netrin-1 Is Required for Commissural Axon Guidance in the Developing Vertebrate Nervous System
inferredcites →https://doi.org/10.1016/s0962-8924(98)01359-2openalex-snapshot
Developmental roles of HGF/SF and its receptor, the c-Met tyrosine kinase
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Fiji: an open-source platform for biological-image analysis
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Salmon provides fast and bias-aware quantification of transcript expression
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/nprot.2013.143openalex-snapshot
Genome engineering using the CRISPR-Cas9 system
inferredcites →https://doi.org/10.1038/nrc779openalex-snapshot
Scatter-factor and semaphorin receptors: cell signalling for invasive growth
inferredcites →https://doi.org/10.1038/nrm2142openalex-snapshot
Netrins: beyond the brain
inferredcites →https://doi.org/10.1038/nrm3012openalex-snapshot
MET signalling: principles and functions in development, organ regeneration and cancer
inferredcites →https://doi.org/10.1038/s41467-020-20812-xopenalex-snapshot
Direct allele introgression into pure chicken breeds using Sire Dam Surrogate (SDS) mating
inferredcites →https://doi.org/10.1038/s41598-019-40055-1openalex-snapshot
Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
inferredcites →https://doi.org/10.1073/pnas.0405984101openalex-snapshot
The axonal attractant Netrin-1 is an angiogenic factor
inferredcites →https://doi.org/10.1073/pnas.0709810105openalex-snapshot
Netrin-1 expression confers a selective advantage for tumor cell survival in metastatic breast cancer
inferredcites →https://doi.org/10.1093/bioinformatics/btn615openalex-snapshot
AmiGO: online access to ontology and annotation data
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/nar/gkac194openalex-snapshot
DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
inferredcites →https://doi.org/10.1093/nar/gkt214openalex-snapshot
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
inferredcites →https://doi.org/10.1097/01.icu.0000243020.82380.f6openalex-snapshot
Uveal coloboma: clinical and basic science update
inferredcites →https://doi.org/10.1136/jmg.2004.025494openalex-snapshot
Ocular coloboma: a reassessment in the age of molecular neuroscience
inferredcites →https://doi.org/10.1146/annurev.cellbio.17.1.255openalex-snapshot
Early Eye Development in Vertebrates
inferredcites →https://doi.org/10.1159/000513880openalex-snapshot
Netrins: Evolutionarily Conserved Regulators of Epithelial Fusion and Closure in Development and Wound Healing
inferredcites →https://doi.org/10.1167/iovs.61.5.35openalex-snapshot
Autofluorescent Granules of the Human Retinal Pigment Epithelium: Phenotypes, Intracellular Distribution, and Age-Related Topography
inferredcites →https://doi.org/10.1172/jci95442openalex-snapshot
Mutations in the netrin-1 gene cause congenital mirror movements
inferredcites →https://doi.org/10.1186/gb-2014-15-1-r1openalex-snapshot
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
inferredcites →https://doi.org/10.1186/s13059-016-1145-3openalex-snapshot
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
inferredcites →https://doi.org/10.1242/dev.044529openalex-snapshot
Netrins: versatile extracellular cues with diverse functions
inferredcites →https://doi.org/10.1242/dev.068338openalex-snapshot
Mechanisms of tissue fusion during development
inferredcites →https://doi.org/10.1242/dev.127.1.13openalex-snapshot
netrin 1 is required for semicircular canal formation in the mouse inner ear
inferredcites →https://doi.org/10.1242/dev.128942openalex-snapshot
Phenotypic analysis of mice completely lacking Netrin-1
inferredcites →https://doi.org/10.1242/dev.144519openalex-snapshot
Distinct functions for netrin 1 in chicken and murine semicircular canal morphogenesis
inferredcites →https://doi.org/10.1242/dev.201886openalex-snapshot
Netrin 1 directs vascular patterning and maturity in the developing kidney
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.18240/ijo.2020.02.02openalex-snapshot
Netrin-1 promotes epithelium repair in corneal injury
inferredcites →https://doi.org/10.3389/fcell.2020.620774openalex-snapshot
Closing the Gap: Mechanisms of Epithelial Fusion During Optic Fissure Closure
inferredcites →https://doi.org/10.3389/fddev.2022.898568openalex-snapshot
Simple Autofluorescence-Restrictive Sorting of eGFP+ RPE Cells Allows Reliable Assessment of Targeted Retinal Gene Therapy
inferredcites →https://doi.org/10.3389/fncel.2018.00195openalex-snapshot
Neuronal Growth Cone Size-Dependent and -Independent Parameters of Microtubule Polymerization
inferredcites →https://doi.org/10.3390/biom13020293openalex-snapshot
Identification of Novel Coloboma Candidate Genes through Conserved Gene Expression Analyses across Four Vertebrate Species
inferredcites →https://doi.org/10.3390/ijms21082760openalex-snapshot
In Vivo Analysis of Optic Fissure Fusion in Zebrafish: Pioneer Cells, Basal Lamina, Hyaloid Vessels, and How Fissure Fusion is Affected by BMP
inferredcites →https://doi.org/10.7554/elife.43877openalex-snapshot
Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential mediator of epithelial fusion
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