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Automatic sorting system for large calcium imaging data

https://doi.org/10.1101/215145
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.neunet.2014.03.007openalex-snapshot
Detecting cells using non-negative matrix factorization on calcium imaging data
inferredcites →https://doi.org/10.1016/j.neuron.2009.08.009openalex-snapshot
Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data
inferredcites →https://doi.org/10.1016/j.neuron.2015.08.036openalex-snapshot
Entorhinal Cortical Ocean Cells Encode Specific Contexts and Drive Context-Specific Fear Memory
inferredcites →https://doi.org/10.1016/j.neuron.2015.11.037openalex-snapshot
Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data
inferredcites →https://doi.org/10.1016/j.neuron.2016.04.014openalex-snapshot
Benchmarking Spike Rate Inference in Population Calcium Imaging
inferredcites →https://doi.org/10.1038/nature12354openalex-snapshot
Ultrasensitive fluorescent proteins for imaging neuronal activity
inferredcites →https://doi.org/10.1038/nm.2292openalex-snapshot
Time-lapse imaging of disease progression in deep brain areas using fluorescence microendoscopy
inferredcites →https://doi.org/10.1038/nmeth.1453openalex-snapshot
High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision
inferredcites →https://doi.org/10.1038/nmeth.1694openalex-snapshot
Miniaturized integration of a fluorescence microscope
inferredcites →https://doi.org/10.1038/nmeth.2434openalex-snapshot
Whole-brain functional imaging at cellular resolution using light-sheet microscopy
inferredcites →https://doi.org/10.1038/nmeth.2964openalex-snapshot
Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy
inferredcites →https://doi.org/10.1038/nn.2620openalex-snapshot
Parallel processing of visual space by neighboring neurons in mouse visual cortex
inferredcites →https://doi.org/10.1038/nn.3329openalex-snapshot
Long-term dynamics of CA1 hippocampal place codes
inferredcites →https://doi.org/10.1088/1741-2560/10/4/046017openalex-snapshot
A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging
inferredcites →https://doi.org/10.1109/acssc.2013.6810293openalex-snapshot
Bayesian spike inference from calcium imaging data
inferredcites →https://doi.org/10.1109/mcse.2010.149openalex-snapshot
2D Principal Component Analysis for Face and Facial-Expression Recognition
inferredcites →https://doi.org/10.1109/mcse.2011.37openalex-snapshot
The NumPy Array: A Structure for Efficient Numerical Computation
inferredcites →https://doi.org/10.1137/080716542openalex-snapshot
A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems
inferredcites →https://doi.org/10.1152/jn.01073.2009openalex-snapshot
Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging
inferredcites →https://doi.org/10.1214/18-aoas1162openalex-snapshot
Exact spike train inference via $\ell_{0}$ optimization
inferredcites →https://doi.org/10.25080/majora-7b98e3ed-013openalex-snapshot
Dask: Parallel Computation with Blocked algorithms and Task Scheduling
inferredcites →https://doi.org/10.3389/fncir.2013.00151openalex-snapshot
Three-dimensional mapping of microcircuit correlation structure
inferredcites →https://doi.org/10.7717/peerj.453openalex-snapshot
scikit-image: image processing in Python

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-0716-2321-3_10openalex-snapshot
Miniature Microscopy of Hippocampal CA1 to Identify Engram Cells and Record Calcium Transients for Analyses of Ensemble Activities
inferred← citeshttps://doi.org/10.1016/b978-0-323-85796-3.00014-7openalex-snapshot
Machine learning data processing as a bridge between microscopy and the brain
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.107864openalex-snapshot
Distinct Mechanisms of Over-Representation of Landmarks and Rewards in the Hippocampus
inferred← citeshttps://doi.org/10.1016/j.conb.2018.11.004openalex-snapshot
Analysis pipelines for calcium imaging data
inferred← citeshttps://doi.org/10.1038/s41467-019-10683-2openalex-snapshot
Orchestrated ensemble activities constitute a hippocampal memory engram
inferred← citeshttps://doi.org/10.1038/s41467-024-48816-xopenalex-snapshot
Prefrontal coding of learned and inferred knowledge during REM and NREM sleep
inferred← citeshttps://doi.org/10.1038/s41467-025-58860-wopenalex-snapshot
Parallel processing of past and future memories through reactivation and synaptic plasticity mechanisms during sleep
inferred← citeshttps://doi.org/10.1038/s42003-022-04167-1openalex-snapshot
A short-term memory trace persists for days in the mouse hippocampus
inferred← citeshttps://doi.org/10.1073/pnas.2201578119openalex-snapshot
Selective engram coreactivation in idling brain inspires implicit learning
inferred← citeshttps://doi.org/10.1101/2022.04.05.487077openalex-snapshot
HOTARU: Automatic sorting system for large-scale calcium imaging data
inferred← citeshttps://doi.org/10.1101/266767openalex-snapshot
Dynamic embedding of salience coding in hippocampal spatial maps
inferred← citeshttps://doi.org/10.1117/1.nph.11.3.033406openalex-snapshot
Multiphoton imaging of hippocampal neural circuits: techniques and biological insights into region-, cell-type-, and pathway-specific functions
inferred← citeshttps://doi.org/10.1186/s13041-020-0547-zopenalex-snapshot
Pcdhβ deficiency affects hippocampal CA1 ensemble activity and contextual fear discrimination
inferred← citeshttps://doi.org/10.1186/s13041-025-01230-wopenalex-snapshot
The medial prefrontal cortex encodes procedural rules as sequential neuronal activity dynamics
inferred← citeshttps://doi.org/10.1523/jneurosci.0208-21.2021openalex-snapshot
Modality-Specific Impairment of Hippocampal CA1 Neurons of Alzheimer’s Disease Model Mice
inferred← citeshttps://doi.org/10.3902/jnns.27.74openalex-snapshot
Guide for Ca2+ Imaging from Deep Brain Regions
inferred← citeshttps://doi.org/10.53846/goediss-8733openalex-snapshot
Drift and stabilization of cortical response selectivity
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