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Dynamic patterning by the Drosophila pair-rule network reconciles long-germ and short-germ segmentation
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Outgoing claims: the papers this work cites, builds on, or argues with.
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On the dynamic nature of positional information
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A genetic switch, based on negative regulation, sharpens stripes in Drosophila embryos
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Characterization and localization of the even‐skipped protein of Drosophila.
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Autoregulatory and gap gene response elements of the even‐skipped promoter of Drosophila.
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Molecular analysis of odd‐skipped, a zinc finger encoding segmentation gene with a novel pair‐rule expression pattern.
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Regulation of even‐skipped stripe 2 in the Drosophila embryo.
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Role of the gooseberry gene in Drosophila embryos: maintenance of wingless expression by a wingless‐‐gooseberry autoregulatory loop.
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The gap protein knirps mediates both quenching and direct repression in the Drosophila embryo.
inferredcites →https://doi.org/10.1002/j.1460-2075.1996.tb01100.xopenalex-snapshot
In vivo interactions of the Drosophila Hairy and Runt transcriptional repressors with target promoters.
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Establishing Parasegments in Drosophila Embryos: Roles of the odd-skipped and naked Genes
inferredcites →https://doi.org/10.1006/dbio.1996.0117openalex-snapshot
Regulation of Two Pair-Rule Stripes by a Single Enhancer in theDrosophilaEmbryo
inferredcites →https://doi.org/10.1006/dbio.1996.0146openalex-snapshot
Disperse versus Compact Elements for the Regulation ofruntStripes inDrosophila
inferredcites →https://doi.org/10.1007/978-3-662-02454-6openalex-snapshot
The Embryonic Development of Drosophila melanogaster
inferredcites →https://doi.org/10.1007/bf00848157openalex-snapshot
Mutations affecting the pattern of the larval cuticle inDrosophila melanogaster
inferredcites →https://doi.org/10.1007/bf01613769openalex-snapshot
The embryonic development of Drosophila melanogaster
inferredcites →https://doi.org/10.1007/s00427-008-0207-2openalex-snapshot
Hedgehog signaling pathway function conserved in Tribolium segmentation
inferredcites →https://doi.org/10.1007/s004270050183openalex-snapshot
A caudal homologue in the short germ band beetle Tribolium shows similarities to both, the Drosophila and the vertebrate caudal expression patterns
inferredcites →https://doi.org/10.1016/0022-5193(73)90247-6openalex-snapshot
Boolean formalization of genetic control circuits
inferredcites →https://doi.org/10.1016/0092-8674(84)90418-5openalex-snapshot
Spatial distribution of transcripts from the segmentation gene fushi tarazu during Drosophila embryonic development
inferredcites →https://doi.org/10.1016/0092-8674(85)90232-6openalex-snapshot
Control elements of the Drosophila segmentation gene fushi tarazu
inferredcites →https://doi.org/10.1016/0092-8674(86)90018-8openalex-snapshot
Regulatory interactions between the segmentation genes fushi tarazu, hairy, and engrailed in the Drosophila blastoderm
inferredcites →https://doi.org/10.1016/0092-8674(86)90393-4openalex-snapshot
Dosage requirements for runt in the segmentation of Drosophila embryos
inferredcites →https://doi.org/10.1016/0092-8674(86)90515-5openalex-snapshot
Isolation, structure, and expression of even-skipped: A second pair-rule gene of Drosophila containing a homeo box
inferredcites →https://doi.org/10.1016/0092-8674(86)90517-9openalex-snapshot
Repression and turnover pattern fushi tarazu RNA in the early Drosophila embryo
inferredcites →https://doi.org/10.1016/0092-8674(86)90543-xopenalex-snapshot
Zygotically active genes that affect the spatial expression of the fushi tarazu segmentation gene during early Drosophila embryogenesis
inferredcites →https://doi.org/10.1016/0092-8674(87)90523-xopenalex-snapshot
Regulation and function of the Drosophila segmentation gene fushi tarazu
inferredcites →https://doi.org/10.1016/0092-8674(87)90636-2openalex-snapshot
Pattern abnormalities induced by ectopic expression of the Drosophila gene hairy are associated with repression of ftz transcription
inferredcites →https://doi.org/10.1016/0092-8674(88)90182-1openalex-snapshot
A gradient of bicoid protein in Drosophila embryos
inferredcites →https://doi.org/10.1016/0092-8674(88)90183-3openalex-snapshot
The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner
inferredcites →https://doi.org/10.1016/0092-8674(89)90916-1openalex-snapshot
Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cues
inferredcites →https://doi.org/10.1016/0092-8674(91)90366-7openalex-snapshot
Apical localization of pair-rule transcripts requires 3′ sequences and limits protein diffusion in the Drosophila blastoderm embryo
inferredcites →https://doi.org/10.1016/0092-8674(94)90351-4openalex-snapshot
The genetic basis of patterned baldness in Drosophila
inferredcites →https://doi.org/10.1016/0168-9525(90)90234-wopenalex-snapshot
Making stripes in the Drosophila embryo
inferredcites →https://doi.org/10.1016/0925-4773(90)90130-eopenalex-snapshot
Network of interactions among pair-rule genes regulating paired expression during primordial segmentation of Drosophila
inferredcites →https://doi.org/10.1016/0925-4773(92)90022-copenalex-snapshot
The Drosophila segmentation gene runt has an extended cis-regulatory region that is required for vital expression at other stages of development
inferredcites →https://doi.org/10.1016/0925-4773(93)90019-topenalex-snapshot
Regulation of runt transcription by Drosophila segmentation genes
inferredcites →https://doi.org/10.1016/0925-4773(94)00333-iopenalex-snapshot
Non-periodic cues generate seven ftz stripes in the Drosophila embryo
inferredcites →https://doi.org/10.1016/0925-4773(94)90021-3openalex-snapshot
Multiple regulatory elements direct the complex expression pattern of the Drosophila segmentation gene paired
inferredcites →https://doi.org/10.1016/0925-4773(94)90049-3openalex-snapshot
A two-step mode of stripe formation in the Drosophila blastoderm requires interactions among primary pair rule genes
inferredcites →https://doi.org/10.1016/0959-437x(94)90068-eopenalex-snapshot
The making of a maggot: patterning the Drosophila embryonic epidermis
inferredcites →https://doi.org/10.1016/j.asd.2016.10.003openalex-snapshot
Linking gene regulation to cell behaviors in the posterior growth zone of sequentially segmenting arthropods
inferredcites →https://doi.org/10.1016/j.biosystems.2005.10.003openalex-snapshot
GINsim: A software suite for the qualitative modelling, simulation and analysis of regulatory networks
inferredcites →https://doi.org/10.1016/j.cell.2008.01.053openalex-snapshot
A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
inferredcites →https://doi.org/10.1016/j.cell.2011.02.012openalex-snapshot
Double-Strand Breaks in Heterochromatin Move Outside of a Dynamic HP1a Domain to Complete Recombinational Repair
inferredcites →https://doi.org/10.1016/j.cell.2012.03.018openalex-snapshot
A System of Repressor Gradients Spatially Organizes the Boundaries of Bicoid-Dependent Target Genes
inferredcites →https://doi.org/10.1016/j.cell.2013.07.025openalex-snapshot
Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity
inferredcites →https://doi.org/10.1016/j.cub.2003.08.045openalex-snapshot
Evolution of Segmentation: Rolling Back the Clock
inferredcites →https://doi.org/10.1016/j.cub.2004.07.026openalex-snapshot
A Double Segment Periodicity Underlies Segment Generation in Centipede Development
inferredcites →https://doi.org/10.1016/j.cub.2011.01.054openalex-snapshot
Long- and Short-Range Transcriptional Repressors Induce Distinct Chromatin States on Repressed Genes
inferredcites →https://doi.org/10.1016/j.cub.2013.08.054openalex-snapshot
Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning
inferredcites →https://doi.org/10.1016/j.cub.2016.02.054openalex-snapshot
Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo
inferredcites →https://doi.org/10.1016/j.cub.2016.04.055openalex-snapshot
Toll Genes Have an Ancestral Role in Axis Elongation
inferredcites →https://doi.org/10.1016/j.ydbio.2004.03.001openalex-snapshot
Drawing lines in the sand: even skipped et al. and parasegment boundaries
inferredcites →https://doi.org/10.1016/j.ydbio.2004.08.021openalex-snapshot
Different combinations of gap repressors for common stripes in Anopheles and Drosophila embryos
inferredcites →https://doi.org/10.1016/j.ydbio.2004.09.025openalex-snapshot
Groucho-dependent repression by Sloppy-paired 1 differentially positions anterior pair-rule stripes in the Drosophila embryo
inferredcites →https://doi.org/10.1016/j.ydbio.2005.06.014openalex-snapshot
Pax3/7 genes reveal conservation and divergence in the arthropod segmentation hierarchy
inferredcites →https://doi.org/10.1016/j.ydbio.2007.10.037openalex-snapshot
Characterization of the Drosophila segment determination morphome
inferredcites →https://doi.org/10.1016/j.ydbio.2013.06.017openalex-snapshot
Evolution of the pair rule gene network: Insights from a centipede
inferredcites →https://doi.org/10.1016/j.ydbio.2013.07.010openalex-snapshot
Deciphering the onychophoran ‘segmentation gene cascade’: Gene expression reveals limited involvement of pair rule gene orthologs in segmentation, but a highly conserved segment polarity gene network
inferredcites →https://doi.org/10.1016/j.ydbio.2013.09.021openalex-snapshot
The function of Notch signalling in segment formation in the crustacean Daphnia magna (Branchiopoda)
inferredcites →https://doi.org/10.1016/j.ydbio.2015.06.005openalex-snapshot
A thioredoxin fold protein Sh3bgr regulates Enah and is necessary for proper sarcomere formation
inferredcites →https://doi.org/10.1016/j.ydbio.2015.06.012openalex-snapshot
Analyses of interactions among pair-rule genes and the gap gene Krüppel in Bombyx segmentation
inferredcites →https://doi.org/10.1016/j.ydbio.2015.06.020openalex-snapshot
Gdf5 progenitors give rise to fibrocartilage cells that mineralize via hedgehog signaling to form the zonal enthesis
inferredcites →https://doi.org/10.1016/j.ydbio.2016.03.024openalex-snapshot
Hunchback knockdown induces supernumerary segment formation in Bombyx
inferredcites →https://doi.org/10.1016/s0022-5193(03)00201-7openalex-snapshot
Segmenting the fly embryo:
inferredcites →https://doi.org/10.1016/s0022-5193(05)80350-9openalex-snapshot
Regulatory networks seen as asynchronous automata: A logical description
inferredcites →https://doi.org/10.1016/s0022-5193(76)80131-2openalex-snapshot
A clock and wavefront model for control of the number of repeated structures during animal morphogenesis
inferredcites →https://doi.org/10.1016/s0065-2806(08)60255-6openalex-snapshot
Specification of the Basic Body Pattern in Insect Embryogenesis
inferredcites →https://doi.org/10.1016/s0960-9822(03)00451-2openalex-snapshot
Live Imaging of Endogenous RNA Reveals a Diffusion and Entrapment Mechanism for nanos mRNA Localization in Drosophila
inferredcites →https://doi.org/10.1016/s0960-9822(03)00534-7openalex-snapshot
Autoinhibition with Transcriptional Delay
inferredcites →https://doi.org/10.1016/s1097-2765(00)80143-4openalex-snapshot
Localization of ASH1 mRNA Particles in Living Yeast
inferredcites →https://doi.org/10.1016/s1569-1799(02)12027-2openalex-snapshot
Anterior-posterior patterning in the Drosophila embryo
inferredcites →https://doi.org/10.1038/224177a0openalex-snapshot
Homeostasis and Differentiation in Random Genetic Control Networks
inferredcites →https://doi.org/10.1038/287795a0openalex-snapshot
Mutations affecting segment number and polarity in Drosophila
inferredcites →https://doi.org/10.1038/313639a0openalex-snapshot
Parasegments and compartments in the Drosophila embryo
inferredcites →https://doi.org/10.1038/318439a0openalex-snapshot
Transcription pattern of the Drosophila segmentation gene hairy
inferredcites →https://doi.org/10.1038/319336a0openalex-snapshot
Structural homology of the product of the Drosophila Krüppel gene with Xenopus transcription factor IIIA
inferredcites →https://doi.org/10.1038/321493a0openalex-snapshot
Isolation of the paired gene of Drosophila and its spatial expression during early embryogenesis
inferredcites →https://doi.org/10.1038/324120a0openalex-snapshot
Organization of anterior pattern in the Drosophila embryo by the maternal gene bicoid
inferredcites →https://doi.org/10.1038/324537a0openalex-snapshot
A molecular gradient in early Drosophila embryos and its role in specifying the body pattern
inferredcites →https://doi.org/10.1038/327383a0openalex-snapshot
Finger protein of novel structure encoded by hunchback, a second member of the gap class of Drosophila segmentation genes
inferredcites →https://doi.org/10.1038/331073a0openalex-snapshot
Regulation of segment polarity genes in the Drosophila blastoderm by fushi tarazu and even skipped
inferredcites →https://doi.org/10.1038/332604a0openalex-snapshot
Two-tiered regulation of spatially patterned engrailed gene expression during Drosophila embryogenesis
inferredcites →https://doi.org/10.1038/335025a0openalex-snapshot
The molecular genetics of embryonic pattern formation in Drosophila
inferredcites →https://doi.org/10.1038/336489a0openalex-snapshot
Abdominal segmentation of the Drosophila embryo requires a hormone receptor-like protein encoded by the gap gene knirps
inferredcites →https://doi.org/10.1038/356804a0openalex-snapshot
Direct homeodomain–DNA interaction in the autoregulation of the fushi tarazu gene
inferredcites →https://doi.org/10.1038/379162a0openalex-snapshot
Patterning of the Drosophila embryo by a homeodomain-deleted Ftz polypeptide
inferredcites →https://doi.org/10.1038/msb.2012.48openalex-snapshot
A model of spatially restricted transcription in opposing gradients of activators and repressors
inferredcites →https://doi.org/10.1038/msb.2012.72openalex-snapshot
Accurate measurements of dynamics and reproducibility in small genetic networks
inferredcites →https://doi.org/10.1038/nature01682openalex-snapshot
Involvement of Notch and Delta genes in spider segmentation
inferredcites →https://doi.org/10.1038/nature02189openalex-snapshot
A self-organizing system of repressor gradients establishes segmental complexity in Drosophila
inferredcites →https://doi.org/10.1038/nature02678openalex-snapshot
Dynamic control of positional information in the early Drosophila embryo
inferredcites →https://doi.org/10.1038/nature06347openalex-snapshot
Interpretation of the sonic hedgehog morphogen gradient by a temporal adaptation mechanism
inferredcites →https://doi.org/10.1038/nature12879openalex-snapshot
Patterning and growth control by membrane-tethered Wingless
inferredcites →https://doi.org/10.1038/nature13953openalex-snapshot
A positional Toll receptor code directs convergent extension in Drosophila
inferredcites →https://doi.org/10.1038/ncomms7635openalex-snapshot
Changing cell behaviours during beetle embryogenesis correlates with slowing of segmentation
inferredcites →https://doi.org/10.1038/ng1886openalex-snapshot
Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nmeth.2089openalex-snapshot
NIH Image to ImageJ: 25 years of image analysis
inferredcites →https://doi.org/10.1038/nrg1724openalex-snapshot
Arthropod Segmentation: beyond the Drosophila paradigm
inferredcites →https://doi.org/10.1039/c3mb70187eopenalex-snapshot
Logical modelling of Drosophila signalling pathways
inferredcites →https://doi.org/10.1039/c5ib00321kopenalex-snapshot
The appeasement of Doug: a synthetic approach to enhancer biology
inferredcites →https://doi.org/10.1046/j.1525-142x.2001.003002109.xopenalex-snapshot
Developmental system drift and flexibility in evolutionary trajectories
inferredcites →https://doi.org/10.1073/pnas.0510440103openalex-snapshot
A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum
inferredcites →https://doi.org/10.1073/pnas.0804093105openalex-snapshot
Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana
inferredcites →https://doi.org/10.1073/pnas.1207852109openalex-snapshot
Predictive computation of genomic logic processing functions in embryonic development
inferredcites →https://doi.org/10.1073/pnas.1220912110openalex-snapshot
Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network
inferredcites →https://doi.org/10.1073/pnas.1315642110openalex-snapshot
Positional information, in bits
inferredcites →https://doi.org/10.1073/pnas.1410022111openalex-snapshot
Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos
inferredcites →https://doi.org/10.1089/10665270252833208openalex-snapshot
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
inferredcites →https://doi.org/10.1093/embo-reports/kve255openalex-snapshot
Generating patterns from fields of cells
inferredcites →https://doi.org/10.1093/emboj/16.10.2883openalex-snapshot
hairy mediates dominant repression in the Drosophila embryo
inferredcites →https://doi.org/10.1093/genetics/111.3.463openalex-snapshot
GENETIC ANALYSIS OF THE HAIRY LOCUS IN DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1093/genetics/154.1.273openalex-snapshot
Quantitative Analysis of Gene Function in the Drosophila Embryo
inferredcites →https://doi.org/10.1093/molbev/msw013openalex-snapshot
Gap Gene Regulatory Dynamics Evolve along a Genotype Network
inferredcites →https://doi.org/10.1093/nar/gkn717openalex-snapshot
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution
inferredcites →https://doi.org/10.1101/gad.1.10.1212openalex-snapshot
Establishment and refinement of segmental pattern in the Drosophila embryo: spatial control of engrailed expression by pair-rule genes.
inferredcites →https://doi.org/10.1101/gad.1.10.1226openalex-snapshot
Cytoarchitecture and the patterning of fushi tarazu expression in the Drosophila blastoderm.
inferredcites →https://doi.org/10.1101/gad.1.9.981openalex-snapshot
Complementary patterns of even-skipped and fushi tarazu expression involve their differential regulation by a common set of segmentation genes in Drosophila.
inferredcites →https://doi.org/10.1101/gad.2.12b.1812openalex-snapshot
Gene activities and segmental patterning in Drosophila: analysis of odd-skipped and pair-rule double mutants.
inferredcites →https://doi.org/10.1101/gad.2.12b.1824openalex-snapshot
Molecular analysis of even-skipped mutants in Drosophila development.
inferredcites →https://doi.org/10.1101/gad.2.7.883openalex-snapshot
Expression, function, and regulation of the hairy segmentation protein in the Drosophila embryo.
inferredcites →https://doi.org/10.1101/gad.2.8.1037openalex-snapshot
Region-specific alleles of the Drosophila segmentation gene hairy.
inferredcites →https://doi.org/10.1101/gad.2.9.1179openalex-snapshot
Isolation of the Drosophila segmentation gene runt and analysis of its expression during embryogenesis.
inferredcites →https://doi.org/10.1101/gad.2.9.1194openalex-snapshot
Spatial regulation of engrailed expression in the Drosophila embryo.
inferredcites →https://doi.org/10.1101/gad.3.3.384openalex-snapshot
Transcriptional control of Drosophila fushi tarazu zebra stripe expression.
inferredcites →https://doi.org/10.1101/gad.4.10.1701openalex-snapshot
The Drosophila segmentation gene runt encodes a novel nuclear regulatory protein that is also expressed in the developing nervous system.
inferredcites →https://doi.org/10.1101/gad.5.5.827openalex-snapshot
Transcriptional regulation of a pair-rule stripe in Drosophila.
inferredcites →https://doi.org/10.1101/gad.5.5.840openalex-snapshot
Individual stripe regulatory elements in the Drosophila hairy promoter respond to maternal, gap, and pair-rule genes.
inferredcites →https://doi.org/10.1101/gad.6.6.1030openalex-snapshot
The Drosophila sloppy paired locus encodes two proteins involved in segmentation that show homology to mammalian transcription factors.
inferredcites →https://doi.org/10.1101/gad.6.9.1740openalex-snapshot
Concentration-dependent activities of the even-skipped protein in Drosophila embryos.
inferredcites →https://doi.org/10.1101/gad.7.3.491openalex-snapshot
Transcriptional repression by the Drosophila even-skipped protein: definition of a minimal repression domain.
inferredcites →https://doi.org/10.1101/gad.8.1.105openalex-snapshot
odd-paired: a zinc finger pair-rule protein required for the timely activation of engrailed and wingless in Drosophila embryos.
inferredcites →https://doi.org/10.1101/gad.8.8.899openalex-snapshot
Localized expression of sloppy paired protein maintains the polarity of Drosophila parasegments.
inferredcites →https://doi.org/10.1101/sqb.1985.050.01.020openalex-snapshot
Genes Affecting the Segmental Subdivision of the Drosophila Embryo
inferredcites →https://doi.org/10.1109/mcse.2007.55openalex-snapshot
Matplotlib: A 2D Graphics Environment
inferredcites →https://doi.org/10.1109/mcse.2010.145openalex-snapshot
Automatic Lip-Contour Extraction and Mouth-Structure Segmentation in Images
inferredcites →https://doi.org/10.1109/mcse.2011.37openalex-snapshot
The NumPy Array: A Structure for Efficient Numerical Computation
inferredcites →https://doi.org/10.1111/j.1525-142x.2005.05065.xopenalex-snapshot
Pair rule gene orthologs in spider segmentation
inferredcites →https://doi.org/10.1111/j.1525-142x.2005.05066.xopenalex-snapshot
Short and long germ segmentation: unanswered questions in the evolution of a developmental mode
inferredcites →https://doi.org/10.1126/science.1218256openalex-snapshot
A Segmentation Clock with Two-Segment Periodicity in Insects
inferredcites →https://doi.org/10.1126/science.1224186openalex-snapshot
How Cells Know Where They Are
inferredcites →https://doi.org/10.1126/science.3755551openalex-snapshot
Cross-Regulatory Interactions Among Pair-Rule Genes in Drosophila
inferredcites →https://doi.org/10.1128/mcb.15.9.4683openalex-snapshot
A Domain of the even-skipped Protein Represses Transcription by Preventing TFIID Binding to a Promoter: Repression by Cooperative Blocking
inferredcites →https://doi.org/10.1128/mcb.15.9.5007openalex-snapshot
The Transcriptional Repressor Even-skipped Interacts Directly with TATA-Binding Protein
inferredcites →https://doi.org/10.1128/mcb.25.24.10711-10720.2005openalex-snapshot
An eh1-Like Motif in Odd-skipped Mediates Recruitment of Groucho and Repression In Vivo
inferredcites →https://doi.org/10.1146/annurev-cellbio-113015-023138openalex-snapshot
The Heidelberg Screen for Pattern Mutants of Drosophila: A Personal Account
inferredcites →https://doi.org/10.1146/annurev.ento.47.091201.145251openalex-snapshot
Short, Long, and Beyond: Molecular and Embryological Approaches to Insect Segmentation
inferredcites →https://doi.org/10.1146/annurev.ento.48.091801.112749openalex-snapshot
A NALYSIS AND F UNCTION OF T RANSCRIPTIONAL R EGULATORY E LEMENTS : Insights fromDrosophila
inferredcites →https://doi.org/10.1186/1741-7007-11-112openalex-snapshot
An analysis of segmentation dynamics throughout embryogenesis in the centipede Strigamia maritima
inferredcites →https://doi.org/10.1186/1752-0509-5-118openalex-snapshot
Mechanisms of gap gene expression canalization in the Drosophila blastoderm
inferredcites →https://doi.org/10.1186/2041-9139-2-5openalex-snapshot
Expression of myriapod pair rule gene orthologs
inferredcites →https://doi.org/10.1186/gb-2006-7-12-r124openalex-snapshot
Three-dimensional morphology and gene expression in the Drosophilablastoderm at cellular resolution II: dynamics
inferredcites →https://doi.org/10.1242/dev.01109openalex-snapshot
Ftz modulates Runt-dependent activation and repression of segment-polarity gene transcription
inferredcites →https://doi.org/10.1242/dev.062141openalex-snapshot
How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation
inferredcites →https://doi.org/10.1242/dev.085126openalex-snapshot
A segmentation clock operating in blastoderm and germband stages ofTriboliumdevelopment
inferredcites →https://doi.org/10.1242/dev.096271openalex-snapshot
Cell and tissue dynamics during Tribolium embryogenesis revealed by versatile fluorescence labeling approaches
inferredcites →https://doi.org/10.1242/dev.101.1.1openalex-snapshot
The molecular basis for metameric pattern in the Drosophila embryo
inferredcites →https://doi.org/10.1242/dev.104.1.51openalex-snapshot
Accumulation of collagen III at the cleft points of developing mouse submandibular epithelium
inferredcites →https://doi.org/10.1242/dev.104.supplement.51openalex-snapshot
Interactions between the pair-rule genes runt, hairy, even-skipped and fushi tarazu and the establishment of periodic pattern in the Drosophila embryo
inferredcites →https://doi.org/10.1242/dev.105.4.761openalex-snapshot
Pattern formation in the Drosophila embryo: allocation of cells to parasegments by even-skipped and fushi tarazu
inferredcites →https://doi.org/10.1242/dev.107.3.489openalex-snapshot
Spatial control of hairy protein expression during embryogenesis
inferredcites →https://doi.org/10.1242/dev.107.3.663openalex-snapshot
The zygotic control of Drosophila pair-rule gene expression: I. A search for new pair-rule regulatory loci
inferredcites →https://doi.org/10.1242/dev.107.3.673openalex-snapshot
The zygotic control of Drosophila pair-rule gene expression: II. Spatial repression by gap and pair-rule gene products
inferredcites →https://doi.org/10.1242/dev.110.3.759openalex-snapshot
Dose-dependent regulation of pair-rule stripes by gap proteins and the initiation of segment polarity
inferredcites →https://doi.org/10.1242/dev.114.1.99openalex-snapshot
The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes
inferredcites →https://doi.org/10.1242/dev.118.1.255openalex-snapshot
Drosophila hairy pair-rule gene regulates embryonic patterning outside its apparent stripe domains
inferredcites →https://doi.org/10.1242/dev.118.3.785openalex-snapshot
Control of segmental asymmetry in Drosophila embryos
inferredcites →https://doi.org/10.1242/dev.120.6.1671openalex-snapshot
Gap gene properties of the pair-rule gene runt during Drosophila segmentation
inferredcites →https://doi.org/10.1242/dev.121.12.4371openalex-snapshot
Early even-skipped stripes act as morphogenetic gradients at the single cell level to establish engrailed expression
inferredcites →https://doi.org/10.1242/dev.122.11.3467openalex-snapshot
The Drosophila fish-hook gene encodes a HMG domain protein essential for segmentation and CNS development
inferredcites →https://doi.org/10.1242/dev.122.11.3669openalex-snapshot
The Dichaete gene of Drosophila melanogaster encodes a SOX-domain protein required for embryonic segmentation
inferredcites →https://doi.org/10.1242/dev.124.15.2915openalex-snapshot
Control of cell fates and segmentation in the Drosophila mesoderm
inferredcites →https://doi.org/10.1242/dev.125.23.4851openalex-snapshot
Dynamic changes in the functions of Odd-skipped during early Drosophila embryogenesis
inferredcites →https://doi.org/10.1242/dev.126.11.2527openalex-snapshot
Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients*
inferredcites →https://doi.org/10.1242/dev.126.7.1515openalex-snapshot
Kinetic analysis of segmentation gene interactions in Drosophila embryos
inferredcites →https://doi.org/10.1242/dev.127.13.2965openalex-snapshot
Mechanisms regulating target gene selection by the homeodomain-containing protein Fushi tarazu
inferredcites →https://doi.org/10.1242/dev.128.18.3445openalex-snapshot
Pax group III genes and the evolution of insect pair-rule patterning
inferredcites →https://doi.org/10.1242/dev.129.19.4411openalex-snapshot
The repressor activity of Even-skipped is highly conserved, and is sufficient to activateengrailedand to regulate both the spacing and stability of parasegment boundaries
inferredcites →https://doi.org/10.1242/dev.129.21.4931openalex-snapshot
Anterior repression of aDrosophilastripe enhancer requires three position-specific mechanisms
inferredcites →https://doi.org/10.1242/dev.155580openalex-snapshot
Evidence for the temporal regulation of insect segmentation by a conserved sequence of transcription factors
inferredcites →https://doi.org/10.1242/dev.83.supplement.289openalex-snapshot
Models for positional signalling, the threefold subdivision of segments and the pigmentation pattern of molluscs
inferredcites →https://doi.org/10.1242/jcs.1986.supplement_4.20openalex-snapshot
Hierarchical Inductions of Cell States: A Model for Segmentation in Drosophila
inferredcites →https://doi.org/10.1371/journal.pbio.1000049openalex-snapshot
Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation
inferredcites →https://doi.org/10.1371/journal.pbio.1001364openalex-snapshot
Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit
inferredcites →https://doi.org/10.1371/journal.pbio.2003174openalex-snapshot
A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila
inferredcites →https://doi.org/10.1371/journal.pcbi.0020051openalex-snapshot
Reverse Engineering the Gap Gene Network of Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pcbi.1000303openalex-snapshot
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
inferredcites →https://doi.org/10.1371/journal.pcbi.1005256openalex-snapshot
Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos
inferredcites →https://doi.org/10.1371/journal.pgen.1004677openalex-snapshot
Caudal Regulates the Spatiotemporal Dynamics of Pair-Rule Waves in Tribolium
inferredcites →https://doi.org/10.1371/journal.pgen.1006052openalex-snapshot
Predicting Ancestral Segmentation Phenotypes from Drosophila to Anopheles Using In Silico Evolution
inferredcites →https://doi.org/10.1534/genetics.104.027334openalex-snapshot
Dynamical Analysis of Regulatory Interactions in the Gap Gene System of Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.114.171850openalex-snapshot
Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework
inferredcites →https://doi.org/10.48550/arxiv.1612.08084openalex-snapshot
Optimal decoding of information from a genetic network
inferredcites →https://doi.org/10.5061/dryad.cg35kopenalex-snapshot
Data from: Odd-paired controls frequency doubling in Drosophila segmentation by altering the pair-rule gene regulatory network
inferredcites →https://doi.org/10.7554/elife.00522openalex-snapshot
Cellular resolution models for even skipped regulation in the entire Drosophila embryo
inferredcites →https://doi.org/10.7554/elife.01440openalex-snapshot
Dual mode of embryonic development is highlighted by expression and function of Nasonia pair-rule genes
showing the first 200 of 206 · page through all 206
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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How to build a larval body with less than a hundred cells? Insights from the early development of a stalked jellyfish (Staurozoa, Cnidaria)
inferred← citeshttps://doi.org/10.1002/9781119896715.ch12openalex-snapshot
Resource Allocation Determines Alternate Cell Fate in Bistable Genetic Switch
inferred← citeshttps://doi.org/10.1007/978-3-030-71737-7_4openalex-snapshot
Life’s Attractors Continued: Progress in Understanding Developmental Systems Through Reverse Engineering and In Silico Evolution
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Modelling the Evolution of Dynamic Regulatory Networks: Some Critical Insights
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The embryonic expression pattern of a second, hitherto unrecognized, paralog of the pair-rule gene sloppy-paired in the beetle Tribolium castaneum
inferred← citeshttps://doi.org/10.1007/s11033-022-07642-4openalex-snapshot
A systematic review on the effects of acrylamide and bisphenol A on the development of Drosophila melanogaster
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Drosophila embryo as experimental model: lessons learnt from genes in axis formation
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2019.11.014openalex-snapshot
Cellular, molecular, and biophysical control of epithelial cell intercalation
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2020.02.004openalex-snapshot
The evolution of the gene regulatory networks patterning the Drosophila Blastoderm
inferred← citeshttps://doi.org/10.1016/j.asd.2025.101446openalex-snapshot
Evolution and Homology of Leg Segments in Chelicerata: Evo-Devo Solutions to Century-Old Challenges
inferred← citeshttps://doi.org/10.1016/j.biosystems.2021.104502openalex-snapshot
Spatial waves and temporal oscillations in vertebrate limb development
inferred← citeshttps://doi.org/10.1016/j.bpj.2019.07.009openalex-snapshot
Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo
inferred← citeshttps://doi.org/10.1016/j.cdev.2021.203722openalex-snapshot
The early Drosophila embryo as a model system for quantitative biology
inferred← citeshttps://doi.org/10.1016/j.cels.2018.02.008openalex-snapshot
Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors
inferred← citeshttps://doi.org/10.1016/j.cois.2018.07.011openalex-snapshot
Evolution of maternal control of axial patterning in insects
inferred← citeshttps://doi.org/10.1016/j.coisb.2018.06.001openalex-snapshot
Landscape, bifurcations, geometry for development
inferred← citeshttps://doi.org/10.1016/j.cub.2023.04.005openalex-snapshot
Precisely timed regulation of enhancer activity defines the binary expression pattern of Fushi tarazu in the Drosophila embryo
inferred← citeshttps://doi.org/10.1016/j.cub.2023.06.060openalex-snapshot
A bistable autoregulatory module in the developing embryo commits cells to binary expression fates
inferred← citeshttps://doi.org/10.1016/j.semcdb.2020.07.010openalex-snapshot
Cell sorting and morphogenesis in early Drosophila embryos
inferred← citeshttps://doi.org/10.1016/j.ydbio.2019.01.006openalex-snapshot
Quantitative analysis reveals genotype- and domain- specific differences between mRNA and protein expression of segmentation genes in Drosophila
inferred← citeshttps://doi.org/10.1016/j.ydbio.2021.02.006openalex-snapshot
A conserved role for arrow in posterior axis patterning across Arthropoda
inferred← citeshttps://doi.org/10.1016/j.ydbio.2022.02.005openalex-snapshot
Evolutionarily conserved function of the even-skipped ortholog in insects revealed by gene knock-out analyses in Gryllus bimaculatus
inferred← citeshttps://doi.org/10.1038/s41467-021-24014-xopenalex-snapshot
Model-based prediction of spatial gene expression via generative linear mapping
inferred← citeshttps://doi.org/10.1038/s41467-023-38033-3openalex-snapshot
Robustness and innovation in synthetic genotype networks
inferred← citeshttps://doi.org/10.1038/s41598-022-09874-7openalex-snapshot
Dynamics of maternal gene expression in Rhodnius prolixus
inferred← citeshttps://doi.org/10.1038/s42003-025-08335-xopenalex-snapshot
Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution
inferred← citeshttps://doi.org/10.1038/s44320-025-00148-8openalex-snapshot
A tool for modeling gene regulatory networks (GRN_modeler) and its applications to synthetic biology
inferred← citeshttps://doi.org/10.1073/pnas.1702478114openalex-snapshot
Speed regulation of genetic cascades allows for evolvability in the body plan specification of insects
inferred← citeshttps://doi.org/10.1073/pnas.2318229121openalex-snapshot
Temporal control of RNAi reveals both robust and labile feedback loops in the segmentation clock of the red flour beetle
inferred← citeshttps://doi.org/10.1089/cmb.2019.0098openalex-snapshot
Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges
inferred← citeshttps://doi.org/10.1093/biomtc/ujag046openalex-snapshot
LLOT: application of Laplacian Linear Optimal Transport in spatial transcriptome reconstruction
inferred← citeshttps://doi.org/10.1093/icb/icad050openalex-snapshot
The Impact of Whole Genome Duplication on the Evolution of the Arachnids
inferred← citeshttps://doi.org/10.1093/molbev/msab088openalex-snapshot
The Evolution of Sox Gene Repertoires and Regulation of Segmentation in Arachnids
inferred← citeshttps://doi.org/10.1098/rsfs.2020.0049openalex-snapshot
Time and space in segmentation
inferred← citeshttps://doi.org/10.1098/rsfs.2021.0007openalex-snapshot
Homology of process: developmental dynamics in comparative biology
inferred← citeshttps://doi.org/10.1101/2021.03.23.436706openalex-snapshot
Nasonia segmentation is regulated by an ancestral insect segmentation regulatory network also present in flies
inferred← citeshttps://doi.org/10.1101/2022.09.27.509025openalex-snapshot
Regulating the timing of enhancer transitions is key to defining sharp boundaries of Fushi tarazu expression in the Drosophila embryo
inferred← citeshttps://doi.org/10.1101/2023.10.15.562380openalex-snapshot
Temporal restriction of RNAi reveals breakdown of the segmentation clock is reversible after knock down of primary pair rule genes but not Wnt-signaling in the red flour beetle
inferred← citeshttps://doi.org/10.1101/2025.01.13.632851openalex-snapshot
Breaking anterior-posterior symmetry in the moth fly Clogmia albipunctata
inferred← citeshttps://doi.org/10.1101/2025.10.28.684994openalex-snapshot
homie and nhomie insulators compete with each other for interaction with distant copies, affecting enhancer-promoter interactions and eve function
inferred← citeshttps://doi.org/10.1101/213025openalex-snapshot
An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis
inferred← citeshttps://doi.org/10.1101/261891openalex-snapshot
Speed Regulation and Gradual Enhancer Switching Models as Flexible and Evolvable Patterning Mechanisms
inferred← citeshttps://doi.org/10.1101/579342openalex-snapshot
The multicellular incoherent feedforward loop motif generates spatial patterns
inferred← citeshttps://doi.org/10.1101/cshperspect.a041520openalex-snapshot
The Mechanics of Building Functional Organs
inferred← citeshttps://doi.org/10.1111/evo.13911openalex-snapshot
Evolution of larval segment position across 12 Drosophila species*
inferred← citeshttps://doi.org/10.1186/s12862-018-1293-zopenalex-snapshot
Growth zone segmentation in the milkweed bug Oncopeltus fasciatus sheds light on the evolution of insect segmentation
inferred← citeshttps://doi.org/10.1186/s41065-018-0067-3openalex-snapshot
Seeing is believing: the Bicoid protein reveals its path
inferred← citeshttps://doi.org/10.1242/dev.154039openalex-snapshot
Conservation and variation in pair-rule gene expression and function in the intermediate-germ beetle Dermestes maculatus
inferred← citeshttps://doi.org/10.1242/dev.155325openalex-snapshot
Suppression of epithelial folding at actomyosin-enriched compartment boundaries downstream of Wingless signalling in Drosophila
inferred← citeshttps://doi.org/10.1242/dev.155580openalex-snapshot
Evidence for the temporal regulation of insect segmentation by a conserved sequence of transcription factors
inferred← citeshttps://doi.org/10.1242/dev.199632openalex-snapshot
The Nasonia pair-rule gene regulatory network retains its function over 300 million years of evolution
inferred← citeshttps://doi.org/10.1371/journal.pbio.2003174openalex-snapshot
A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila
inferred← citeshttps://doi.org/10.1371/journal.pbio.2005093openalex-snapshot
A revised understanding of Tribolium morphogenesis further reconciles short and long germ development
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000064openalex-snapshot
Modeling Edar expression reveals the hidden dynamics of tooth signaling center patterning
inferred← citeshttps://doi.org/10.1371/journal.pbio.3003896openalex-snapshot
Asymmetric chromatin accessibility underlies anterior-posterior axis specification in moth fly embryos
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008589openalex-snapshot
Implications of diffusion and time-varying morphogen gradients for the dynamic positioning and precision of bistable gene expression boundaries
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009812openalex-snapshot
Patterning with clocks and genetic cascades: Segmentation and regionalization of vertebrate versus insect body plans
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011940openalex-snapshot
Chromatin insulators homie and nhomie can interact with distant copies either together or separately, with distinct outcomes for enhancer-promoter interactions
inferred← citeshttps://doi.org/10.15252/msb.20199361openalex-snapshot
Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch
inferred← citeshttps://doi.org/10.1534/genetics.118.300995openalex-snapshot
Developmental Bias and Evolution: A Regulatory Network Perspective
inferred← citeshttps://doi.org/10.20868/upm.thesis.69345openalex-snapshot
Modelado computacional de la autoorganización espacial generada por circuitos genéticos multicelulares
inferred← citeshttps://doi.org/10.2139/ssrn.7601368openalex-snapshot
Embryonic development and reproductive biology of Hyalella azteca: establishing a freshwater crustacean model
inferred← citeshttps://doi.org/10.3389/fcell.2021.695135openalex-snapshot
Development of the Pre-gnathal Segments in the Milkweed Bug Oncopeltus fasciatus Suggests They Are Not Serial Homologs of Trunk Segments
inferred← citeshttps://doi.org/10.3390/e24050735openalex-snapshot
Information Fragmentation, Encryption and Information Flow in Complex Biological Networks
inferred← citeshttps://doi.org/10.3390/life11111232openalex-snapshot
Application of Domain- and Genotype-Specific Models to Infer Post-Transcriptional Regulation of Segmentation Gene Expression in Drosophila
inferred← citeshttps://doi.org/10.3390/sym15081490openalex-snapshot
Striped Expression of Leucine-Rich Repeat Proteins Coordinates Cell Intercalation and Compartment Boundary Formation in the Early Drosophila Embryo
inferred← citeshttps://doi.org/10.35537/10915/90493openalex-snapshot
Genómica del desarrollo embrionario de Rhodnius prolixus
inferred← citeshttps://doi.org/10.53846/goediss-8229openalex-snapshot
Investigating the Re-initiation of Segmentation with Temporally Restricted RNAi in Tribolium castaneum
inferred← citeshttps://doi.org/10.64898/2026.06.30.735526openalex-snapshot
Morphospace analysis reveals divergent cellular behaviours driving tissue internalisation during insect gastrulation
inferred← citeshttps://doi.org/10.70675/50757190zb2d8z4fc2zbc96zfea34ff0071copenalex-snapshot
Dose et cofacteurs des protéines Hox lors du développement des organes de vol chez les insectes
inferred← citeshttps://doi.org/10.7554/elife.37567openalex-snapshot
A SoxB gene acts as an anterior gap gene and regulates posterior segment addition in a spider
inferred← citeshttps://doi.org/10.7554/elife.39748openalex-snapshot
The mlpt/Ubr3/Svb module comprises an ancient developmental switch for embryonic patterning
inferred← citeshttps://doi.org/10.7554/elife.41208openalex-snapshot
A re-inducible gap gene cascade patterns the anterior–posterior axis of insects in a threshold-free fashion
inferred← citeshttps://doi.org/10.7554/elife.42832openalex-snapshot
Modularity, criticality, and evolvability of a developmental gene regulatory network
inferred← citeshttps://doi.org/10.7554/elife.55778openalex-snapshot
Geometric models for robust encoding of dynamical information into embryonic patterns
inferred← citeshttps://doi.org/10.7554/elife.72369openalex-snapshot
Correct regionalization of a tissue primordium is essential for coordinated morphogenesis
inferred← citeshttps://doi.org/10.7554/elife.72666openalex-snapshot
Ecdysone coordinates plastic growth with robust pattern in the developing wing
inferred← citeshttps://doi.org/10.7554/elife.78902openalex-snapshot
A timer gene network is spatially regulated by the terminal system in the Drosophila embryo
inferred← citeshttps://doi.org/10.7554/elife.84969openalex-snapshot
How enhancers regulate wavelike gene expression patterns
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