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Genetic dissection of an ancient divergence in yeast thermotolerance

https://doi.org/10.1101/220913

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Genome‐Wide Fitness and Genetic Interactions Determined by Tn‐seq, a High‐Throughput Massively Parallel Sequencing Method for Microorganisms

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A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations

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Identification of loci that cause phenotypic variation in diverse species with the reciprocal hemizygosity test

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The genetics of species differences

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Sympatric natural and populations have different thermal growth profiles

inferredcites →https://doi.org/10.1021/acssynbio.6b00264openalex-snapshot

Quantitative Trait Loci (QTL)-Guided Metabolic Engineering of a Complex Trait

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A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly

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Finding the molecular basis of quatitative traits: successes and pitfalls

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Dissecting the architecture of a quantitative trait locus in yeast

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piggyBac can bypass DNA synthesis during cut and paste transposition

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Population genomics of domestic and wild yeasts

inferredcites →https://doi.org/10.1038/nature16938openalex-snapshot

Polygenic evolution of a sugar specialization trade-off in yeast

inferredcites →https://doi.org/10.1038/nature24287openalex-snapshot

The dynamics of molecular evolution over 60,000 generations

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nrg3522openalex-snapshot

Ecological genomics of local adaptation

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Genetic mapping of species differences via in vitro crosses in mouse embryonic stem cells

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The Sequence Alignment/Map format and SAMtools

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An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL.

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/nar/24.13.2519openalex-snapshot

A new efficient gene disruption cassette for repeated use in budding yeast

inferredcites →https://doi.org/10.1101/gr.116731.110openalex-snapshot

Revealing the genetic structure of a trait by sequencing a population under selection

inferredcites →https://doi.org/10.1101/gr.155762.113openalex-snapshot

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

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Neurological Disorders: Public Health Challenges

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Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis

inferredcites →https://doi.org/10.1126/science.aai7825openalex-snapshot

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability

inferredcites →https://doi.org/10.1128/aem.01861-10openalex-snapshot

Temperature Adaptation Markedly Determines Evolution within the Genus Saccharomyces

inferredcites →https://doi.org/10.1128/br.38.2.164-198.1974openalex-snapshot

Saccharomyces cerevisiae cell cycle

inferredcites →https://doi.org/10.1128/mbio.00306-15openalex-snapshot

Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons

inferredcites →https://doi.org/10.1146/annurev-ecolsys-110512-135828openalex-snapshot

Genomics and the Evolution of Phenotypic Traits

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webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

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High-Resolution Genome-Wide Dissection of the Two Rules of Speciation in Drosophila

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Complex Genetic Interactions in a Quantitative Trait Locus

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A Screen for Recessive Speciation Genes Expressed in the Gametes of F1 Hybrid Yeast

inferredcites →https://doi.org/10.1371/journal.pone.0020739openalex-snapshot

Evidence for Divergent Evolution of Growth Temperature Preference in Sympatric Saccharomyces Species

inferredcites →https://doi.org/10.1534/g3.111.000273openalex-snapshot

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for theSaccharomyces sensu strictoGenus

inferredcites →https://doi.org/10.1534/genetics.113.155341openalex-snapshot

Rare Variants in Hypermutable Genes Underlie Common Morphology and Growth Traits in WildSaccharomyces paradoxus

inferredcites →https://doi.org/10.1534/genetics.113.160291openalex-snapshot

An Evaluation of High-Throughput Approaches to QTL Mapping in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.7312/nei-92038openalex-snapshot

Molecular Evolutionary Genetics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/476929openalex-snapshot

Laboratory evolution of a Saccharomyces cerevisiae x S. eubayanus hybrid under simulated lager-brewing conditions: genetic diversity and phenotypic convergence

inferred← citeshttps://doi.org/10.1126/sciadv.aav1848openalex-snapshot

Mitochondria-encoded genes contribute to evolution of heat and cold tolerance in yeast

inferred← citeshttps://doi.org/10.1371/journal.pgen.1008383openalex-snapshot

Temperature preference can bias parental genome retention during hybrid evolution

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