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Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The Levinthal paradox of the interactome

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Slow formation of aggregation‐resistant β‐sheet folding intermediates

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SANS from homogeneous polymer mixtures: A unified overview

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Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

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Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response

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ATP-Independent Control of Autotransporter Virulence Protein Transport via the Folding Properties of the Secreted Protein

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Early Collapse is not an Obligate Step in Protein Folding

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Mapping the Folding Free Energy Surface for Metal-free Human Cu,Zn Superoxide Dismutase

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Fully Reduced Ribonuclease A Does not Expand at High Denaturant Concentration or Temperature

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Small-Angle X-ray Scattering of Reduced Ribonuclease A: Effects of Solution Conditions and Comparisons with a Computational Model of Unfolded Proteins

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Evidence for Initial Non-specific Polypeptide Chain Collapse During the Refolding of the SH3 Domain of PI3 Kinase

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Time-Resolved Small-Angle X-ray Scattering Study of the Folding Dynamics of Barnase

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Small-Angle X-ray Scattering and Single-Molecule FRET Spectroscopy Produce Highly Divergent Views of the Low-Denaturant Unfolded State

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Microsecond Barrier-Limited Chain Collapse Observed by Time-Resolved FRET and SAXS

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How, when and why proteins collapse: the relation to folding

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Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations

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Relating sequence encoded information to form and function of intrinsically disordered proteins

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The Statistical Conformation of a Highly Flexible Protein: Small-Angle X-Ray Scattering of S. aureus Protein A

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Collapse Precedes Folding in Denaturant-Dependent Assembly of Ubiquitin

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TonB-Dependent Transporter FhuA in Planar Lipid Bilayers: Partial Exit of Its Plug from the Barrel

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Molecular-weight Determination by Light Scattering.

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Slow Unfolded-State Structuring in Acyl-CoA Binding Protein Folding Revealed by Simulation and Experiment

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Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods

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Static scattering function for a polymer chain in a good solvent

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The burst phase in ribonuclease A folding and solvent dependence of the unfolded state

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Chain collapse can occur concomitantly with the rate-limiting step in protein folding.

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Collapse transition in proteins

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Random-coil behavior and the dimensions of chemically unfolded proteins

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Pertactin β-helix folding mechanism suggests common themes for the secretion and folding of autotransporter proteins

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Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy

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Benchmarking all-atom simulations using hydrogen exchange

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Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions

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Prediction of protein antigenic determinants from amino acid sequences.

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PISCES: a protein sequence culling server

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Static-coherent-scattering function for a single polymer chain: Conformational space renormalization of polymers. V

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Fast and accurate algorithms for protein side-chain packing

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Rapid calculation of side chain packing and free energy with applications to protein molecular dynamics

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Protein structural transitions critically transform the network connectivity and viscoelasticity of RNA-binding protein condensates but RNA can prevent it

inferred← citeshttps://doi.org/10.1038/s41467-022-35370-7openalex-snapshot

Condensates formed by prion-like low-complexity domains have small-world network structures and interfaces defined by expanded conformations

inferred← citeshttps://doi.org/10.1038/s41467-024-50647-9openalex-snapshot

Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution

inferred← citeshttps://doi.org/10.1038/s41467-024-51972-9openalex-snapshot

Cation-induced intramolecular coil-to-globule transition in poly(ADP-ribose)

inferred← citeshttps://doi.org/10.1038/s41467-024-53904-zopenalex-snapshot

p14ARF forms meso-scale assemblies upon phase separation with NPM1

inferred← citeshttps://doi.org/10.1038/s41557-021-00840-wopenalex-snapshot

Deciphering how naturally occurring sequence features impact the phase behaviours of disordered prion-like domains

inferred← citeshttps://doi.org/10.1038/s41565-020-00798-9openalex-snapshot

Structural and dynamics analysis of intrinsically disordered proteins by high-speed atomic force microscopy

inferred← citeshttps://doi.org/10.1038/s41573-021-00199-0openalex-snapshot

Advances in targeting ‘undruggable’ transcription factors with small molecules

inferred← citeshttps://doi.org/10.1038/s41580-023-00647-2openalex-snapshot

Mechanisms and pathology of protein misfolding and aggregation

inferred← citeshttps://doi.org/10.1038/s41580-023-00673-0openalex-snapshot

The molecular basis for cellular function of intrinsically disordered protein regions

inferred← citeshttps://doi.org/10.1038/s41586-024-07784-4openalex-snapshot

The ribosome lowers the entropic penalty of protein folding

inferred← citeshttps://doi.org/10.1038/s41586-024-08400-1openalex-snapshot

The sequence–structure–function relationship of intrinsic ERα disorder

inferred← citeshttps://doi.org/10.1038/s41586-026-10141-2openalex-snapshot

Accurate predictions of disordered protein ensembles with STARLING

inferred← citeshttps://doi.org/10.1038/s41586-026-10849-1openalex-snapshot

Rational design of disordered proteins for sequence–function investigation

inferred← citeshttps://doi.org/10.1038/s41592-023-02159-5openalex-snapshot

Direct prediction of intrinsically disordered protein conformational properties from sequence

inferred← citeshttps://doi.org/10.1038/s41592-026-03003-2openalex-snapshot

Toward a unified framework for determining conformational ensembles of disordered proteins

inferred← citeshttps://doi.org/10.1038/s41598-020-58868-wopenalex-snapshot

The Order-Disorder Continuum: Linking Predictions of Protein Structure and Disorder through Molecular Simulation

inferred← citeshttps://doi.org/10.1038/s42003-021-01759-1openalex-snapshot

Full structural ensembles of intrinsically disordered proteins from unbiased molecular dynamics simulations

inferred← citeshttps://doi.org/10.1038/s42003-025-09395-9openalex-snapshot

Parkinson’s disease-specific α-Synuclein variants potentially drive Lewy body formation by engaging in promiscuous and non-functional interactions

inferred← citeshttps://doi.org/10.1039/bk9781839165986-00278openalex-snapshot

Probing Single Chaperone Substrates

inferred← citeshttps://doi.org/10.1039/c7cp04546hopenalex-snapshot

Comment on “Thermal compaction of the intrinsically disordered protein tau: entropic, structural, and hydrophobic factors” by A. Battisti, G. Ciasca, A. Grottesi and A. Tenenbaum, Phys. Chem. Chem. Phys. , 2017, 19 , 8435

inferred← citeshttps://doi.org/10.1039/d4nr03375bopenalex-snapshot

Determination of absolute intramolecular distances in proteins using anomalous X-ray scattering interferometry

inferred← citeshttps://doi.org/10.1063/1.5006954openalex-snapshot

Inferring properties of disordered chains from FRET transfer efficiencies

inferred← citeshttps://doi.org/10.1063/1.5078615openalex-snapshot

The combined force field-sampling problem in simulations of disordered amyloid-β peptides

inferred← citeshttps://doi.org/10.1063/4.0000180openalex-snapshot

Deep mining of the protein energy landscape

inferred← citeshttps://doi.org/10.1063/5.0176306openalex-snapshot

Fine structures of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1063/5.0307183openalex-snapshot

In search of shape in the unshaped: Constructing ensembles of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1073/pnas.1804177115openalex-snapshot

Relation between single-molecule properties and phase behavior of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1073/pnas.1813038116openalex-snapshot

Commonly used FRET fluorophores promote collapse of an otherwise disordered protein

inferred← citeshttps://doi.org/10.1073/pnas.1818206116openalex-snapshot

Unfolded states under folding conditions accommodate sequence-specific conformational preferences with random coil-like dimensions

inferred← citeshttps://doi.org/10.1073/pnas.1904813116openalex-snapshot

Effective concentrations enforced by intrinsically disordered linkers are governed by polymer physics

inferred← citeshttps://doi.org/10.1073/pnas.1907251116openalex-snapshot

Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation

inferred← citeshttps://doi.org/10.1073/pnas.1913442117openalex-snapshot

Protein folding from heterogeneous unfolded state revealed by time-resolved X-ray solution scattering

inferred← citeshttps://doi.org/10.1073/pnas.2003773117openalex-snapshot

Properties of protein unfolded states suggest broad selection for expanded conformational ensembles

inferred← citeshttps://doi.org/10.1073/pnas.2109169119openalex-snapshot

Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein

inferred← citeshttps://doi.org/10.1073/pnas.2111696118openalex-snapshot

Accurate model of liquid–liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties

inferred← citeshttps://doi.org/10.1073/pnas.2220180120openalex-snapshot

Intramolecular structural heterogeneity altered by long-range contacts in an intrinsically disordered protein

inferred← citeshttps://doi.org/10.1073/pnas.2221286120openalex-snapshot

Intrinsic disorder and conformational coexistence in auxin coreceptors

inferred← citeshttps://doi.org/10.1073/pnas.2313835120openalex-snapshot

Glutamine-rich regions of the disordered CREB transactivation domain mediate dynamic intra- and intermolecular interactions

inferred← citeshttps://doi.org/10.1073/pnas.2321606121openalex-snapshot

HDX–MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker

inferred← citeshttps://doi.org/10.1073/pnas.2409139121openalex-snapshot

Molecular insights into the interaction between a disordered protein and a folded RNA

inferred← citeshttps://doi.org/10.1073/pnas.2415220121openalex-snapshot

A genetically encoded anomalous SAXS ruler to probe the dimensions of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1073/pnas.2425999122openalex-snapshot

Identification of an on-pathway intermediate illuminates the kinetic competition between protein folding and misfolding

inferred← citeshttps://doi.org/10.1088/2399-1984/abfb7copenalex-snapshot

Intrinsically disordered proteins at the nano-scale

inferred← citeshttps://doi.org/10.1093/nar/gkab063openalex-snapshot

Interplay of folded domains and the disordered low-complexity domain in mediating hnRNPA1 phase separation

inferred← citeshttps://doi.org/10.1093/pnasnexus/pgae006openalex-snapshot

Dynamic conformational changes of a tardigrade group-3 late embryogenesis abundant protein modulate membrane biophysical properties

inferred← citeshttps://doi.org/10.1093/pnasnexus/pgaf039openalex-snapshot

Intrinsic stiffness and Θ -solvent regime in intrinsically disordered proteins: Implications for liquid–liquid phase separation

inferred← citeshttps://doi.org/10.1093/protein/gzz014openalex-snapshot

Information theoretic measures for quantifying sequence–ensemble relationships of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1098/rsif.2018.0244openalex-snapshot

Lessons from pressure denaturation of proteins

inferred← citeshttps://doi.org/10.1101/2020.02.05.935890openalex-snapshot

Integrating multiple experimental data to determine conformational ensembles of an intrinsically disordered protein

inferred← citeshttps://doi.org/10.1101/2020.06.25.171116openalex-snapshot

Order and disorder – an integrative structure of the full-length human growth hormone receptor

inferred← citeshttps://doi.org/10.1101/2020.07.06.189613openalex-snapshot

Beta turn propensity and a model polymer scaling exponent identify disordered proteins that phase separate

inferred← citeshttps://doi.org/10.1101/2021.03.05.434111openalex-snapshot

RNA modulation of transport properties and stability in phase separated condensates

inferred← citeshttps://doi.org/10.1101/2022.05.21.492916openalex-snapshot

Condensates of disordered proteins have small-world network structures and interfaces defined by expanded conformations

inferred← citeshttps://doi.org/10.1101/2022.06.11.495732openalex-snapshot

Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1101/2022.09.21.508844openalex-snapshot

Sequential Activation and Local Unfolding Control Poly(A)-Binding Protein Condensation

inferred← citeshttps://doi.org/10.1101/2022.10.31.514552openalex-snapshot

Generation of Unfolded Outer Membrane Protein Ensembles Targeted by Hydrodynamic Properties

inferred← citeshttps://doi.org/10.1101/2022.11.14.516525openalex-snapshot

Interpreting transient interactions of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1101/2023.08.06.552128openalex-snapshot

Conserved molecular recognition by an intrinsically disordered region in the absence of sequence conservation

inferred← citeshttps://doi.org/10.1101/2023.10.25.564012openalex-snapshot

Length-dependent Intramolecular Coil-to-Globule Transition in Poly(ADP-ribose) Induced by Cations

inferred← citeshttps://doi.org/10.1101/2023.10.29.564547openalex-snapshot

Rational design of disordered proteins for systematic sequence-to-function investigation

inferred← citeshttps://doi.org/10.1101/2024.02.09.579681openalex-snapshot

Determination of Absolute Intramolecular Distances in Proteins by Anomalous X-ray Scattering Interferometry

inferred← citeshttps://doi.org/10.1101/2025.02.06.636987openalex-snapshot

Nucleotide-specific RNA conformations and dynamics within ribonucleoprotein condensates

inferred← citeshttps://doi.org/10.1101/2025.02.26.640428openalex-snapshot

Nanometer condensate organization in live cells derived from partitioning measurements

inferred← citeshttps://doi.org/10.1101/2025.07.03.663089openalex-snapshot

Hydration free energy is a significant predictor of globular protein incorporation into condensates

inferred← citeshttps://doi.org/10.1101/2025.10.19.683306openalex-snapshot

AF-CALVADOS: AlphaFold-guided simulations of multi-domain proteins at the proteome level

inferred← citeshttps://doi.org/10.1107/s0108767319095916openalex-snapshot

The importance of measuring the solvent quality of unfolded proteins

inferred← citeshttps://doi.org/10.1107/s1600576723011019openalex-snapshot

BioXTAS RAW 2 : new developments for a free open-source program for small-angle scattering data reduction and analysis

inferred← citeshttps://doi.org/10.1126/sciadv.abh3805openalex-snapshot

Order and disorder—An integrative structure of the full-length human growth hormone receptor

inferred← citeshttps://doi.org/10.1126/sciadv.abl6293openalex-snapshot

Protein chain collapse modulation and folding stimulation by GroEL-ES

inferred← citeshttps://doi.org/10.1126/sciadv.adm9926openalex-snapshot

Design of intrinsically disordered protein variants with diverse structural properties

inferred← citeshttps://doi.org/10.1126/science.aar7101openalex-snapshot

Comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”

inferred← citeshttps://doi.org/10.1126/science.aar7949openalex-snapshot

Response to Comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”

inferred← citeshttps://doi.org/10.1126/science.aat0958openalex-snapshot

Response to Comment on “DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification”

inferred← citeshttps://doi.org/10.1126/science.aau8230openalex-snapshot

Comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”

inferred← citeshttps://doi.org/10.1126/science.aaw8653openalex-snapshot

Valence and patterning of aromatic residues determine the phase behavior of prion-like domains

inferred← citeshttps://doi.org/10.1126/science.adq8381openalex-snapshot

Sequence-based prediction of intermolecular interactions driven by disordered regions

inferred← citeshttps://doi.org/10.1140/epje/s10189-023-00360-0openalex-snapshot

Pincus blob elasticity in an intrinsically disordered protein

inferred← citeshttps://doi.org/10.1140/epje/s10189-023-00383-7openalex-snapshot

Electrostatics and hydrophobicity in the dynamics of intrinsically disordered proteins

inferred← citeshttps://doi.org/10.1140/epje/s10189-024-00409-8openalex-snapshot

From isolated polyelectrolytes to star-like assemblies: the role of sequence heterogeneity on the statistical structure of the intrinsically disordered neurofilament-low tail domain

inferred← citeshttps://doi.org/10.1146/annurev-biophys-070317-032838openalex-snapshot

Collapse Transitions of Proteins and the Interplay Among Backbone, Sidechain, and Solvent Interactions

inferred← citeshttps://doi.org/10.1146/annurev-biophys-080124-123012openalex-snapshot

Collapse and Protein Folding: Should We Be Surprised That Biothermodynamics Works So Well?

inferred← citeshttps://doi.org/10.1146/annurev-biophys-120221-095357openalex-snapshot

Rules of Physical Mathematics Govern Intrinsically Disordered Proteins

inferred← citeshttps://doi.org/10.1146/annurev-physchem-071819-113553openalex-snapshot

Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties

inferred← citeshttps://doi.org/10.11606/d.43.2020.tde-24032020-120700openalex-snapshot

Determinação da estrutura e do estado oligomérico de proteínas chaperonas por espalhamento de raios-x a baixos ângulos (SAXS)

inferred← citeshttps://doi.org/10.1186/s43556-022-00075-2openalex-snapshot

Post-translational modifications in liquid-liquid phase separation: a comprehensive review

inferred← citeshttps://doi.org/10.13070/mm.en.9.2794openalex-snapshot

Biological Condensates

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