On the public citation graph

An unusual nucleosomal sequence pattern is enriched in mammalian genes

https://doi.org/10.1101/207167

0 signed · 76 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bip.10317openalex-snapshot

Structure and dynamics of nucleosomal DNA

inferredcites →https://doi.org/10.1002/jcb.240550110openalex-snapshot

Nucleosome positioning and gene regulation

inferredcites →https://doi.org/10.1002/prot.10441openalex-snapshot

Characterization of sequence variability in nucleosome core histone folds

inferredcites →https://doi.org/10.1006/jmbi.1996.0503openalex-snapshot

Nucleosome DNA Sequence Pattern Revealed by Multiple Alignment of Experimentally Mapped Sequences

inferredcites →https://doi.org/10.1006/jmbi.1996.0592openalex-snapshot

Naturally Occurring Nucleosome Positioning Signals in Human Exons and Introns

inferredcites →https://doi.org/10.1006/jmbi.1997.1464openalex-snapshot

Positioning and stability of nucleosomes on MMTV 3′LTR sequences

inferredcites →https://doi.org/10.1006/jmbi.1997.1494openalex-snapshot

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

inferredcites →https://doi.org/10.1006/jmbi.1998.2087openalex-snapshot

Differential nucleosome positioning on Xenopus oocyte and somatic 5 s RNA genes determines both TFIIIA and H1 binding: a mechanism for selective H1 repression 1 1Edited by J. Karn

inferredcites →https://doi.org/10.1007/978-3-642-02008-7_31openalex-snapshot

On the Relationship between DNA Periodicity and Local Chromatin Structure

inferredcites →https://doi.org/10.1016/0014-5793(83)80598-5openalex-snapshot

Specific alignment of nucleosomes on DNA correlates with periodic distribution of purine—pyrimidine and pyrimidine—purine dimers

inferredcites →https://doi.org/10.1016/0022-2836(85)90396-1openalex-snapshot

DNA bending and its relation to nucleosome positioning

inferredcites →https://doi.org/10.1016/0022-2836(86)90036-7openalex-snapshot

Principles of sequence-dependent flexure of DNA

inferredcites →https://doi.org/10.1016/0022-2836(86)90452-3openalex-snapshot

Sequence periodicities in chicken nucleosome core DNA

inferredcites →https://doi.org/10.1016/j.cell.2015.02.001openalex-snapshot

Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local Flexibility

inferredcites →https://doi.org/10.1016/j.cell.2015.03.017openalex-snapshot

Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming

inferredcites →https://doi.org/10.1016/j.cell.2016.10.049openalex-snapshot

Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping

inferredcites →https://doi.org/10.1016/j.devcel.2014.05.023openalex-snapshot

Uniformity of Nucleosome Preservation Pattern in Mammalian Sperm and Its Connection to Repetitive DNA Elements

inferredcites →https://doi.org/10.1016/j.molcel.2005.05.003openalex-snapshot

Intrinsic Histone-DNA Interactions and Low Nucleosome Density Are Important for Preferential Accessibility of Promoter Regions in Yeast

inferredcites →https://doi.org/10.1016/s0021-9258(19)36553-6openalex-snapshot

Nucleosome interactions with a human Alu element. Transcriptional repression and effects of template methylation.

inferredcites →https://doi.org/10.1016/s0022-2836(02)00386-8openalex-snapshot

Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9Å Resolution

inferredcites →https://doi.org/10.1016/s0959-437x(00)00058-7openalex-snapshot

The HP1 protein family: getting a grip on chromatin

inferredcites →https://doi.org/10.1016/s1672-0229(11)60001-6openalex-snapshot

Thirty Years of Multiple Sequence Codes

inferredcites →https://doi.org/10.1038/35040083openalex-snapshot

Nuclear compartmentalization and gene activity

inferredcites →https://doi.org/10.1038/38444openalex-snapshot

Crystal structure of the nucleosome core particle at 2.8 Å resolution

inferredcites →https://doi.org/10.1038/nature01262openalex-snapshot

Initial sequencing and comparative analysis of the mouse genome

inferredcites →https://doi.org/10.1038/nature08473openalex-snapshot

The role of DNA shape in protein–DNA recognition

inferredcites →https://doi.org/10.1038/nature10002openalex-snapshot

Determinants of nucleosome organization in primary human cells

inferredcites →https://doi.org/10.1038/nature11142openalex-snapshot

A map of nucleosome positions in yeast at base-pair resolution

inferredcites →https://doi.org/10.1038/ng.600openalex-snapshot

Transposable elements have rewired the core regulatory network of human embryonic stem cells

inferredcites →https://doi.org/10.1038/nrg2008openalex-snapshot

Heterochromatin revisited

inferredcites →https://doi.org/10.1038/nrg3117openalex-snapshot

Repetitive DNA and next-generation sequencing: computational challenges and solutions

inferredcites →https://doi.org/10.1038/nsmb.1526openalex-snapshot

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

inferredcites →https://doi.org/10.1038/nsmb.2506openalex-snapshot

Determinants of nucleosome positioning

inferredcites →https://doi.org/10.1038/s41467-018-06236-8openalex-snapshot

Caenorhabditis elegans sperm carry a histone-based epigenetic memory of both spermatogenesis and oogenesis

inferredcites →https://doi.org/10.1038/sj.emboj.7600433openalex-snapshot

Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

inferredcites →https://doi.org/10.1073/pnas.1105680108openalex-snapshot

p53 binding to nucleosomes within the p21 promoter in vivo leads to nucleosome loss and transcriptional activation

inferredcites →https://doi.org/10.1073/pnas.1315809110openalex-snapshot

Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning

inferredcites →https://doi.org/10.1073/pnas.1508371112openalex-snapshot

Structural analysis of nucleosomal barrier to transcription

inferredcites →https://doi.org/10.1073/pnas.93.4.1370openalex-snapshot

Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals.

inferredcites →https://doi.org/10.1074/jbc.270.17.10091openalex-snapshot

Nucleosome Positioning by Human Alu Elements in Chromatin

inferredcites →https://doi.org/10.1074/jbc.m109.081182openalex-snapshot

p53 Binding to Nucleosomal DNA Depends on the Rotational Positioning of DNA Response Element

inferredcites →https://doi.org/10.1080/073911010010524947openalex-snapshot

Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioningin vitro

inferredcites →https://doi.org/10.1080/07391102.1988.10506485openalex-snapshot

DNA Sequence Patterns in Precisely Positioned Nucleosomes

inferredcites →https://doi.org/10.1080/07391102.1992.10507982openalex-snapshot

Preferred Positions of AA and TT Dinucleotides in Aligned Nucleosomal DNA Sequences

inferredcites →https://doi.org/10.1080/07391102.2006.10507097openalex-snapshot

Sequence Structure of Human Nucleosome DNA

inferredcites →https://doi.org/10.1080/07391102.2010.10508586openalex-snapshot

Sequence-dependent Kink-and-Slide Deformations of Nucleosomal DNA Facilitated by Histone Arginines Bound in the Minor Groove

inferredcites →https://doi.org/10.1080/07391102.2010.10508587openalex-snapshot

Electrostatic Interactions between Arginines and the Minor Groove in the Nucleosome

inferredcites →https://doi.org/10.1080/15384101.2017.1361064openalex-snapshot

p53 binding sites in normal and cancer cells are characterized by distinct chromatin context

inferredcites →https://doi.org/10.1093/genetics/106.1.45openalex-snapshot

AN ANALYSIS OF REGIONAL CONSTRAINTS ON EXCHANGE IN DROSOPHILA MELANOGASTER USING RECOMBINATION-DEFECTIVE MEIOTIC MUTANTS

inferredcites →https://doi.org/10.1093/nar/11.11.3833openalex-snapshot

Nucleotide sequence-directed mapping of the nucleosomes

inferredcites →https://doi.org/10.1093/nar/9.12.2643openalex-snapshot

Sequence specific cleavage of DNA by micrococcal nuclease

inferredcites →https://doi.org/10.1093/nar/9.12.2659openalex-snapshot

High sequence specificity of micrococcal nuclease

inferredcites →https://doi.org/10.1093/nar/9.8.1963openalex-snapshot

Periodicity in DNA primary structure is defined by secondary structure of the coded protein

inferredcites →https://doi.org/10.1093/nar/gkp113openalex-snapshot

Distinctive sequence patterns in metazoan and yeast nucleosomes: Implications for linker histone binding to AT-rich and methylated DNA

inferredcites →https://doi.org/10.1093/nar/gks870openalex-snapshot

Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing

inferredcites →https://doi.org/10.1093/nar/gkt943openalex-snapshot

Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest

inferredcites →https://doi.org/10.1093/nar/gkv978openalex-snapshot

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster

inferredcites →https://doi.org/10.1093/nar/gkw068openalex-snapshot

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

inferredcites →https://doi.org/10.1101/gr.078261.108openalex-snapshot

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

inferredcites →https://doi.org/10.1101/gr.084830.108openalex-snapshot

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

inferredcites →https://doi.org/10.1101/gr.116228.110openalex-snapshot

Variety of genomic DNA patterns for nucleosome positioning

inferredcites →https://doi.org/10.1101/gr.177014.114openalex-snapshot

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

inferredcites →https://doi.org/10.1126/science.1112178openalex-snapshot

Genome-Scale Identification of Nucleosome Positions in S. cerevisiae

inferredcites →https://doi.org/10.1128/mcb.22.21.7524-7534.2002openalex-snapshot

High-Resolution Mapping of Changes in Histone-DNA Contacts of Nucleosomes Remodeled by ISW2

inferredcites →https://doi.org/10.1128/mcb.24.23.10111-10117.2004openalex-snapshot

Evidence for Eviction and Rapid Deposition of Histones upon Transcriptional Elongation by RNA Polymerase II

inferredcites →https://doi.org/10.1186/1471-2105-15-313openalex-snapshot

Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy

inferredcites →https://doi.org/10.1186/1471-2164-11-309openalex-snapshot

Effects of Alu elements on global nucleosome positioning in the human genome

inferredcites →https://doi.org/10.1186/1745-6150-6-2openalex-snapshot

Impact of Alu repeats on the evolution of human p53 binding sites

inferredcites →https://doi.org/10.1186/gb-2009-10-10-r109openalex-snapshot

A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genomes

inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

inferredcites →https://doi.org/10.1186/s13059-018-1398-0openalex-snapshot

Precise genome-wide mapping of single nucleosomes and linkers in vivo

inferredcites →https://doi.org/10.1371/journal.pbio.0060065openalex-snapshot

Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

inferredcites →https://doi.org/10.1371/journal.pcbi.1000175openalex-snapshot

Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1371/journal.pgen.1003036openalex-snapshot

Controls of Nucleosome Positioning in the Human Genome

inferredcites →https://doi.org/10.1371/journal.pgen.1003504openalex-snapshot

The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements

inferredcites →https://doi.org/10.1534/g3.112.003640openalex-snapshot

Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.