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The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2010.05.020openalex-snapshot
Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons
inferredcites →https://doi.org/10.1016/j.cell.2011.11.058openalex-snapshot
Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
inferredcites →https://doi.org/10.1016/j.tig.2003.08.004openalex-snapshot
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
inferredcites →https://doi.org/10.1016/j.virol.2010.12.007openalex-snapshot
Dynamic control of endogenous retroviruses during development
inferredcites →https://doi.org/10.1016/s0167-4781(02)00400-1openalex-snapshot
Pronapsin A and B gene expression in normal and malignant human lung and mononuclear blood cells
inferredcites →https://doi.org/10.1038/284601a0openalex-snapshot
Selfish genes, the phenotype paradigm and genome evolution
inferredcites →https://doi.org/10.1038/nature01262openalex-snapshot
Initial sequencing and comparative analysis of the mouse genome
inferredcites →https://doi.org/10.1038/nature05874openalex-snapshot
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
inferredcites →https://doi.org/10.1038/nature08248openalex-snapshot
L1 retrotransposition in human neural progenitor cells
inferredcites →https://doi.org/10.1038/nature09906openalex-snapshot
Mapping and analysis of chromatin state dynamics in nine human cell types
inferredcites →https://doi.org/10.1038/nature10531openalex-snapshot
Somatic retrotransposition alters the genetic landscape of the human brain
inferredcites →https://doi.org/10.1038/nature10808openalex-snapshot
DNase I sensitivity QTLs are a major determinant of human expression variation
inferredcites →https://doi.org/10.1038/nature11212openalex-snapshot
An expansive human regulatory lexicon encoded in transcription factor footprints
inferredcites →https://doi.org/10.1038/nature11232openalex-snapshot
The accessible chromatin landscape of the human genome
inferredcites →https://doi.org/10.1038/nature11244openalex-snapshot
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/ng.2553openalex-snapshot
Endogenous retroviruses function as species-specific enhancer elements in the placenta
inferredcites →https://doi.org/10.1038/ng.368openalex-snapshot
The regulated retrotransposon transcriptome of mammalian cells
inferredcites →https://doi.org/10.1038/ng.600openalex-snapshot
Transposable elements have rewired the core regulatory network of human embryonic stem cells
inferredcites →https://doi.org/10.1038/ng.917openalex-snapshot
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
inferredcites →https://doi.org/10.1038/nm.2129openalex-snapshot
Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
inferredcites →https://doi.org/10.1038/nmeth888openalex-snapshot
DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
inferredcites →https://doi.org/10.1038/nmeth890openalex-snapshot
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
inferredcites →https://doi.org/10.1038/nrg2337openalex-snapshot
Transposable elements and the evolution of regulatory networks
inferredcites →https://doi.org/10.1038/nrg3199openalex-snapshot
Endogenous viruses: insights into viral evolution and impact on host biology
inferredcites →https://doi.org/10.1073/pnas.0511238103openalex-snapshot
A large family of ancient repeat elements in the human genome is under strong selection
inferredcites →https://doi.org/10.1073/pnas.0703637104openalex-snapshot
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/molbev/msg050openalex-snapshot
Estimation of Divergence Times for Major Lineages of Primate Species
inferredcites →https://doi.org/10.1093/nar/gkh012openalex-snapshot
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
inferredcites →https://doi.org/10.1093/nar/gkj143openalex-snapshot
TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes
inferredcites →https://doi.org/10.1093/nar/gkn425openalex-snapshot
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
inferredcites →https://doi.org/10.1093/nar/gkq992openalex-snapshot
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
inferredcites →https://doi.org/10.1101/gr.080663.108openalex-snapshot
Evolution of the mammalian transcription factor binding repertoire via transposable elements
inferredcites →https://doi.org/10.1101/gr.106419.110openalex-snapshot
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
inferredcites →https://doi.org/10.1101/gr.139105.112openalex-snapshot
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
inferredcites →https://doi.org/10.1101/gr.5255506openalex-snapshot
Functional noncoding sequences derived from SINEs in the mammalian genome
inferredcites →https://doi.org/10.1126/science.1198374openalex-snapshot
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
inferredcites →https://doi.org/10.1126/science.1202702openalex-snapshot
Three Periods of Regulatory Innovation During Vertebrate Evolution
inferredcites →https://doi.org/10.1126/science.15739260openalex-snapshot
The Significance of Responses of the Genome to Challenge
inferredcites →https://doi.org/10.1126/science.451548openalex-snapshot
Regulation of Gene Expression: Possible Role of Repetitive Sequences
inferredcites →https://doi.org/10.1159/000084965openalex-snapshot
Transposable elements donate lineage-specific regulatory sequences to host genomes
inferredcites →https://doi.org/10.1186/1471-2164-13-400openalex-snapshot
The role of Transposable Elements in shaping the combinatorial interaction of Transcription Factors
inferredcites →https://doi.org/10.1186/1745-6150-1-20openalex-snapshot
Transposable element derived DNaseI-hypersensitive sites in the human genome.
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2012-13-11-r107openalex-snapshot
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
inferredcites →https://doi.org/10.1371/journal.pcbi.0030137openalex-snapshot
Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation
inferredcites →https://doi.org/10.4049/jimmunol.169.10.5638openalex-snapshot
Dendritic Cell-Associated Lectin-1: A Novel Dendritic Cell-Associated, C-Type Lectin-Like Molecule Enhances T Cell Secretion of IL-4
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Role of Chromosomal Reorganisations in the Human–Chimpanzee Speciation
inferred← citeshttps://doi.org/10.1002/advs.202523333openalex-snapshot
Deciphering the Evolution Pattern of Structural Variations Overlapped With Repetitive Sequence During Cattle Evolution
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Histone turnover and chromatin accessibility: Critical mediators of neurological development, plasticity, and disease
inferred← citeshttps://doi.org/10.1002/bies.201700091openalex-snapshot
The Genes of Life and Death: A Potential Role for Placental‐Specific Genes in Cancer
inferred← citeshttps://doi.org/10.1002/bies.202400059openalex-snapshot
Transposable elements as drivers of dedifferentiation: Connections between enhancers in embryonic stem cells, placenta, and cancer
inferred← citeshttps://doi.org/10.1002/cpz1.206openalex-snapshot
RepExpress: A Novel Pipeline for the Quantification and Characterization of Transposable Element Expression from RNA‐seq Data
inferred← citeshttps://doi.org/10.1002/humu.23608openalex-snapshot
LINE- andAlu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV
inferred← citeshttps://doi.org/10.1007/978-1-4939-3372-3_3openalex-snapshot
In Silico Methods to Identify Exapted Transposable Element Families
inferred← citeshttps://doi.org/10.1007/978-1-4939-3372-3_7openalex-snapshot
RNA-Seq Analysis to Measure the Expression of SINE Retroelements
inferred← citeshttps://doi.org/10.1007/978-3-031-59286-7_13openalex-snapshot
Transposons as Environmental Stress Detectors, Are Eukaryotic Genomes Evolved to Evolve?
inferred← citeshttps://doi.org/10.1007/978-3-032-04125-8_1openalex-snapshot
Transposable Elements and Genome Evolution in Vertebrates
inferred← citeshttps://doi.org/10.1007/978-3-032-04125-8_8openalex-snapshot
The Impact of Transposable Elements on Immune Pathways
inferred← citeshttps://doi.org/10.1007/978-3-032-24295-2_5openalex-snapshot
Transposons, Stress, and the Evolution of Adaptability
inferred← citeshttps://doi.org/10.1007/978-3-319-48344-3_5openalex-snapshot
Neuronal Genome Plasticity: Retrotransposons, Environment and Disease
inferred← citeshttps://doi.org/10.1007/978-3-319-48344-3_8openalex-snapshot
Retrotransposon-Derived Regulatory Regions and Transcripts in Stemness
inferred← citeshttps://doi.org/10.1007/978-3-319-48838-7_38openalex-snapshot
Structural and Functional Coevolution of Human Endogenous Retroviruses with Our Genome
inferred← citeshttps://doi.org/10.1007/978-3-319-61664-3_7openalex-snapshot
Analysis of Transposable Elements Expressed in the Gonads of the Siberian Sturgeon
inferred← citeshttps://doi.org/10.1007/s00018-014-1672-6openalex-snapshot
Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function
inferred← citeshttps://doi.org/10.1007/s00018-015-1947-6openalex-snapshot
Molecular functions of human endogenous retroviruses in health and disease
inferred← citeshttps://doi.org/10.1007/s00018-015-1990-3openalex-snapshot
The role of Alu elements in the cis-regulation of RNA processing
inferred← citeshttps://doi.org/10.1007/s00018-019-03421-wopenalex-snapshot
Epigenetics in age-related macular degeneration: new discoveries and future perspectives
inferred← citeshttps://doi.org/10.1007/s00018-024-05195-2openalex-snapshot
Regulation and function of transposable elements in cancer genomes
inferred← citeshttps://doi.org/10.1007/s00239-025-10285-1openalex-snapshot
Transposable Elements Seed Transcription Factor Binding Sites to Sequence-Specific Double-Stranded DNA Binding TF Networks Contributing to Governance of Primate Brain Evolution
inferred← citeshttps://doi.org/10.1007/s00239-026-10344-1openalex-snapshot
Regulatory Evolution and the Genetic Basis of Human Brain Expansion
inferred← citeshttps://doi.org/10.1007/s00335-026-10228-1openalex-snapshot
Genomic-microbial coevolution in human development: chromosome 2 fusion, and human accelerated regions
inferred← citeshttps://doi.org/10.1007/s00429-021-02306-8openalex-snapshot
Leftovers of viruses in human physiology
inferred← citeshttps://doi.org/10.1007/s00439-016-1655-9openalex-snapshot
Pathogenetics of alveolar capillary dysplasia with misalignment of pulmonary veins
inferred← citeshttps://doi.org/10.1007/s10577-015-9493-5openalex-snapshot
Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates
inferred← citeshttps://doi.org/10.1007/s10709-021-00130-wopenalex-snapshot
Transposable elements expression in Rhinella marina (cane toad) specimens submitted to immune and stress challenge
inferred← citeshttps://doi.org/10.1007/s11427-018-9447-8openalex-snapshot
Exaptation at the molecular genetic level
inferred← citeshttps://doi.org/10.1007/s12250-021-00372-0openalex-snapshot
Human Endogenous Retrovirus Type W Envelope from Multiple Sclerosis Demyelinating Lesions Shows Unique Solubility and Antigenic Characteristics
inferred← citeshttps://doi.org/10.1007/s13258-024-01550-6openalex-snapshot
Transposable elements contribute to tissue-specific gene regulation in humans
inferred← citeshttps://doi.org/10.1007/s13311-014-0302-1openalex-snapshot
Epigenetic Mechanisms Underlying the Pathogenesis of Neurogenetic Diseases
inferred← citeshttps://doi.org/10.1016/b978-0-12-814085-7.00007-6openalex-snapshot
Roles and regulation of endogenous retroviruses in pluripotency and early development
inferred← citeshttps://doi.org/10.1016/b978-0-12-820071-1.00005-0openalex-snapshot
Aging-induced stem cell dysfunction: Molecular mechanisms and potential therapeutic avenues
inferred← citeshttps://doi.org/10.1016/b978-0-323-91909-8.00035-9openalex-snapshot
Transposable Elements Shaping the Epigenome
inferred← citeshttps://doi.org/10.1016/j.arr.2019.100995openalex-snapshot
The role of transposable elements activity in aging and their possible involvement in laminopathic diseases
inferred← citeshttps://doi.org/10.1016/j.bbcan.2026.189574openalex-snapshot
Endogenous retroviruses in development, immunity, and disease: From regulatory roles to therapeutic opportunities
inferred← citeshttps://doi.org/10.1016/j.biosystems.2022.104669openalex-snapshot
What we have learned about evolutionary genome change in the past 7 decades
inferred← citeshttps://doi.org/10.1016/j.cell.2015.01.006openalex-snapshot
Enhancer Evolution across 20 Mammalian Species
inferred← citeshttps://doi.org/10.1016/j.cell.2016.09.018openalex-snapshot
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
inferred← citeshttps://doi.org/10.1016/j.cell.2018.03.081openalex-snapshot
Co-optation of Tandem DNA Repeats for the Maintenance of Mesenchymal Identity
inferred← citeshttps://doi.org/10.1016/j.copbio.2015.02.001openalex-snapshot
How do regulatory networks evolve and expand throughout evolution?
inferred← citeshttps://doi.org/10.1016/j.coviro.2017.07.001openalex-snapshot
How to tame an endogenous retrovirus: HERVH and the evolution of human pluripotency
inferred← citeshttps://doi.org/10.1016/j.crmeth.2024.100911openalex-snapshot
Single chromatin fiber profiling and nucleosome position mapping in the human brain
inferred← citeshttps://doi.org/10.1016/j.devcel.2014.05.023openalex-snapshot
Uniformity of Nucleosome Preservation Pattern in Mammalian Sperm and Its Connection to Repetitive DNA Elements
inferred← citeshttps://doi.org/10.1016/j.ebiom.2019.01.063openalex-snapshot
Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma
inferred← citeshttps://doi.org/10.1016/j.fsi.2026.111373openalex-snapshot
λ-carrageenan-induced inflammation modulates transposable element expression in skin and brain of gilthead seabream (Sparus aurata)
inferred← citeshttps://doi.org/10.1016/j.gde.2014.08.007openalex-snapshot
The role of gene regulatory factors in the evolutionary history of humans
inferred← citeshttps://doi.org/10.1016/j.gde.2018.02.006openalex-snapshot
Transposable element activity, genome regulation and human health
inferred← citeshttps://doi.org/10.1016/j.gene.2014.06.048openalex-snapshot
Genomic environment and digital expression of bovine endogenous retroviruses
inferred← citeshttps://doi.org/10.1016/j.gene.2018.06.077openalex-snapshot
Evidence for positive selection on recent human transposable element insertions
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146799openalex-snapshot
Characterisation of retrotransposon insertion polymorphisms in whole genome sequencing data from individuals with amyotrophic lateral sclerosis
inferred← citeshttps://doi.org/10.1016/j.gpb.2022.05.005openalex-snapshot
Dynamic DNA 5-Hydroxylmethylcytosine and RNA 5-Methycytosine Reprogramming During Early Human Development
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2024.136224openalex-snapshot
Retrotransposon involves in photoperiodic spermatogenesis in Brandt's voles (Lasiopodomys brandtii) by co-transcription with flagellar genes
inferred← citeshttps://doi.org/10.1016/j.isci.2025.112049openalex-snapshot
Multi-omics analysis reveals critical cis-regulatory roles of transposable elements in livestock genomes
inferred← citeshttps://doi.org/10.1016/j.jad.2025.120198openalex-snapshot
Transposable elements are dysregulated in brains of individuals with major depressive disorder
inferred← citeshttps://doi.org/10.1016/j.jbc.2023.105130openalex-snapshot
Deep annotation of long noncoding RNAs by assembling RNA-seq and small RNA-seq data
inferred← citeshttps://doi.org/10.1016/j.jgg.2021.02.007openalex-snapshot
A single-cell atlas of mouse olfactory bulb chromatin accessibility
inferred← citeshttps://doi.org/10.1016/j.jia.2022.08.128openalex-snapshot
A 314-bp SINE insertion in the ZNF2 promoter region may act as a repressor related to regulation of fat deposition in pigs
inferred← citeshttps://doi.org/10.1016/j.molcel.2016.03.029openalex-snapshot
Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
inferred← citeshttps://doi.org/10.1016/j.neubiorev.2021.03.019openalex-snapshot
The “missing heritability”—Problem in psychiatry: Is the interaction of genetics, epigenetics and transposable elements a potential solution?
inferred← citeshttps://doi.org/10.1016/j.neuron.2021.08.005openalex-snapshot
Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.175358openalex-snapshot
Positive selection in cilia-related genes may facilitate deep-sea adaptation of Thermocollonia jamsteci
inferred← citeshttps://doi.org/10.1016/j.scr.2019.101456openalex-snapshot
The evolution of Great Apes has shaped the functional enhancers' landscape in human embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.semcdb.2016.05.004openalex-snapshot
Massive contribution of transposable elements to mammalian regulatory sequences
inferred← citeshttps://doi.org/10.1016/j.stem.2015.01.005openalex-snapshot
Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells
inferred← citeshttps://doi.org/10.1016/j.stemcr.2021.03.021openalex-snapshot
Non-human primates as a model for human development
inferred← citeshttps://doi.org/10.1016/j.tig.2021.07.007openalex-snapshot
The essential but enigmatic regulatory role of HERVH in pluripotency
inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100294openalex-snapshot
Genome graphs detect human polymorphisms in active epigenomic state during influenza infection
inferred← citeshttps://doi.org/10.1016/j.xgen.2026.101165openalex-snapshot
Comparative genomics reveals LINE-1 recombination with diverse RNAs
inferred← citeshttps://doi.org/10.1016/j.xplc.2021.100270openalex-snapshot
Exploring transposable element-based markers to identify allelic variations underlying agronomic traits in rice
inferred← citeshttps://doi.org/10.1016/j.ygeno.2017.11.002openalex-snapshot
RTFAdb: A database of computationally predicted associations between retrotransposons and transcription factors in the human and mouse genomes
inferred← citeshttps://doi.org/10.1016/j.ygeno.2019.06.003openalex-snapshot
Insight into the epigenetic landscape of a currently endogenizing gammaretrovirus in mule deer (Odocoileus hemionus)
inferred← citeshttps://doi.org/10.1038/nature13992openalex-snapshot
A comparative encyclopedia of DNA elements in the mouse genome
inferred← citeshttps://doi.org/10.1038/ncomms7644openalex-snapshot
A family of transposable elements co-opted into developmental enhancers in the mouse neocortex
inferred← citeshttps://doi.org/10.1038/nrg.2016.139openalex-snapshot
Regulatory activities of transposable elements: from conflicts to benefits
inferred← citeshttps://doi.org/10.1038/nrg3481openalex-snapshot
Evolution of transcription factor binding in metazoans — mechanisms and functional implications
inferred← citeshttps://doi.org/10.1038/nsmb.2799openalex-snapshot
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
inferred← citeshttps://doi.org/10.1038/s41467-018-08006-yopenalex-snapshot
Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.1038/s41467-019-11957-5openalex-snapshot
Functional disease architectures reveal unique biological role of transposable elements
inferred← citeshttps://doi.org/10.1038/s41467-019-13555-xopenalex-snapshot
The epigenomic landscape of transposable elements across normal human development and anatomy
inferred← citeshttps://doi.org/10.1038/s41467-020-17206-4openalex-snapshot
Endogenous retroviruses are a source of enhancers with oncogenic potential in acute myeloid leukaemia
inferred← citeshttps://doi.org/10.1038/s41467-020-19603-1openalex-snapshot
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals
inferred← citeshttps://doi.org/10.1038/s41467-021-23397-1openalex-snapshot
Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures
inferred← citeshttps://doi.org/10.1038/s41467-021-26288-7openalex-snapshot
Morc3 silences endogenous retroviruses by enabling Daxx-mediated histone H3.3 incorporation
inferred← citeshttps://doi.org/10.1038/s41467-022-31197-4openalex-snapshot
ARID1A loss derepresses a group of human endogenous retrovirus-H loci to modulate BRD4-dependent transcription
inferred← citeshttps://doi.org/10.1038/s41467-022-34800-wopenalex-snapshot
Primate-specific transposable elements shape transcriptional networks during human development
inferred← citeshttps://doi.org/10.1038/s41467-023-36364-9openalex-snapshot
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes
inferred← citeshttps://doi.org/10.1038/s41467-023-41081-4openalex-snapshot
Transposable elements as tissue-specific enhancers in cancers of endodermal lineage
inferred← citeshttps://doi.org/10.1038/s41467-024-47391-5openalex-snapshot
Emergence of enhancers at late DNA replicating regions
inferred← citeshttps://doi.org/10.1038/s41467-024-53892-0openalex-snapshot
Development and evolution of Drosophila chromatin landscape in a 3D genome context
inferred← citeshttps://doi.org/10.1038/s41467-025-60023-wopenalex-snapshot
The latent cis-regulatory potential of mobile DNA in Escherichia coli
inferred← citeshttps://doi.org/10.1038/s41467-025-64690-7openalex-snapshot
Transposon invasion of primate genomes shaped human inflammatory enhancers and susceptibility to inflammatory diseases
inferred← citeshttps://doi.org/10.1038/s41467-026-68934-yopenalex-snapshot
Architectural and evolutionary features of TE-derived TSSs shape tissue-specific promoter activity in the human genome
inferred← citeshttps://doi.org/10.1038/s41467-026-75700-7openalex-snapshot
Gene regulatory innovations from transposable elements in primate cerebellum development
inferred← citeshttps://doi.org/10.1038/s41576-018-0050-xopenalex-snapshot
Computational tools to unmask transposable elements
inferred← citeshttps://doi.org/10.1038/s41577-025-01172-3openalex-snapshot
Transposable elements as instructors of the immune system
inferred← citeshttps://doi.org/10.1038/s41580-022-00457-yopenalex-snapshot
Roles of transposable elements in the regulation of mammalian transcription
inferred← citeshttps://doi.org/10.1038/s41586-020-2559-3openalex-snapshot
Index and biological spectrum of human DNase I hypersensitive sites
inferred← citeshttps://doi.org/10.1038/s41586-021-03542-yopenalex-snapshot
The role of retrotransposable elements in ageing and age-associated diseases
inferred← citeshttps://doi.org/10.1038/s41586-025-09571-1openalex-snapshot
A human-specific regulatory mechanism revealed in a pre-implantation model
inferred← citeshttps://doi.org/10.1038/s41588-019-0479-7openalex-snapshot
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
inferred← citeshttps://doi.org/10.1038/s41588-023-01390-2openalex-snapshot
Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk
inferred← citeshttps://doi.org/10.1038/s41588-026-02585-zopenalex-snapshot
Transposable elements shape stemness in normal and leukemic hematopoiesis
inferred← citeshttps://doi.org/10.1038/s41593-022-01031-7openalex-snapshot
Integrating whole-genome sequencing with multi-omic data reveals the impact of structural variants on gene regulation in the human brain
inferred← citeshttps://doi.org/10.1038/s41594-023-01016-5openalex-snapshot
H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function
inferred← citeshttps://doi.org/10.1038/s42003-021-02217-8openalex-snapshot
LINE-1 transcription in round spermatids is associated with accretion of 5-carboxylcytosine in their open reading frames
inferred← citeshttps://doi.org/10.1038/s44320-025-00151-zopenalex-snapshot
Hominoid-specific transposable elements reshaped neural crest migration in craniofacial development
inferred← citeshttps://doi.org/10.1038/srep41960openalex-snapshot
Expression of human endogenous retrovirus-K is strongly associated with the basal-like breast cancer phenotype
inferred← citeshttps://doi.org/10.1042/bst20130157openalex-snapshot
Alu elements: at the crossroads between disease and evolution
inferred← citeshttps://doi.org/10.1042/bst20190937openalex-snapshot
Mobility connects: transposable elements wire new transcriptional networks by transferring transcription factor binding motifs
inferred← citeshttps://doi.org/10.1073/pnas.1912008117openalex-snapshot
Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers
inferred← citeshttps://doi.org/10.1073/pnas.2510663122openalex-snapshot
Derepression of transposable elements in the mouse prefrontal cortex disrupts social behavior
inferred← citeshttps://doi.org/10.1080/10409238.2016.1226748openalex-snapshot
Exploring the read-write genome: mobile DNA and mammalian adaptation
inferred← citeshttps://doi.org/10.1080/15384101.2015.1022696openalex-snapshot
New bioinformatic tool for quick identification of functionally relevant endogenous retroviral inserts in human genome
inferred← citeshttps://doi.org/10.1080/17501911.2026.2685055openalex-snapshot
Transposable element regulation in mammalian germ cells and other contexts: multilayered repression, fertility, and regulated activation
inferred← citeshttps://doi.org/10.1080/2159256x.2017.1280116openalex-snapshot
Population and clinical genetics of human transposable elements in the (post) genomic era
inferred← citeshttps://doi.org/10.1089/cmb.2017.0228openalex-snapshot
Genome-Wide Analysis of the Association of Transposable Elements with Gene Regulation Suggests that Alu Elements Have the Largest Overall Regulatory Impact
inferred← citeshttps://doi.org/10.1093/g3journal/jkad034openalex-snapshot
Functional validation of transposable element–derived cis-regulatory elements in Atlantic salmon
inferred← citeshttps://doi.org/10.1093/gbe/evaa004openalex-snapshot
Independent Transposon Exaptation Is a Widespread Mechanism of Redundant Enhancer Evolution in the Mammalian Genome
inferred← citeshttps://doi.org/10.1093/gbe/evab062openalex-snapshot
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality
inferred← citeshttps://doi.org/10.1093/gbe/evv005openalex-snapshot
Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
inferred← citeshttps://doi.org/10.1093/gbe/evv081openalex-snapshot
Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs
inferred← citeshttps://doi.org/10.1093/gbe/evv152openalex-snapshot
Multilevel Selection Theory and the Evolutionary Functions of Transposable Elements: Fig. 1.—
inferred← citeshttps://doi.org/10.1093/gbe/evw192openalex-snapshot
The Role of Retrotransposons in Gene Family Expansions in the Human and Mouse Genomes
inferred← citeshttps://doi.org/10.1093/gbe/evz125openalex-snapshot
Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths
inferred← citeshttps://doi.org/10.1093/genetics/iyac074openalex-snapshot
Reconstruction of full-length LINE-1 progenitors from ancestral genomes
inferred← citeshttps://doi.org/10.1093/gigascience/giaa139openalex-snapshot
Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments
inferred← citeshttps://doi.org/10.1093/hmg/ddt669openalex-snapshot
Disruption of the ASTN2/TRIM32 locus at 9q33.1 is a risk factor in males for autism spectrum disorders, ADHD and other neurodevelopmental phenotypes
inferred← citeshttps://doi.org/10.1093/molbev/msab369openalex-snapshot
Positive Selection and Enhancer Evolution Shaped Lifespan and Body Mass in Great Apes
inferred← citeshttps://doi.org/10.1093/molbev/msac080openalex-snapshot
Dynamics and Impacts of Transposable Element Proliferation in the Drosophila nasuta Species Group Radiation
inferred← citeshttps://doi.org/10.1093/molbev/msad092openalex-snapshot
Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia
inferred← citeshttps://doi.org/10.1093/molbev/msx219openalex-snapshot
Transposable Element Exaptation into Regulatory Regions Is Rare, Influenced by Evolutionary Age, and Subject to Pleiotropic Constraints
inferred← citeshttps://doi.org/10.1093/molbev/msy143openalex-snapshot
Novel Bioinformatics Approach Identifies Transcriptional Profiles of Lineage-Specific Transposable Elements at Distinct Loci in the Human Dorsolateral Prefrontal Cortex
inferred← citeshttps://doi.org/10.1093/nar/gkac088openalex-snapshot
Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells
inferred← citeshttps://doi.org/10.1093/nar/gkae014openalex-snapshot
Genomic profiling of six human somatic histone H1 variants denotes that H1X accumulates at recently incorporated transposable elements
inferred← citeshttps://doi.org/10.1093/nar/gku302openalex-snapshot
VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery
inferred← citeshttps://doi.org/10.1093/nar/gkv1292openalex-snapshot
The 3D folding of metazoan genomes correlates with the association of similar repetitive elements
inferred← citeshttps://doi.org/10.1093/nar/gkw1286openalex-snapshot
Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements
inferred← citeshttps://doi.org/10.1093/nar/gkw530openalex-snapshot
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use
inferred← citeshttps://doi.org/10.1093/nar/gkz1003openalex-snapshot
Retrotransposons spread potential cis-regulatory elements during mammary gland evolution
inferred← citeshttps://doi.org/10.1093/nar/gkz544openalex-snapshot
The nucleosome position-encoding WW/SS sequence pattern is depleted in mammalian genes relative to other eukaryotes
inferred← citeshttps://doi.org/10.1093/stmcls/sxac067openalex-snapshot
Long Noncoding RNA Lx8-SINE B2 Interacts with Eno1 to Regulate Self-Renewal and Metabolism of Embryonic Stem Cells
inferred← citeshttps://doi.org/10.1097/hrp.0000000000000206openalex-snapshot
A Potential Role for the Noncoding Transcriptome in Psychiatric Disorders
inferred← citeshttps://doi.org/10.1098/rspb.2016.1602openalex-snapshot
Positive selection of the TRIM family regulatory region in primate genomes
inferred← citeshttps://doi.org/10.1098/rstb.2013.0506openalex-snapshot
An evolving view of epigenetic complexity in the brain
inferred← citeshttps://doi.org/10.1098/rstb.2019.0332openalex-snapshot
Transposable elements have contributed human regulatory regions that are activated upon bacterial infection
inferred← citeshttps://doi.org/10.1098/rstb.2019.0347openalex-snapshot
Transposable elements as a potent source of diverse cis -regulatory sequences in mammalian genomes
inferred← citeshttps://doi.org/10.1101/142018openalex-snapshot
Genome-wide analysis of the association of transposable elements with gene regulation suggests that Alu elements have the largest overall regulatory impact
inferred← citeshttps://doi.org/10.1101/2020.05.31.126169openalex-snapshot
LINE elements are a reservoir of regulatory potential in mammalian genomes
inferred← citeshttps://doi.org/10.1101/2020.09.13.295501openalex-snapshot
Differential expression of transposable elements in stem cell lineages of the preimplantation embryo
inferred← citeshttps://doi.org/10.1101/2020.11.01.364232openalex-snapshot
Regulatory diversity contributes to a divergent transcriptional response to dietary changes in mammals
inferred← citeshttps://doi.org/10.1101/2021.03.09.434541openalex-snapshot
Endogenous retrovirus rewired the gene regulatory network shared between primordial germ cells and naïve pluripotent cells in hominoids
inferred← citeshttps://doi.org/10.1101/2021.06.28.450127openalex-snapshot
ARID1A loss derepresses human endogenous retrovirus-H to modulate BRD4-dependent transcription
inferred← citeshttps://doi.org/10.1101/2021.08.18.456764openalex-snapshot
Primate-specific cis - and trans -regulators shape transcriptional networks during human development
inferred← citeshttps://doi.org/10.1101/2022.02.01.475239openalex-snapshot
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes and gene regulation
inferred← citeshttps://doi.org/10.1101/2022.03.16.483999openalex-snapshot
Evolution of transposable element-derived enhancer activity
inferred← citeshttps://doi.org/10.1101/2022.03.25.485726openalex-snapshot
Mobile elements in human population-specific genome and phenotype divergence
inferred← citeshttps://doi.org/10.1101/2022.08.15.504029openalex-snapshot
Exposure of Greenlandic Inuit and South African VhaVenda men to the persistent DDT metabolite is associated with an altered sperm epigenome at regions implicated in paternal epigenetic transmission and developmental disease – a cross-sectional study
inferred← citeshttps://doi.org/10.1101/2022.10.25.513724openalex-snapshot
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-κB binding
inferred← citeshttps://doi.org/10.1101/2022.11.19.517182openalex-snapshot
Population genomics reveals mechanisms and dynamics of de novo proto-gene emergence in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/2022.11.28.518159openalex-snapshot
Development and Evolution of Drosophila Chromatin Landscape in a 3D genome context
inferred← citeshttps://doi.org/10.1101/2022.12.22.521323openalex-snapshot
Emergence of new enhancers at late DNA replicating regions
inferred← citeshttps://doi.org/10.1101/2023.04.02.535219openalex-snapshot
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
inferred← citeshttps://doi.org/10.1101/2023.10.22.563463openalex-snapshot
The latent cis-regulatory potential of mobile DNA
inferred← citeshttps://doi.org/10.1101/2023.12.07.570592openalex-snapshot
Cryptic endogenous retrovirus subfamilies in the primate lineage
inferred← citeshttps://doi.org/10.1101/2024.08.07.606967openalex-snapshot
Transposable elements impact the human regulatory landscape through cell type specific epigenomic associations
inferred← citeshttps://doi.org/10.1101/2024.10.24.620010openalex-snapshot
Unraveling transposable element-mediated regulatory landscape in diverse human immune cells
inferred← citeshttps://doi.org/10.1101/2025.01.30.635440openalex-snapshot
The KRAB-Zinc Finger protein ZKSCAN3 represses enhancers via embedded retrotransposons
inferred← citeshttps://doi.org/10.1101/2025.03.29.646092openalex-snapshot
Expression spectrum of TE-derived transcripts in human adult tissues
inferred← citeshttps://doi.org/10.1101/2025.04.04.647334openalex-snapshot
Hominoid-specific transposable elements rewired the expression of neural crest migration genes
inferred← citeshttps://doi.org/10.1101/2025.08.22.671821openalex-snapshot
Cross-regulation of (p)ppGpp and c-di-GMP pathways controls a cell-cycle transition
inferred← citeshttps://doi.org/10.1101/2025.08.30.673284openalex-snapshot
Recent Non-LTR Retrotransposon Activity Predicts Cancer Prevalence in Mammals
inferred← citeshttps://doi.org/10.1101/2025.10.15.682527openalex-snapshot
Gene regulatory innovations from transposable elements in mammalian cerebellum development
inferred← citeshttps://doi.org/10.1101/207167openalex-snapshot
An unusual nucleosomal sequence pattern is enriched in mammalian genes
inferred← citeshttps://doi.org/10.1101/295329openalex-snapshot
The impact of endogenous retroviruses on nuclear organization and gene expression
inferred← citeshttps://doi.org/10.1101/523597openalex-snapshot
The KZFP/KAP1 system controls transposable elements-embedded regulatory sequences in adult T cells
inferred← citeshttps://doi.org/10.1101/594200openalex-snapshot
Characterization of LINE-1 transposons in a human genome at allelic resolution
inferred← citeshttps://doi.org/10.1101/772954openalex-snapshot
Endogenous retroviruses are a source of enhancers with oncogenic potential in acute myeloid leukaemia
inferred← citeshttps://doi.org/10.1101/822510openalex-snapshot
Index and biological spectrum of accessible DNA elements in the human genome
inferred← citeshttps://doi.org/10.1101/gad.241661.114openalex-snapshot
Evolutionally dynamic L1 regulation in embryonic stem cells
inferred← citeshttps://doi.org/10.1101/gad.344473.120openalex-snapshot
TFs for TEs: the transcription factor repertoire of mammalian transposable elements
inferred← citeshttps://doi.org/10.1101/gr.168872.113openalex-snapshot
Widespread contribution of transposable elements to the innovation of gene regulatory networks
inferred← citeshttps://doi.org/10.1101/gr.168963.113openalex-snapshot
Noncoding origins of anthropoid traits and a new null model of transposon functionalization
inferred← citeshttps://doi.org/10.1101/gr.191031.115openalex-snapshot
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
inferred← citeshttps://doi.org/10.1101/gr.218149.116openalex-snapshot
Transposable elements are the primary source of novelty in primate gene regulation
inferred← citeshttps://doi.org/10.1101/gr.233585.117openalex-snapshot
LTRs activated by Epstein-Barr virus–induced transformation of B cells alter the transcriptome
inferred← citeshttps://doi.org/10.1101/gr.234096.117openalex-snapshot
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
inferred← citeshttps://doi.org/10.1101/gr.235747.118openalex-snapshot
Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions
inferred← citeshttps://doi.org/10.1101/gr.275354.121openalex-snapshot
Embryonic LTR retrotransposons supply promoter modules to somatic tissues
inferred← citeshttps://doi.org/10.1101/gr.276052.121openalex-snapshot
Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
inferred← citeshttps://doi.org/10.1101/gr.276863.122openalex-snapshot
Functional characterization of enhancer activity during a long terminal repeat's evolution
inferred← citeshttps://doi.org/10.1101/gr.277482.122openalex-snapshot
Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/gr.277950.123openalex-snapshot
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
inferred← citeshttps://doi.org/10.1104/pp.17.01467openalex-snapshot
Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome
inferred← citeshttps://doi.org/10.1111/dgd.12423openalex-snapshot
Identifying co‐opted transposable elements using comparative epigenomics
inferred← citeshttps://doi.org/10.1111/mec.14197openalex-snapshot
Whole‐genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine‐scale recombination rate variation in birds
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