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Nanometer condensate organization in live cells derived from partitioning measurements

https://doi.org/10.1101/2025.02.26.640428

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.bpj.2018.03.011openalex-snapshot

Formation of Chromatin Subcompartments by Phase Separation

inferredcites →https://doi.org/10.1016/j.bpj.2019.08.030openalex-snapshot

Quantifying Dynamics in Phase-Separated Condensates Using Fluorescence Recovery after Photobleaching

inferredcites →https://doi.org/10.1016/j.cell.2015.09.015openalex-snapshot

Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization

inferredcites →https://doi.org/10.1016/j.cell.2016.04.047openalex-snapshot

Coexisting Liquid Phases Underlie Nucleolar Subcompartments

inferredcites →https://doi.org/10.1016/j.cell.2016.06.010openalex-snapshot

Compositional Control of Phase-Separated Cellular Bodies

inferredcites →https://doi.org/10.1016/j.cell.2017.02.027openalex-snapshot

Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response

inferredcites →https://doi.org/10.1016/j.cell.2020.03.050openalex-snapshot

Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization

inferredcites →https://doi.org/10.1016/j.molcel.2020.02.005openalex-snapshot

Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation

inferredcites →https://doi.org/10.1016/j.molcel.2022.04.007openalex-snapshot

Tuning levels of low-complexity domain interactions to modulate endogenous oncogenic transcription

inferredcites →https://doi.org/10.1016/j.molcel.2022.05.018openalex-snapshot

A conceptual framework for understanding phase separation and addressing open questions and challenges

inferredcites →https://doi.org/10.1016/j.molcel.2023.08.006openalex-snapshot

Viscoelasticity and advective flow of RNA underlies nucleolar form and function

inferredcites →https://doi.org/10.1016/j.molcel.2024.12.021openalex-snapshot

Molecular determinants of condensate composition

inferredcites →https://doi.org/10.1016/j.tibs.2020.12.011openalex-snapshot

How Hierarchical Interactions Make Membraneless Organelles Tick Like Clockwork

inferredcites →https://doi.org/10.1021/acs.chemrev.2c00814openalex-snapshot

Phase Transitions of Associative Biomacromolecules

inferredcites →https://doi.org/10.1021/j100496a008openalex-snapshot

Standard thermodynamics of transfer. Uses and misuses

inferredcites →https://doi.org/10.1021/ja00881a009openalex-snapshot

Contribution of Hydrophobic Interactions to the Stability of the Globular Conformation of Proteins

inferredcites →https://doi.org/10.1038/nature10879openalex-snapshot

Phase transitions in the assembly of multivalent signalling proteins

inferredcites →https://doi.org/10.1038/nchem.2803openalex-snapshot

Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles

inferredcites →https://doi.org/10.1038/ncomms11390openalex-snapshot

Involvement of human ribosomal proteins in nucleolar structure and p53-dependent nucleolar stress

inferredcites →https://doi.org/10.1038/ncomms5494openalex-snapshot

Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells

inferredcites →https://doi.org/10.1038/nsb1096-842openalex-snapshot

Experimentally determined hydrophobicity scale for proteins at membrane interfaces

inferredcites →https://doi.org/10.1038/nsb723openalex-snapshot

Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil.

inferredcites →https://doi.org/10.1038/s41467-018-03255-3openalex-snapshot

Self-interaction of NPM1 modulates multiple mechanisms of liquid–liquid phase separation

inferredcites →https://doi.org/10.1038/s41467-024-47602-zopenalex-snapshot

Biomolecular condensates form spatially inhomogeneous network fluids

inferredcites →https://doi.org/10.1038/s41580-020-0272-6openalex-snapshot

The nucleolus as a multiphase liquid condensate

inferredcites →https://doi.org/10.1038/s41586-020-2256-2openalex-snapshot

Composition-dependent thermodynamics of intracellular phase separation

inferredcites →https://doi.org/10.1038/s41586-021-03977-3openalex-snapshot

Whole-cell organelle segmentation in volume electron microscopy

inferredcites →https://doi.org/10.1038/s41586-023-06329-5openalex-snapshot

Extreme dynamics in a biomolecular condensate

inferredcites →https://doi.org/10.1038/s41594-025-01742-yopenalex-snapshot

The filamentous ultrastructure of the PopZ condensate is required for its cellular function

inferredcites →https://doi.org/10.1039/c6nr09736gopenalex-snapshot

The particle in the spider's web: transport through biological hydrogels

inferredcites →https://doi.org/10.1063/1.468327openalex-snapshot

Solvation: Effects of molecular size and shape

inferredcites →https://doi.org/10.1073/pnas.1103979108openalex-snapshot

Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers

inferredcites →https://doi.org/10.1073/pnas.1903870116openalex-snapshot

Controlling the material properties and rRNA processing function of the nucleolus using light

inferredcites →https://doi.org/10.1073/pnas.2000942117openalex-snapshot

mGreenLantern: a bright monomeric fluorescent protein with rapid expression and cell filling properties for neuronal imaging

inferredcites →https://doi.org/10.1073/pnas.2203027119openalex-snapshot

Radius measurement via super-resolution microscopy enables the development of a variable radii proximity labeling platform

inferredcites →https://doi.org/10.1073/pnas.2426449122openalex-snapshot

Quantitative spatial analysis of chromatin biomolecular condensates using cryoelectron tomography

inferredcites →https://doi.org/10.1074/jbc.m110.131367openalex-snapshot

Ribosomal Protein S3, a New Substrate of Akt, Serves as a Signal Mediator between Neuronal Apoptosis and DNA Repair

inferredcites →https://doi.org/10.1091/mbc.e03-06-0363openalex-snapshot

Components of U3 snoRNA-containing Complexes Shuttle between Nuclei and the Cytoplasm and Differentially Localize in Nucleoli: Implications for Assembly and Function

inferredcites →https://doi.org/10.1091/mbc.e05-02-0106openalex-snapshot

A Nonribosomal Landscape in the Nucleolus Revealed by the Stem Cell Protein Nucleostemin

inferredcites →https://doi.org/10.1093/nar/gkac430openalex-snapshot

Additional principles that govern the release of pre-ribosomes from the nucleolus into the nucleoplasm in yeast

inferredcites →https://doi.org/10.1093/oso/9780198520597.001.0001openalex-snapshot

Polymer Physics

inferredcites →https://doi.org/10.1101/cshperspect.a000638openalex-snapshot

The Nucleolus

inferredcites →https://doi.org/10.1101/cshperspect.a041268openalex-snapshot

Nuclear Compartments: An Incomplete Primer to Nuclear Compartments, Bodies, and Genome Organization Relative to Nuclear Architecture

inferredcites →https://doi.org/10.1101/gad.331520.119openalex-snapshot

Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences

inferredcites →https://doi.org/10.1101/gad.348234.121openalex-snapshot

Human nucleoli comprise multiple constrained territories, tethered to individual chromosomes

inferredcites →https://doi.org/10.1101/gad.349748.122openalex-snapshot

The dual nature of the nucleolus

inferredcites →https://doi.org/10.1111/j.1365-2443.2008.01205.xopenalex-snapshot

CANu1, a novel nucleolar protein, accumulated on centromere in response to DNA damage

inferredcites →https://doi.org/10.1126/science.1172046openalex-snapshot

Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation

inferredcites →https://doi.org/10.1126/science.aan5774openalex-snapshot

Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water

inferredcites →https://doi.org/10.1126/science.abb8032openalex-snapshot

Beyond aggregation: Pathological phase transitions in neurodegenerative disease

inferredcites →https://doi.org/10.1126/science.abi6983openalex-snapshot

OpenCell: Endogenous tagging for the cartography of human cellular organization

inferredcites →https://doi.org/10.1146/annurev-biophys-102220-083020openalex-snapshot

Analysis of Tandem Repeat Protein Folding Using Nearest-Neighbor Models

inferredcites →https://doi.org/10.1146/annurev.biophys.28.1.319openalex-snapshot

MEMBRANE PROTEIN FOLDING AND STABILITY: Physical Principles

inferredcites →https://doi.org/10.15252/embj.2021109952openalex-snapshot

On the role of phase separation in the biogenesis of membraneless compartments

inferredcites →https://doi.org/10.7554/elife.47098openalex-snapshot

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation

inferredcites →https://doi.org/10.7554/elife.67176openalex-snapshot

The solubility product extends the buffering concept to heterotypic biomolecular condensates

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-025-64816-xopenalex-snapshot

Of condensates and coats - reciprocal regulation of clathrin assembly and the growth of protein networks

inferred← citeshttps://doi.org/10.1039/d5sm00740bopenalex-snapshot

Biomolecular condensate microstructure is invariant to sequence-encoded molecular and macroscopic properties

inferred← citeshttps://doi.org/10.1063/5.0309619openalex-snapshot

Molecular origins of viscoelasticity in biomolecular condensates

inferred← citeshttps://doi.org/10.1088/1361-6633/ae12a7openalex-snapshot

Physics of droplet regulation in biological cells

inferred← citeshttps://doi.org/10.1101/2025.03.25.645354openalex-snapshot

Biomolecular condensate microstructure couples molecular and mesoscale properties

inferred← citeshttps://doi.org/10.1101/2025.05.13.653742openalex-snapshot

Of condensates and coats - reciprocal regulation of clathrin assembly and the growth of protein networks

inferred← citeshttps://doi.org/10.1101/2025.10.06.680817openalex-snapshot

Biomolecular condensate viscoelasticity is dictated by the interplay between single-molecule shape memory and mesh reconfigurability

inferred← citeshttps://doi.org/10.3389/frbis.2026.1927727openalex-snapshot

Biomolecular condensates, emergent properties, and the mesoscale concept gap

inferred← citeshttps://doi.org/10.64898/2026.05.21.726738openalex-snapshot

Mapping RNA structure assembly and remodeling in biomolecular condensates

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