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Warm temperature and alkaline conditions accelerate environmental RNA degradation

https://doi.org/10.1002/edn3.334
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.7382openalex-snapshot
Meta‐analysis shows that environmental DNA outperforms traditional surveys, but warrants better reporting standards
inferredcites →https://doi.org/10.1002/edn3.141openalex-snapshot
Environmental DNA shedding and decay rates from diverse animal forms and thermal regimes
inferredcites →https://doi.org/10.1002/edn3.164openalex-snapshot
The need for robust qPCR‐based eDNA detection assays in environmental monitoring and species inventories
inferredcites →https://doi.org/10.1002/edn3.169openalex-snapshot
Messenger RNA typing of environmental RNA (eRNA): A case study on zebrafish tank water with perspectives for the future development of eRNA analysis on aquatic vertebrates
inferredcites →https://doi.org/10.1002/edn3.253openalex-snapshot
Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes
inferredcites →https://doi.org/10.1002/edn3.51openalex-snapshot
Estimating shedding and decay rates of environmental nuclear DNA with relation to water temperature and biomass
inferredcites →https://doi.org/10.1007/bf00216384openalex-snapshot
Cloning of the ?2-microglobulin gene in the zebrafish
inferredcites →https://doi.org/10.1007/s10201-016-0508-5openalex-snapshot
A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant
inferredcites →https://doi.org/10.1007/s10750-018-3750-5openalex-snapshot
Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds
inferredcites →https://doi.org/10.1016/0005-2728(93)90197-nopenalex-snapshot
Mitochondrial cytochrome b: evolution and structure of the protein
inferredcites →https://doi.org/10.1016/0006-3002(61)91028-9openalex-snapshot
The thermal degradation of nucleic acids
inferredcites →https://doi.org/10.1016/0092-8674(93)80043-eopenalex-snapshot
Messenger RNA degradation in eukaryotes
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.017openalex-snapshot
Fish environmental DNA is more concentrated in aquatic sediments than surface water
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.038openalex-snapshot
Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms
inferredcites →https://doi.org/10.1016/j.cell.2017.12.022openalex-snapshot
Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons
inferredcites →https://doi.org/10.1016/j.ecolind.2015.11.022openalex-snapshot
The use of environmental DNA of fishes as an efficient method of determining habitat connectivity
inferredcites →https://doi.org/10.1016/j.ecolind.2021.107796openalex-snapshot
Fish environmental RNA enables precise ecological surveys with high positive predictivity
inferredcites →https://doi.org/10.1016/j.envres.2011.02.001openalex-snapshot
From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments
inferredcites →https://doi.org/10.1016/j.fishres.2017.09.013openalex-snapshot
Freshwater fisheries assessment using environmental DNA: A primer on the method, its potential, and shortcomings as a conservation tool
inferredcites →https://doi.org/10.1016/j.marpolbul.2015.08.022openalex-snapshot
Accurate assessment of the impact of salmon farming on benthic sediment enrichment using foraminiferal metabarcoding
inferredcites →https://doi.org/10.1016/j.scitotenv.2019.135314openalex-snapshot
Release and degradation of environmental DNA and RNA in a marine system
inferredcites →https://doi.org/10.1016/j.tree.2019.05.003openalex-snapshot
Can Environmental RNA Revolutionize Biodiversity Science?
inferredcites →https://doi.org/10.1016/j.tree.2021.03.001openalex-snapshot
Environmental RNA: A Revolution in Ecological Resolution?
inferredcites →https://doi.org/10.1016/s1385-299x(01)00119-2openalex-snapshot
High stability of mRNAs postmortem and protocols for their assessment by RT-PCR
inferredcites →https://doi.org/10.1021/acs.est.5b05672openalex-snapshot
Effects of Temperature and Trophic State on Degradation of Environmental DNA in Lake Water
inferredcites →https://doi.org/10.1021/cr960425xopenalex-snapshot
Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases
inferredcites →https://doi.org/10.1021/ja990592popenalex-snapshot
Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl Group
inferredcites →https://doi.org/10.1038/260500a0openalex-snapshot
Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene
inferredcites →https://doi.org/10.1038/35012251openalex-snapshot
Systematic conservation planning
inferredcites →https://doi.org/10.1038/nrmicro2549openalex-snapshot
Molecular aspects of bacterial pH sensing and homeostasis
inferredcites →https://doi.org/10.1038/s41598-021-82205-4openalex-snapshot
Environmental (e)RNA advances the reliability of eDNA by predicting its age
inferredcites →https://doi.org/10.1038/s42003-017-0005-3openalex-snapshot
Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms
inferredcites →https://doi.org/10.1071/mf09068openalex-snapshot
Observational methods used in marine spatial monitoring of fishes and associated habitats: a review
inferredcites →https://doi.org/10.1073/pnas.0400522101openalex-snapshot
Temperature dependence of metabolic rates for microbial growth, maintenance, and survival
inferredcites →https://doi.org/10.1093/bioinformatics/bts091openalex-snapshot
Unipro UGENE: a unified bioinformatics toolkit
inferredcites →https://doi.org/10.1093/nar/20.14.3791openalex-snapshot
Solubilzation in formamide protects RNA from degradation
inferredcites →https://doi.org/10.1111/1365-2664.12392openalex-snapshot
A basin‐scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan
inferredcites →https://doi.org/10.1111/1755-0998.12685openalex-snapshot
Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA
inferredcites →https://doi.org/10.1111/1755-0998.12900openalex-snapshot
Unlocking biodiversity and conservation studies in high‐diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes
inferredcites →https://doi.org/10.1111/1755-0998.13354openalex-snapshot
Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses
inferredcites →https://doi.org/10.1111/faf.12286openalex-snapshot
The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries
inferredcites →https://doi.org/10.1111/j.1574-695x.2010.00736.xopenalex-snapshot
Characterizing the effects of inorganic acid and alkaline shock on theStaphylococcus aureustranscriptome and messenger RNA turnover
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/mec.15643openalex-snapshot
Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring
inferredcites →https://doi.org/10.1111/mec.15942openalex-snapshot
Trade‐offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on “Environmental DNA: What's behind the term?” by Pawlowski et al., (2020)
inferredcites →https://doi.org/10.1126/science.1059199openalex-snapshot
Historical Overfishing and the Recent Collapse of Coastal Ecosystems
inferredcites →https://doi.org/10.1128/jb.00305-09openalex-snapshot
Acid Resistance inMycobacterium tuberculosis
inferredcites →https://doi.org/10.1163/157075407779766750openalex-snapshot
Evaluation of seven aquatic sampling methods for amphibians and other aquatic fauna
inferredcites →https://doi.org/10.1186/1471-2199-9-102openalex-snapshot
Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment
inferredcites →https://doi.org/10.1186/1472-6750-6-33openalex-snapshot
Routes to improving the reliability of low level DNA analysis using real-time PCR
inferredcites →https://doi.org/10.1210/me.2014-1256openalex-snapshot
Genetic Analysis of Zebrafish Gonadotropin (FSH and LH) Functions by TALEN-Mediated Gene Disruption
inferredcites →https://doi.org/10.1242/jeb.203.12.1817openalex-snapshot
TISSUE-SPECIFIC EXPRESSION OF ZEBRAFISH (DANIO RERIO) HEAT SHOCK FACTOR 1 mRNAS IN RESPONSE TO HEAT STRESS
inferredcites →https://doi.org/10.1371/journal.pone.0041732openalex-snapshot
Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
inferredcites →https://doi.org/10.1371/journal.pone.0114639openalex-snapshot
The Release Rate of Environmental DNA from Juvenile and Adult Fish
inferredcites →https://doi.org/10.1371/journal.pone.0162277openalex-snapshot
Potential of Environmental DNA to Evaluate Northern Pike (Esox lucius) Eradication Efforts: An Experimental Test and Case Study
inferredcites →https://doi.org/10.1371/journal.pone.0231718openalex-snapshot
Comparing the efficiency of open and enclosed filtration systems in environmental DNA quantification for fish and jellyfish
inferredcites →https://doi.org/10.18637/jss.v082.i13openalex-snapshot
lmerTest Package: Tests in Linear Mixed Effects Models
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fevo.2021.632973openalex-snapshot
The Application of PMA (Propidium Monoazide) to Different Target Sequence Lengths of Zebrafish eDNA: A New Approach Aimed Toward Improving Environmental DNA Ecology and Biological Surveillance
inferredcites →https://doi.org/10.3391/mbi.2017.8.3.08openalex-snapshot
Experimental observations on the decay of environmental DNA from bighead and silver carps
inferredcites →https://doi.org/10.7717/peerj.3347openalex-snapshot
Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/mbmg.9.148923zenodo-depositor-declared
Comparison of three strategies for local bioassessments in streams using environmental DNA and RNA metabarcoding of macroinvertebrates
inferred← citeshttps://doi.org/10.1002/aqc.70083openalex-snapshot
Comparing eDNA and eRNA Sampling Methodologies From Pond Environments
inferred← citeshttps://doi.org/10.1002/ece3.72986openalex-snapshot
Pattern of Detections Across Multiple Environmental Messenger RNAs (e‐ mRNAs ) in Stressor‐Exposed Zebrafish ( Danio rerio )
inferred← citeshttps://doi.org/10.1002/ece3.74311openalex-snapshot
Biomonitoring 3.0: Beyond Taxa Lists to Evidence‐Tiered Monitoring of Ecosystem Dynamics and Interactions
inferred← citeshttps://doi.org/10.1002/edn3.394openalex-snapshot
Environmental DNA of Antarctic krill (Euphausia superba): Measuring DNA fragmentation adds a temporal aspect to quantitative surveys
inferred← citeshttps://doi.org/10.1002/edn3.405openalex-snapshot
Harnessing decay rates for coastal marine biosecurity applications: A review of environmental DNA and RNA fate
inferred← citeshttps://doi.org/10.1002/edn3.437openalex-snapshot
Assessing the degradation of environmental DNA and RNA based on genomic origin in a metabarcoding context
inferred← citeshttps://doi.org/10.1002/edn3.476openalex-snapshot
Environmental DNA and RNA in aquatic community ecology: Toward methodological standardization
inferred← citeshttps://doi.org/10.1002/edn3.531openalex-snapshot
Environmental DNA–RNA dynamics provide insights for effective monitoring of marine invasive species
inferred← citeshttps://doi.org/10.1002/edn3.532openalex-snapshot
Relative gene expression analysis of catalase in environmental RNA from Japanese medaka exposed to toxic chemicals
inferred← citeshttps://doi.org/10.1002/edn3.70016openalex-snapshot
Sample Preservation Solution Increases Nucleic Acid Yield and Environmental RNA Quality in Sediments Across an Estuarine Salinity Gradient
inferred← citeshttps://doi.org/10.1002/edn3.70052openalex-snapshot
Assessment of Allometry in Environmental DNA and RNA Production From Ayu (Plecoglossus altivelis) in an Experimental Condition Using Mitochondrial and Nuclear Gene Markers
inferred← citeshttps://doi.org/10.1002/edn3.70128openalex-snapshot
Release and Degradation of Environmental DNA and RNA From Eels in Aotearoa New Zealand
inferred← citeshttps://doi.org/10.1002/edn3.70137openalex-snapshot
Comprehensive Sequencing of Environmental RNA From Japanese Medaka at Various Size Fractions and Comparison With Skin Swab RNA
inferred← citeshttps://doi.org/10.1002/edn3.70200openalex-snapshot
Application of Environmental DNA ‐Based Assessment for Upstream–Downstream Comparison of River Macroinvertebrates in a Metal‐Contaminated River
inferred← citeshttps://doi.org/10.1002/edn3.70266openalex-snapshot
Contaminant‐Driven Modulation of Environmental DNA and RNA in Aquatic Systems
inferred← citeshttps://doi.org/10.1002/edn3.70267openalex-snapshot
Primer Length in Reverse Transcription Determines Biodiversity Recovery and Reproducibility in eRNA Metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.70272openalex-snapshot
Design, Validation, and Implementation Considerations for Species‐Targeted Environmental RNA Assays to Detect Presence and Physiological State
inferred← citeshttps://doi.org/10.1002/wrna.1876openalex-snapshot
The Definition of RNA Age Related to RNA Sequence Changes
inferred← citeshttps://doi.org/10.1007/978-3-031-66822-7_13openalex-snapshot
Environmental Nucleic Acids: A Toolkit for Monitoring Diversity, Conservation, and Environmental/Population Health
inferred← citeshttps://doi.org/10.1007/s00114-022-01808-7openalex-snapshot
Can nuclear aquatic environmental DNA be a genetic marker for the accurate estimation of species abundance?
inferred← citeshttps://doi.org/10.1007/s00114-024-01904-wopenalex-snapshot
Larger particle size distribution of environmental RNA compared to environmental DNA: a case study targeting the mitochondrial cytochrome b gene in zebrafish (Danio rerio) using experimental aquariums
inferred← citeshttps://doi.org/10.1007/s10126-026-10618-1openalex-snapshot
Environmental Exosomes/Small Extracellular Vesicles: Evidence of Extracellular RNA Release by Aquatic Organisms
inferred← citeshttps://doi.org/10.1007/s10142-023-01269-9openalex-snapshot
Validating post-enrichment steps in environmental RNA analysis for improving its availability from water samples
inferred← citeshttps://doi.org/10.1007/s10653-026-03522-zopenalex-snapshot
Bentonite seepage-control layers mitigate the transport of antibiotics and antibiotic resistance genes during reclaimed water infiltration
inferred← citeshttps://doi.org/10.1007/s10661-024-12535-zopenalex-snapshot
Comparative evaluation for the performance of environmental DNA and RNA analyses targeting mitochondrial and nuclear genes from ayu (Plecoglossus altivelis)
inferred← citeshttps://doi.org/10.1007/s44211-023-00382-wopenalex-snapshot
Methodological considerations for aqueous environmental RNA collection, preservation, and extraction
inferred← citeshttps://doi.org/10.1016/j.aqrep.2024.102562openalex-snapshot
Implementing an environmental DNA/RNA-based approach to non-invasively investigate disease caused by Ichthyophthirius multifiliis
inferred← citeshttps://doi.org/10.1016/j.ecolind.2025.114328openalex-snapshot
Environmental RNA as a transformative tool for aquatic ecosystem health assessment: progress and challenges
inferred← citeshttps://doi.org/10.1016/j.jes.2025.11.019openalex-snapshot
Influence of short-term water sample storage on environmental RNA metabarcoding-based biodiversity assessment
inferred← citeshttps://doi.org/10.1016/j.limno.2026.126322openalex-snapshot
Environmental DNA metabarcoding of invertebrate-incubated water enables WFD-compliant, animal-friendly bioassessment with additional trait insights
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2024.117422openalex-snapshot
Environmental DNA/RNA metabarcoding for noninvasive and comprehensive monitoring and assessment of marine fishes
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2026.120301openalex-snapshot
Transcriptional biomarkers of microplastic exposure in fish: a tissue-resolved scoping review
inferred← citeshttps://doi.org/10.1016/j.watbs.2026.100593openalex-snapshot
Toward understanding diel changes in environmental DNA detection and quantification patterns in relation to organismal behaviors: A literature review and case study
inferred← citeshttps://doi.org/10.1021/acs.est.3c03737openalex-snapshot
Environmental RNA as a Noninvasive Tool for Assessing Toxic Effects in Fish: A Proof-of-concept Study Using Japanese Medaka Exposed to Pyrene
inferred← citeshttps://doi.org/10.1021/acsestwater.2c00542openalex-snapshot
Environmental Nucleic Acid Pollution: Characterization of Wastewater Generating False Positives in Molecular Ecological Surveys
inferred← citeshttps://doi.org/10.1038/s41598-025-12916-5openalex-snapshot
Differential decay of multiple environmental nucleic acid components
inferred← citeshttps://doi.org/10.1038/s41598-026-58421-1openalex-snapshot
Automated eDNA and eRNA profiling for biodiversity monitoring in marine and freshwater ecosystems
inferred← citeshttps://doi.org/10.1038/s44185-024-00042-wopenalex-snapshot
Utilizing environmental DNA and imaging to study the deep-sea fish community of Takuyo-Daigo Seamount
inferred← citeshttps://doi.org/10.1080/15476286.2025.2486281openalex-snapshot
Release and degradation of dissolved environmental RNAs from zebrafish cells
inferred← citeshttps://doi.org/10.1098/rspb.2023.0979openalex-snapshot
Utilizing the state of environmental DNA (eDNA) to incorporate time-scale information into eDNA analysis
inferred← citeshttps://doi.org/10.1101/2024.09.23.614187openalex-snapshot
Comprehensive Sequencing of Environmental RNA from Japanese Medaka at Various Size Fractions and Comparison with Skin RNA
inferred← citeshttps://doi.org/10.1101/2025.08.12.669652openalex-snapshot
Environmental DNA Metabarcoding of Invertebrate-Incubated Water Supports Wfd-Compliant and Animal-Friendly Bioassessment with Added Trait Insights
inferred← citeshttps://doi.org/10.1101/2025.11.04.686478openalex-snapshot
Environmental exosomes: Evidence of extracellular RNA release by aquatic organisms
inferred← citeshttps://doi.org/10.1111/1755-0998.13857openalex-snapshot
Environmental RNA can distinguish life stages in amphibian populations
inferred← citeshttps://doi.org/10.1111/1755-0998.14092openalex-snapshot
Selecting Competent Reverse Transcription Strategies to Maximise Biodiversity Recovery With eRNA Metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.70028openalex-snapshot
Comparative Decay Dynamics and Detectability of eDNA and eRNA in Connected and Isolated Freshwater Mesocosms Using Digital PCR
inferred← citeshttps://doi.org/10.1111/1755-0998.70101openalex-snapshot
pH ‐Dependent Degradation of Macrobial Environmental DNA in Water
inferred← citeshttps://doi.org/10.1111/2041-210x.14369openalex-snapshot
Rapid, easy, sensitive, low‐cost and on‐site detection of environmental DNA and RNA using CRISPR ‐Cas13
inferred← citeshttps://doi.org/10.1111/2041-210x.70410openalex-snapshot
Enhanced fish detection sensitivity in aquatic systems using environmental RNA
inferred← citeshttps://doi.org/10.1111/gbi.12572openalex-snapshot
White and green rust chimneys accumulate RNA in a ferruginous chemical garden
inferred← citeshttps://doi.org/10.1111/icad.12843openalex-snapshot
Towards DNA metabarcoding‐based haplotype for monitoring terrestrial arthropod communities
inferred← citeshttps://doi.org/10.1111/jfb.70484openalex-snapshot
Prospects of multipurpose biomonitoring for fisheries assessment based on environmental nucleic acids
inferred← citeshttps://doi.org/10.1111/mec.17152openalex-snapshot
Environmental transcriptomics under heat stress: Can environmental RNA reveal changes in gene expression of aquatic organisms?
inferred← citeshttps://doi.org/10.1111/mec.17787openalex-snapshot
The Promise of Environmental RNA Research Beyond mRNA
inferred← citeshttps://doi.org/10.1111/mec.70419openalex-snapshot
eRNA Reveals Real‐Time Signals of Freshwater Fish Population Biomass and Total Abundance
inferred← citeshttps://doi.org/10.1177/15311074251382157openalex-snapshot
Planning Considerations Related to Contamination Control for the Return and Analysis of Martian Samples
inferred← citeshttps://doi.org/10.1201/9781003363873-7openalex-snapshot
Advancing and Integrating ‘Biomonitoring 2.0' with New Molecular Tools for Marine Biodiversity and Ecosystem Assessments
inferred← citeshttps://doi.org/10.13039/501100002241openalex-snapshot
Highly Biaxially Strained Silicene on Au(111)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2170577/v1openalex-snapshot
Simple and efficient preservation of fish environmental RNA in filtered water samples via RNAlater
inferred← citeshttps://doi.org/10.2965/jwet.25-003openalex-snapshot
Detection of Functional Environmental RNA (eRNA) Genes from Macro-organisms: Implications from Re-analysis of Non-laboratory Metatranscriptome Studies
inferred← citeshttps://doi.org/10.2989/1814232x.2024.2425709openalex-snapshot
Sustainable seafood: advances in traceability, assessment, monitoring and resource management
inferred← citeshttps://doi.org/10.3389/finsc.2026.1770055openalex-snapshot
Enhancing the delivery and stability of lipid nanoparticle–dsRNA formulations in the RNAi-recalcitrant fall armyworm (Spodoptera frugiperda)
inferred← citeshttps://doi.org/10.3390/bios14100465openalex-snapshot
Advances in Genotyping Detection of Fragmented Nucleic Acids
inferred← citeshttps://doi.org/10.3390/environments13050281openalex-snapshot
Wanted Dead or Alive: Enhancing Spatiotemporal Resolution of Environmental Nucleic Acid Techniques in Macro-Organism Biosecurity
inferred← citeshttps://doi.org/10.3390/gels10040242openalex-snapshot
Quantitative Analysis of Genomic DNA Degradation of E. coli Using Automated Gel Electrophoresis under Various Levels of Microwave Exposure
inferred← citeshttps://doi.org/10.3390/su15129497openalex-snapshot
Detection and Management of Freshwater Invasive Alien Species through Environmental DNA Analysis and Geographic Information Systems: A Review
inferred← citeshttps://doi.org/10.64898/2026.01.19.699857openalex-snapshot
Environmental RNA Improves Detection and Surveillance of Schistosomiasis Transmission
inferred← citeshttps://doi.org/10.7717/peerj.18016openalex-snapshot
Is it worth the extra mile? Comparing environmental DNA and RNA metabarcoding for vertebrate and invertebrate biodiversity surveys in a lowland stream
inferred← citeshttps://doi.org/10.7717/peerj.20166openalex-snapshot
Detection of terrestrial mammals using environmental DNA during heavy rainfall events and associated influencing factors
inferred← citeshttps://doi.org/10.7717/peerj.21612openalex-snapshot
From rivers to the sea: a single gene assay for New Zealand freshwater eel eDNA monitoring
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