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Plasmids Across Datasets: Resistance, Virulence, Mobility, and Host Taxonomy

https://doi.org/10.1101/2025.01.30.635773

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4939-9877-7_19openalex-snapshot

Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan

inferredcites →https://doi.org/10.1016/j.cell.2024.01.039openalex-snapshot

A cryptic plasmid is among the most numerous genetic elements in the human gut

inferredcites →https://doi.org/10.1016/j.mib.2022.102152openalex-snapshot

Ecological dynamics of plasmid transfer and persistence in microbial communities

inferredcites →https://doi.org/10.1016/j.mib.2024.102449openalex-snapshot

The winding journey of conjugative plasmids toward a novel host cell

inferredcites →https://doi.org/10.1016/j.plasmid.2004.10.006openalex-snapshot

The plasmids of Borrelia burgdorferi: essential genetic elements of a pathogen

inferredcites →https://doi.org/10.1016/j.tim.2018.06.007openalex-snapshot

Evolution of Plasmid-Mediated Antibiotic Resistance in the Clinical Context

inferredcites →https://doi.org/10.1038/s41467-021-22849-yopenalex-snapshot

Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities

inferredcites →https://doi.org/10.1038/s41467-024-48352-8openalex-snapshot

The evolution of antibiotic resistance islands occurs within the framework of plasmid lineages

inferredcites →https://doi.org/10.1038/s41564-024-01844-1openalex-snapshot

Expanding the diversity of origin of transfer-containing sequences in mobilizable plasmids

inferredcites →https://doi.org/10.1038/s41579-020-00497-1openalex-snapshot

Beyond horizontal gene transfer: the role of plasmids in bacterial evolution

inferredcites →https://doi.org/10.1038/s41598-021-91456-0openalex-snapshot

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

inferredcites →https://doi.org/10.1073/pnas.0908978107openalex-snapshot

Network analyses structure genetic diversity in independent genetic worlds

inferredcites →https://doi.org/10.1073/pnas.1600974113openalex-snapshot

Source–sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities

inferredcites →https://doi.org/10.1073/pnas.2008731118openalex-snapshot

Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes

inferredcites →https://doi.org/10.1093/genetics/162.4.1525openalex-snapshot

Plasmids Spread Very Fast in Heterogeneous Bacterial Communities

inferredcites →https://doi.org/10.1093/molbev/msac115openalex-snapshot

Evolution of Plasmid Mobility: Origin and Fate of Conjugative and Nonconjugative Plasmids

inferredcites →https://doi.org/10.1093/molbev/msaf060openalex-snapshot

The Spread of Antibiotic Resistance Is Driven by Plasmids Among the Fastest Evolving and of Broadest Host Range

inferredcites →https://doi.org/10.1093/molbev/msr292openalex-snapshot

Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks

inferredcites →https://doi.org/10.1093/molbev/msw163openalex-snapshot

Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts

inferredcites →https://doi.org/10.1093/nar/gkac1079openalex-snapshot

Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation

inferredcites →https://doi.org/10.1093/nar/gkad964openalex-snapshot

IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata

inferredcites →https://doi.org/10.1093/nar/gkae1038openalex-snapshot

NCBI RefSeq: reference sequence standards through 25 years of curation and annotation

inferredcites →https://doi.org/10.1093/nar/gkae430openalex-snapshot

Pseudogenes in plasmid genomes reveal past transitions in plasmid mobility

inferredcites →https://doi.org/10.1093/nar/gki177openalex-snapshot

The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells

inferredcites →https://doi.org/10.1093/nar/gkv1189openalex-snapshot

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

inferredcites →https://doi.org/10.1093/nar/gky1080openalex-snapshot

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

inferredcites →https://doi.org/10.1099/mic.0.001214openalex-snapshot

Evolution of horizontal transmission in antimicrobial resistance plasmids

inferredcites →https://doi.org/10.1101/gr.241299.118openalex-snapshot

Plasmid detection and assembly in genomic and metagenomic data sets

inferredcites →https://doi.org/10.1111/j.1574-6976.2012.00337.xopenalex-snapshot

Plasmids foster diversification and adaptation of bacterial populations in soil

inferredcites →https://doi.org/10.1128/cmr.00088-17openalex-snapshot

Mobile Genetic Elements Associated with Antimicrobial Resistance

inferredcites →https://doi.org/10.1128/microbiolspec.mtbp-0016-2017openalex-snapshot

Fitness Costs of Plasmids: a Limit to Plasmid Transmission

inferredcites →https://doi.org/10.1128/mmbr.00015-09openalex-snapshot

Pathogenomics of the Virulence Plasmids of Escherichia coli

inferredcites →https://doi.org/10.1128/mmbr.00020-10openalex-snapshot

Mobility of Plasmids

inferredcites →https://doi.org/10.1139/cjm-2017-0609openalex-snapshot

Plasmid persistence: costs, benefits, and the plasmid paradox

inferredcites →https://doi.org/10.3201/eid0809.020063openalex-snapshot

Biofilms: Microbial Life on Surfaces

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2025.07.24.666492openalex-snapshot

The Rare Plasmid Biosphere: A Hidden Reservoir of Genetic Diversity

inferred← citeshttps://doi.org/10.3390/pathogens14101054openalex-snapshot

Plasmid Genomic Dynamics and One Health: Drivers of Antibiotic Resistance and Pathogenicity

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.