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An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis

https://doi.org/10.1101/213025
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00018-010-0536-yopenalex-snapshot
The gap gene network
inferredcites →https://doi.org/10.1016/j.asd.2016.11.007openalex-snapshot
Delta-Notch signalling in segmentation
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Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae)
inferredcites →https://doi.org/10.1016/j.cell.2008.01.053openalex-snapshot
A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
inferredcites →https://doi.org/10.1016/j.physd.2004.07.003openalex-snapshot
Pattern formation and nuclear divisions are uncoupled in Drosophila segmentation: comparison of spatially discrete and continuous models
inferredcites →https://doi.org/10.1016/j.ydbio.2008.10.037openalex-snapshot
Genetic regulation of engrailed and wingless in Tribolium segmentation and the evolution of pair-rule segmentation
inferredcites →https://doi.org/10.1016/s0022-5193(69)80016-0openalex-snapshot
Positional information and the spatial pattern of cellular differentiation
inferredcites →https://doi.org/10.1038/msb.2012.72openalex-snapshot
Accurate measurements of dynamics and reproducibility in small genetic networks
inferredcites →https://doi.org/10.1038/nature02678openalex-snapshot
Dynamic control of positional information in the early Drosophila embryo
inferredcites →https://doi.org/10.1038/nbt.3192openalex-snapshot
Spatial reconstruction of single-cell gene expression data
inferredcites →https://doi.org/10.1038/ncomms10031openalex-snapshot
Temporal and spatial dynamics of scaling-specific features of a gene regulatory network in Drosophila
inferredcites →https://doi.org/10.1039/b904722kopenalex-snapshot
Modelling the Drosophila embryo
inferredcites →https://doi.org/10.1073/pnas.0510440103openalex-snapshot
A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum
inferredcites →https://doi.org/10.1093/bioinformatics/17.1.3openalex-snapshot
Registration of the expression patterns of Drosophila segmentation genes by two independent methods
inferredcites →https://doi.org/10.1093/nar/gku1142openalex-snapshot
SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos
inferredcites →https://doi.org/10.1126/science.1179047openalex-snapshot
Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation
inferredcites →https://doi.org/10.1126/science.1250212openalex-snapshot
Highly Multiplexed Subcellular RNA Sequencing in Situ
inferredcites →https://doi.org/10.1126/science.aaa5838openalex-snapshot
BMP gradients: A paradigm for morphogen-mediated developmental patterning
inferredcites →https://doi.org/10.1126/science.aaa6090openalex-snapshot
Spatially resolved, highly multiplexed RNA profiling in single cells
inferredcites →https://doi.org/10.1126/science.aaf2403openalex-snapshot
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
inferredcites →https://doi.org/10.1126/science.aan3235openalex-snapshot
The Drosophila embryo at single-cell transcriptome resolution
inferredcites →https://doi.org/10.1186/1752-0509-3-94openalex-snapshot
Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis
inferredcites →https://doi.org/10.1186/1752-0509-4-17openalex-snapshot
Reverse engineering a gene network using an asynchronous parallel evolution strategy
inferredcites →https://doi.org/10.1242/dev.062141openalex-snapshot
How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation
inferredcites →https://doi.org/10.1242/dev.101.1.1openalex-snapshot
The molecular basis for metameric pattern in the Drosophila embryo
inferredcites →https://doi.org/10.1242/dev.113688openalex-snapshot
Local homeoprotein diffusion can stabilize boundaries generated by graded positional cues
inferredcites →https://doi.org/10.1242/dev.114991openalex-snapshot
Positional information and reaction-diffusion: two big ideas in developmental biology combine
inferredcites →https://doi.org/10.1242/dev.129452openalex-snapshot
Morphogen rules: design principles of gradient-mediated embryo patterning
inferredcites →https://doi.org/10.1371/journal.pbio.0030064openalex-snapshot
Engineering Gene Networks to Emulate Drosophila Embryonic Pattern Formation
inferredcites →https://doi.org/10.1371/journal.pbio.1000049openalex-snapshot
Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation
inferredcites →https://doi.org/10.1371/journal.pbio.2002439openalex-snapshot
Dynamic patterning by the Drosophila pair-rule network reconciles long-germ and short-germ segmentation
inferredcites →https://doi.org/10.1371/journal.pcbi.0020051openalex-snapshot
Reverse Engineering the Gap Gene Network of Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pcbi.1000303openalex-snapshot
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
inferredcites →https://doi.org/10.1371/journal.pcbi.1002589openalex-snapshot
Efficient Reverse-Engineering of a Developmental Gene Regulatory Network
inferredcites →https://doi.org/10.1371/journal.pcbi.1002654openalex-snapshot
Mutual Repression Enhances the Steepness and Precision of Gene Expression Boundaries
inferredcites →https://doi.org/10.1371/journal.pone.0021145openalex-snapshot
The Drosophila Gap Gene Network Is Composed of Two Parallel Toggle Switches
inferredcites →https://doi.org/10.1534/genetics.104.027334openalex-snapshot
Dynamical Analysis of Regulatory Interactions in the Gap Gene System of Drosophila melanogaster
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