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Within-host dynamics explain patterns of antibiotic resistance in commensal bacteria

https://doi.org/10.1101/217232
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular diversity of Escherichia coli in the human gut: New ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohnʼs disease
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Epidemiologic interference of virus populations
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A Markov Chain Monte Carlo version of the genetic algorithm Differential Evolution: easy Bayesian computing for real parameter spaces
inferredcites →https://doi.org/10.1016/j.epidem.2008.07.001openalex-snapshot
No coexistence for free: Neutral null models for multistrain pathogens
inferredcites →https://doi.org/10.1016/j.mib.2006.07.002openalex-snapshot
The biological cost of mutational antibiotic resistance: any practical conclusions?
inferredcites →https://doi.org/10.1016/s0140-6736(04)16357-5openalex-snapshot
Colonisation by Streptococcus pneumoniae and Staphylococcus aureus in healthy children
inferredcites →https://doi.org/10.1016/s1473-3099(17)30478-4openalex-snapshot
Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance
inferredcites →https://doi.org/10.1017/s0950268812001057openalex-snapshot
Antimicrobial resistance to benzylpenicillin in invasive pneumococcal disease in Belgium, 2003–2010: the effect of altering clinical breakpoints
inferredcites →https://doi.org/10.1038/27900openalex-snapshot
Adaptive radiation in a heterogeneous environment
inferredcites →https://doi.org/10.1038/380240a0openalex-snapshot
The rock–paper–scissors game and the evolution of alternative male strategies
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Dense genomic sampling identifies highways of pneumococcal recombination
inferredcites →https://doi.org/10.1038/nrmicro2319openalex-snapshot
Antibiotic resistance and its cost: is it possible to reverse resistance?
inferredcites →https://doi.org/10.1073/pnas.0602138103openalex-snapshot
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients
inferredcites →https://doi.org/10.1073/pnas.1018249108openalex-snapshot
Evolutionary dynamics of bacteria in a human host environment
inferredcites →https://doi.org/10.1073/pnas.111162598openalex-snapshot
Negative frequency-dependent selection maintains a dramatic flower color polymorphism in the rewardless orchid Dactylorhiza sambucina (L.) Soò
inferredcites →https://doi.org/10.1073/pnas.1617849114openalex-snapshot
Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
inferredcites →https://doi.org/10.1073/pnas.94.12.6571openalex-snapshot
Vaccination against colonizing bacteria with multiple serotypes
inferredcites →https://doi.org/10.1073/pnas.96.3.1152openalex-snapshot
The relationship between the volume of antimicrobial consumption in human communities and the frequency of resistance
inferredcites →https://doi.org/10.1086/533475openalex-snapshot
Duration of Stool Colonization in Patients Infected with Extended‐Spectrum β‐Lactamase–ProducingEscherichia coliandKlebsiella pneumoniae
inferredcites →https://doi.org/10.1093/comjnl/7.4.308openalex-snapshot
A Simplex Method for Function Minimization
inferredcites →https://doi.org/10.1098/rsif.2009.0400openalex-snapshot
What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae ?
inferredcites →https://doi.org/10.1098/rsif.2017.0295openalex-snapshot
Host population structure and treatment frequency maintain balancing selection on drug resistance
inferredcites →https://doi.org/10.1098/rspb.1994.0075openalex-snapshot
Theoretical studies of the effects of heterogeneity in the parasite population on the transmission dynamics of malaria
inferredcites →https://doi.org/10.1098/rspb.2013.1939openalex-snapshot
The impact of specific and non-specific immunity on the ecology of Streptococcus pneumoniae and the implications for vaccination
inferredcites →https://doi.org/10.1099/jmm.0.025841-0openalex-snapshot
Simultaneous carriage of multiple genotypes of Staphylococcus aureus in children
inferredcites →https://doi.org/10.1126/science.1215947openalex-snapshot
Niche and Neutral Effects of Acquired Immunity Permit Coexistence of Pneumococcal Serotypes
inferredcites →https://doi.org/10.1126/science.131.3409.1292openalex-snapshot
The Competitive Exclusion Principle
inferredcites →https://doi.org/10.1126/science.171.3973.820openalex-snapshot
Competition between Species: Frequency Dependence
inferredcites →https://doi.org/10.1128/aac.00171-12openalex-snapshot
Duration of Stool Colonization in Healthy Medical Students with Extended-Spectrum-β-Lactamase-Producing Escherichia coli
inferredcites →https://doi.org/10.1128/jcm.00157-11openalex-snapshot
Improved Detection of Nasopharyngeal Cocolonization by Multiple Pneumococcal Serotypes by Use of Latex Agglutination or Molecular Serotyping by Microarray
inferredcites →https://doi.org/10.1146/annurev.es.05.110174.000555openalex-snapshot
Frequency-Dependent Selection
inferredcites →https://doi.org/10.1186/1471-2334-14-177openalex-snapshot
Natural history of colonization with methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant Enterococcus(VRE): a systematic review
inferredcites →https://doi.org/10.1186/s12879-015-0980-2openalex-snapshot
High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children
inferredcites →https://doi.org/10.3109/00365548.2011.562530openalex-snapshot
Duration of methicillin-resistant Staphylococcus aureus colonization after diagnosis: A four-year experience from southern Sweden

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/s2214-109x(18)30043-3openalex-snapshot
Vaccination to reduce antimicrobial resistance
inferred← citeshttps://doi.org/10.1073/pnas.1810840115openalex-snapshot
Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora
inferred← citeshttps://doi.org/10.1093/infdis/jiy344openalex-snapshot
Balancing Benefits and Risks of Antibiotic Use
inferred← citeshttps://doi.org/10.1111/eva.12753openalex-snapshot
Evolutionary epidemiology models to predict the dynamics of antibiotic resistance
inferred← citeshttps://doi.org/10.1128/mbio.00644-19openalex-snapshot
Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection
inferred← citeshttps://doi.org/10.1371/journal.ppat.1007763openalex-snapshot
On the evolutionary ecology of multidrug resistance in bacteria
inferred← citeshttps://doi.org/10.3410/f.735599721.793559407openalex-snapshot
Faculty Opinions recommendation of Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection.
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