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De novo identification of the specificities of recurrent human T cell receptors

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Reverse ELISPOT assay for clonal analysis of cytokine production I. Enumeration of gamma-interferon-secreting cells
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Detection of intracellular cytokines by flow cytometry
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Deconstructing the Peptide-MHC Specificity of T Cell Recognition
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Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts
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Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing
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Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma
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T-Scan: A Genome-wide Method for the Systematic Discovery of T Cell Epitopes
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A single-cell atlas reveals immune heterogeneity in anti-PD-1-treated non-small cell lung cancer
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HLA-A∗02:01 restricted T cell receptors against the highly conserved SARS-CoV-2 polymerase cross-react with human coronaviruses
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T-cell epitope discovery technologies
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Confronting Complexity: Real-World Immunodominance in Antiviral CD8+ T Cell Responses
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Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
inferredcites →https://doi.org/10.1016/j.immuni.2021.04.006openalex-snapshot
CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope cross-react with selective seasonal coronaviruses
inferredcites →https://doi.org/10.1016/j.xcrm.2022.100697openalex-snapshot
Resolving SARS-CoV-2 CD4+ T cell specificity via reverse epitope discovery
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A panel of MHC class I restricted viral peptides for use as a quality control for vaccine trial ELISPOT assays
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Afamitresgene autoleucel for advanced synovial sarcoma and myxoid round cell liposarcoma (SPEARHEAD-1): an international, open-label, phase 2 trial
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Quantifiable predictive features define epitope-specific T cell receptor repertoires
inferredcites →https://doi.org/10.1038/nature22976openalex-snapshot
Identifying specificity groups in the T cell receptor repertoire
inferredcites →https://doi.org/10.1038/ng.3822openalex-snapshot
Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
inferredcites →https://doi.org/10.1038/s41467-022-34581-2openalex-snapshot
Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients
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Applications of cell therapy in the treatment of virus-associated cancers
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Pre-existing immunity to SARS-CoV-2: the knowns and unknowns
inferredcites →https://doi.org/10.1038/s41586-018-0130-2openalex-snapshot
Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates
inferredcites →https://doi.org/10.1038/s41586-020-2550-zopenalex-snapshot
SARS-CoV-2-specific T cell immunity in cases of COVID-19 and SARS, and uninfected controls
inferredcites →https://doi.org/10.1038/s41586-022-04494-7openalex-snapshot
A genome-scale screen for synthetic drivers of T cell proliferation
inferredcites →https://doi.org/10.1038/s41586-023-06431-8openalex-snapshot
Mapping the T cell repertoire to a complex gut bacterial community
inferredcites →https://doi.org/10.1038/s41586-023-06916-6openalex-snapshot
Autoreactive T cells target peripheral nerves in Guillain–Barré syndrome
inferredcites →https://doi.org/10.1038/s41586-024-07018-7openalex-snapshot
Naturally occurring T cell mutations enhance engineered T cell therapies
inferredcites →https://doi.org/10.1038/s41587-024-02210-6openalex-snapshot
Discovery of tumor-reactive T cell receptors by massively parallel library synthesis and screening
inferredcites →https://doi.org/10.1038/s41587-024-02248-6openalex-snapshot
High-throughput discovery of MHC class I- and II-restricted T cell epitopes using synthetic cellular circuits
inferredcites →https://doi.org/10.1038/s41590-019-0320-6openalex-snapshot
Human CD8+ T cell cross-reactivity across influenza A, B and C viruses
inferredcites →https://doi.org/10.1038/s41591-018-0045-3openalex-snapshot
Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing
inferredcites →https://doi.org/10.1038/s41592-020-0867-zopenalex-snapshot
T cell antigen discovery
inferredcites →https://doi.org/10.1038/s43018-021-00292-8openalex-snapshot
Temporal single-cell tracing reveals clonal revival and expansion of precursor exhausted T cells during anti-PD-1 therapy in lung cancer
inferredcites →https://doi.org/10.1056/nejmoa1801540openalex-snapshot
Allogeneic BK Virus–Specific T Cells for Progressive Multifocal Leukoencephalopathy
inferredcites →https://doi.org/10.1056/nejmoa2103485openalex-snapshot
Overall Survival Benefit with Tebentafusp in Metastatic Uveal Melanoma
inferredcites →https://doi.org/10.1073/pnas.1810927115openalex-snapshot
Influenza hemagglutinin membrane anchor
inferredcites →https://doi.org/10.1073/pnas.2315857121openalex-snapshot
Expanded T lymphocytes in the cerebrospinal fluid of multiple sclerosis patients are specific for Epstein-Barr-virus-infected B cells
inferredcites →https://doi.org/10.1084/jem.20220650openalex-snapshot
Broader Epstein–Barr virus–specific T cell receptor repertoire in patients with multiple sclerosis
inferredcites →https://doi.org/10.1093/cid/ciac353openalex-snapshot
Clinical Validation of a Novel T-Cell Receptor Sequencing Assay for Identification of Recent or Prior Severe Acute Respiratory Syndrome Coronavirus 2 Infection
inferredcites →https://doi.org/10.1093/nar/gkaa379openalex-snapshot
NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
inferredcites →https://doi.org/10.1093/nar/gkae1010openalex-snapshot
UniProt: the Universal Protein Knowledgebase in 2025
inferredcites →https://doi.org/10.1093/nar/gky1006openalex-snapshot
The Immune Epitope Database (IEDB): 2018 update
inferredcites →https://doi.org/10.1093/nar/gkz874openalex-snapshot
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
inferredcites →https://doi.org/10.1101/2025.04.28.651095openalex-snapshot
A functionally validated TCR-pMHC database for TCR specificity model development
inferredcites →https://doi.org/10.1126/sciadv.adm8951openalex-snapshot
Simultaneous analysis of pMHC binding and reactivity unveils virus-specific CD8 T cell immunity to a concise epitope set
inferredcites →https://doi.org/10.1126/science.274.5284.94openalex-snapshot
Phenotypic Analysis of Antigen-Specific T Lymphocytes
inferredcites →https://doi.org/10.1126/science.abj8222openalex-snapshot
Longitudinal analysis reveals high prevalence of Epstein-Barr virus associated with multiple sclerosis
inferredcites →https://doi.org/10.1126/science.abl5447openalex-snapshot
Molecular signatures of antitumor neoantigen-reactive T cells from metastatic human cancers
inferredcites →https://doi.org/10.1126/sciimmunol.abf4001openalex-snapshot
Antigen identification for HLA class I– and HLA class II–restricted T cell receptors using cytokine-capturing antigen-presenting cells
inferredcites →https://doi.org/10.1126/sciimmunol.aeb4684openalex-snapshot
Identification and characterization of dietary antigens in oral tolerance
inferredcites →https://doi.org/10.1126/scitranslmed.aag3187openalex-snapshot
Improved cancer immunotherapy by a CD25-mimobody conferring selectivity to human interleukin-2
inferredcites →https://doi.org/10.1128/cvi.00278-10openalex-snapshot
Prevalence of Antibodies to Four Human Coronaviruses Is Lower in Nasal Secretions than in Serum
inferredcites →https://doi.org/10.1128/jvi.00578-15openalex-snapshot
High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive Recombination
inferredcites →https://doi.org/10.1172/jci.insight.150070openalex-snapshot
T cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity
inferredcites →https://doi.org/10.1182/blood-2006-05-023069openalex-snapshot
Facilitating matched pairing and expression of TCR chains introduced into human T cells
inferredcites →https://doi.org/10.21417/re2022jciopenalex-snapshot
T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity
inferredcites →https://doi.org/10.4049/jimmunol.1202466openalex-snapshot
CD8+ TCR Repertoire Formation Is Guided Primarily by the Peptide Component of the Antigenic Complex
inferredcites →https://doi.org/10.4049/jimmunol.181.3.2124openalex-snapshot
Naive Precursor Frequencies and MHC Binding Rather Than the Degree of Epitope Diversity Shape CD8+ T Cell Immunodominance
inferredcites →https://doi.org/10.7554/elife.38358openalex-snapshot
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
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