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Environmental DNA Metabarcoding of Invertebrate-Incubated Water Supports Wfd-Compliant and Animal-Friendly Bioassessment with Added Trait Insights

https://doi.org/10.1101/2025.08.12.669652

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Warm temperature and alkaline conditions accelerate environmental RNA degradation

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Evaluation of primer pairs for eDNA‐based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region

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Capture—Incubate—Release: An Animal‐Friendly Approach to Assess Local Aquatic Macroinvertebrate Species Diversity Through Environmental DNA Metabarcoding

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The Development of a System to Assess the Ecological Quality of Streams Based on Macroinvertebrates – Design of the Sampling Programme within the AQEM Project

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Environmental DNA time series analysis of a temperate stream reveals distinct seasonal community and functional shifts

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ggplot2

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Larger particle size distribution of environmental RNA compared to environmental DNA: a case study targeting the mitochondrial cytochrome b gene in zebrafish (Danio rerio) using experimental aquariums

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Comparison of 16S rRNA and 16S rDNA T-RFLP Approaches to Study Bacterial Communities in Soil Microcosms Treated with Chromate as Perturbing Agent

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Macrophyte beds contribute disproportionately to benthic invertebrate abundance and biomass in a sand plains stream

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Potenzial genetischer Methoden für das Biomonitoring der Wasserrahmenrichtlinie

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The macroinvertebrate faunas of riffles and pools

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www.freshwaterecology.info – An online tool that unifies, standardises and codifies more than 20,000 European freshwater organisms and their ecological preferences

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Stream water quality assessment by metabarcoding of invertebrates

inferredcites →https://doi.org/10.1016/j.limno.2017.11.001openalex-snapshot

How to facilitate freshwater macroinvertebrate reintroduction?

inferredcites →https://doi.org/10.1016/j.limno.2019.125726openalex-snapshot

Active reintroduction of benthic invertebrates to increase stream biodiversity

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Intercalibrating classifications of ecological status: Europe's quest for common management objectives for aquatic ecosystems

inferredcites →https://doi.org/10.1016/j.scitotenv.2019.135314openalex-snapshot

Release and degradation of environmental DNA and RNA in a marine system

inferredcites →https://doi.org/10.1016/j.scitotenv.2021.150587openalex-snapshot

Assessment of benthic invertebrate diversity and river ecological status along an urbanized gradient using environmental DNA metabarcoding and a traditional survey method

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Taxonomic accuracy and complementarity between bulk and eDNA metabarcoding provides an alternative to morphology for biological assessment of freshwater macroinvertebrates

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Can Environmental RNA Revolutionize Biodiversity Science?

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Environmental RNA: A Revolution in Ecological Resolution?

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Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive

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Fit for purpose? Evaluating benthic invertebrate DNA metabarcoding for ecological status class assessment in streams under the Water Framework Directive

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Assessing streams in Germany with benthic invertebrates: development of a practical standardised protocol for macroinvertebrate sampling and sorting

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Typology of streams in Germany based on benthic invertebrates: Ecoregions, zonation, geology and substrate

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Effect of streambed sediment on benthic ecology

inferredcites →https://doi.org/10.1021/acs.est.8b03869openalex-snapshot

Application of Environmental DNA Metabarcoding for Predicting Anthropogenic Pollution in Rivers

inferredcites →https://doi.org/10.1021/acs.est.8b06829openalex-snapshot

Stream Transport and Retention of Environmental DNA Pulse Releases in Relation to Hydrogeomorphic Scaling Factors

inferredcites →https://doi.org/10.1023/b:hydr.0000025255.70009.a5openalex-snapshot

Overview and application of the AQEM assessment system

inferredcites →https://doi.org/10.1038/ncomms12544openalex-snapshot

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

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Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

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Environmental (e)RNA advances the reliability of eDNA by predicting its age

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Assessing benthic macroinvertebrate communities’ spatial heterogeneity in Mediterranean transitional waters through eDNA metabarcoding

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Filter-Feeding Insects

inferredcites →https://doi.org/10.1038/srep46294openalex-snapshot

Seasonal variation in environmental DNA in relation to population size and environmental factors

inferredcites →https://doi.org/10.1093/bioinformatics/btac588openalex-snapshot

APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA metabarcoding data

inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot

Biological identifications through DNA barcodes

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Comparison of environmental DNA and bulk‐sample metabarcoding using highly degenerate cytochrome c oxidase I primers

inferredcites →https://doi.org/10.1111/1755-0998.13358openalex-snapshot

TaxonTableTools: A comprehensive, platform‐independent graphical user interface software to explore and visualise DNA metabarcoding data

inferredcites →https://doi.org/10.1111/2041-210x.12789openalex-snapshot

Assessing strengths and weaknesses of DNA metabarcoding‐based macroinvertebrate identification for routine stream monitoring

inferredcites →https://doi.org/10.1111/fwb.12397openalex-snapshot

Recolonisation patterns of benthic invertebrates: a field investigation of restored former sewage channels

inferredcites →https://doi.org/10.1111/fwb.13840openalex-snapshot

Tackling inconsistencies among freshwater invertebrate trait databases: harmonising across continents and aggregating taxonomic resolution

inferredcites →https://doi.org/10.1111/j.1365-2427.1982.tb00650.xopenalex-snapshot

Comparison of benthic macroinvertebrate fauna and substratum composition in riffles and pools in the impounded River Elan and the unregulated River Wye, mid‐Wales

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05470.xopenalex-snapshot

Towards next‐generation biodiversity assessment using DNA metabarcoding

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05542.xopenalex-snapshot

Environmental DNA

inferredcites →https://doi.org/10.1111/j.1600-0706.2010.18334.xopenalex-snapshot

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The future of fish‐based ecological assessment of European rivers: from traditional EU Water Framework Directive compliant methods to eDNA metabarcoding‐based approaches

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Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

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Environmental DNA metabarcoding of lake fish communities reflects long‐term data from established survey methods

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Assessment of stream macroinvertebrate communities with eDNA is not congruent with tissue‐based metabarcoding

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Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers and strategies of data filtering

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Contributions of source populations, habitat suitability and trait overlap to benthic invertebrate community assembly in restored urban streams

inferredcites →https://doi.org/10.1371/journal.pone.0005653openalex-snapshot

Rapid Recovery of Damaged Ecosystems

inferredcites →https://doi.org/10.1371/journal.pone.0088786openalex-snapshot

Transport Distance of Invertebrate Environmental DNA in a Natural River

inferredcites →https://doi.org/10.1371/journal.pone.0225409openalex-snapshot

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

inferredcites →https://doi.org/10.1371/journal.pone.0257510openalex-snapshot

Environmental DNA gives comparable results to morphology-based indices of macroinvertebrates in a large-scale ecological assessment

inferredcites →https://doi.org/10.17504/protocols.io.36wgqj45xvk5/v2openalex-snapshot

PCR cleanup and size selection with magnetic beads v2

inferredcites →https://doi.org/10.17504/protocols.io.eq2ly73mmlx9/v1openalex-snapshot

Guanidine-based DNA extraction with silica-coated beads or silica spin columns v1

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Co-extraction of RNA and DNA from plant tissue v1

inferredcites →https://doi.org/10.17504/protocols.io.q26g7y859gwz/v2openalex-snapshot

PCR normalization and size selection with magnetic beads v2

inferredcites →https://doi.org/10.1899/09-183.1openalex-snapshot

First audit of macroinvertebrate samples from an EU Water Framework Directive monitoring program: human error greatly lowers precision of assessment results

inferredcites →https://doi.org/10.2307/2963459openalex-snapshot

Species Assemblages and Indicator Species: The Need for a Flexible Asymmetrical Approach

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3389/fphys.2020.588313openalex-snapshot

High Throughput Sequencing of MicroRNA in Rainbow Trout Plasma, Mucus, and Surrounding Water Following Acute Stress

inferredcites →https://doi.org/10.3897/mbmg.4.53535openalex-snapshot

BOLDigger – a Python package to identify and organise sequences with the Barcode of Life Data systems

inferredcites →https://doi.org/10.3897/mbmg.5.66557openalex-snapshot

Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species

inferredcites →https://doi.org/10.3897/mbmg.5.67533openalex-snapshot

Wet grinding of invertebrate bulk samples – a scalable and cost-efficient protocol for metabarcoding and metagenomics

inferredcites →https://doi.org/10.4081/jlimnol.2016.1373openalex-snapshot

Combining taxonomy and function in the study of stream macroinvertebrates

inferredcites →https://doi.org/10.7287/peerj.preprints.3037v2openalex-snapshot

Short COI markers for freshwater macroinvertebrate metabarcoding

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Is it worth the extra mile? Comparing environmental DNA and RNA metabarcoding for vertebrate and invertebrate biodiversity surveys in a lowland stream

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

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