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Laboratory evolution of a Saccharomyces cerevisiae x S. eubayanus hybrid under simulated lager-brewing conditions: genetic diversity and phenotypic convergence

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A Comprehensive History of Beer Brewing

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Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium

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Maltotriose utilization in lager yeast strains: MTT1 encodes a maltotriose transporter

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Comparative physiology and fermentation performance of Saaz and Frohberg lager yeast strains and the parental species Saccharomyces eubayanus

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Saccharomyces pastorianus: genomic insights inspiring innovation for industry

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Ploidy changes and genome stability in yeast

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Substrate‐accelerated death of Saccharomyces cerevisiae CBS 8066 under maltose stress

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Effect of benzoic acid on metabolic fluxes in yeasts: A continuous‐culture study on the regulation of respiration and alcoholic fermentation

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New heterologous modules for classical or PCR‐based gene disruptions in Saccharomyces cerevisiae

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Alternative Saccharomyces interspecies hybrid combinations and their potential for low‐temperature wort fermentation

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The hybrid genomes of Saccharomyces pastorianus : A current perspective

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Newly generated interspecific wine yeast hybrids introduce flavour and aroma diversity to wines

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Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation

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Novel brewing yeast hybrids: creation and application

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Elevated recombination rates in transcriptionally active DNA

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S. cerevisiae genes IRA1 and IRA2 encode proteins that may be functionally equivalent to mammalian ras GTPase activating protein

inferredcites →https://doi.org/10.1016/0378-1119(89)90424-1openalex-snapshot

Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor

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Identification of Aneuploidy-Tolerating Mutations

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Evolutionary engineering to enhance starter culture performance in food fermentations

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The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

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Characterization of flocculent Saccharomyces interspecific hybrids for the production of sparkling wines

inferredcites →https://doi.org/10.1016/j.gde.2015.07.003openalex-snapshot

The genomics of microbial domestication in the fermented food environment

inferredcites →https://doi.org/10.1016/j.tifs.2009.10.008openalex-snapshot

Brewer's Saccharomyces yeast biomass: characteristics and potential applications

inferredcites →https://doi.org/10.1016/j.tig.2013.01.002openalex-snapshot

Saccharomyces diversity and evolution: a budding model genus

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Genetic identification of Saccharomyces bayanus var. uvarum, a cider-fermenting yeast

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Engineering evolution to study speciation in yeasts

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Integrative genomics viewer

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

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Short- and long-term effects of chromosome mis-segregation and aneuploidy

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Genetic dissection of interspecific differences in yeast thermotolerance

inferredcites →https://doi.org/10.1073/pnas.072660299openalex-snapshot

Conflicting levels of selection in the accumulation of mitochondrial defects in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1073/pnas.1012544108openalex-snapshot

Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1073/pnas.1105430108openalex-snapshot

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

inferredcites →https://doi.org/10.1073/pnas.1211150109openalex-snapshot

Chromosomal duplication is a transient evolutionary solution to stress

inferredcites →https://doi.org/10.1073/pnas.1305949110openalex-snapshot

Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1073/pnas.242624799openalex-snapshot

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1073/pnas.88.2.468openalex-snapshot

IRA2, an upstream negative regulator of RAS in yeast, is a RAS GTPase-activating protein.

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/dnares/dsv037openalex-snapshot

Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization

inferredcites →https://doi.org/10.1093/femsyr/fov005openalex-snapshot

S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond

inferredcites →https://doi.org/10.1093/femsyr/fov067openalex-snapshot

Diversity and adaptive evolution of Saccharomyces wine yeast: a review

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Recombination Sites on Hybrid Chromosomes in S. pastorianus share Common Sequence Motifs and define a Complex Evolutionary Relationship between Group I and II Lager Yeasts

inferredcites →https://doi.org/10.1093/femsyr/fox074openalex-snapshot

Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D

inferredcites →https://doi.org/10.1093/femsyr/foy075openalex-snapshot

Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains

inferredcites →https://doi.org/10.1093/genetics/129.2.343openalex-snapshot

Analysis of a circular derivative of Saccharomyces cerevisiae chromosome III: a physical map and identification and location of ARS elements.

inferredcites →https://doi.org/10.1093/molbev/msx098openalex-snapshot

Loss of Heterozygosity Drives Adaptation in Hybrid Yeast

inferredcites →https://doi.org/10.1099/ijsem.0.002013openalex-snapshot

Saccharomyces jurei sp. nov., isolation and genetic identification of a novel yeast species from Quercus robur

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Genetic dissection of an ancient divergence in yeast thermotolerance

inferredcites →https://doi.org/10.1101/397984openalex-snapshot

Allele-specific genome editing using CRISPR-Cas9 causes off-target mutations in diploid yeast

inferredcites →https://doi.org/10.1101/452748openalex-snapshot

Fitness Benefits of Loss of Heterozygosity in Saccharomyces Hybrids

inferredcites →https://doi.org/10.1101/gr.121285.111openalex-snapshot

Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution

inferredcites →https://doi.org/10.1111/1567-1364.12024openalex-snapshot

amdSYM, a new dominant recyclable marker cassette forSaccharomyces cerevisiae

inferredcites →https://doi.org/10.1111/1574-6976.12073openalex-snapshot

Improving industrial yeast strains: exploiting natural and artificial diversity

inferredcites →https://doi.org/10.1111/j.1472-765x.2008.02360.xopenalex-snapshot

Petite mutation in aged and oxidatively stressed ale and lager brewing yeast

inferredcites →https://doi.org/10.1111/j.1567-1364.2006.00126.xopenalex-snapshot

Natural hybrids fromSaccharomyces cerevisiae,Saccharomyces bayanusandSaccharomyces kudriavzeviiin wine fermentations

inferredcites →https://doi.org/10.1111/j.1567-1364.2008.00369.xopenalex-snapshot

Interspecies hybridization and recombination inSaccharomyceswine yeasts

inferredcites →https://doi.org/10.1111/j.1574-6968.2008.01480.xopenalex-snapshot

The complex and dynamic genomes of industrial yeasts

inferredcites →https://doi.org/10.1111/j.1574-6976.2007.00076.xopenalex-snapshot

Yeast responses to stresses associated with industrial brewery handling: Figure 1

inferredcites →https://doi.org/10.1126/science.1142210openalex-snapshot

Effects of Aneuploidy on Cellular Physiology and Cell Division in Haploid Yeast

inferredcites →https://doi.org/10.1126/science.1206412openalex-snapshot

Aneuploidy Drives Genomic Instability in Yeast

inferredcites →https://doi.org/10.1126/science.277.5330.1259openalex-snapshot

Yeast as a Model Organism

inferredcites →https://doi.org/10.1128/aem.01263-15openalex-snapshot

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains

inferredcites →https://doi.org/10.1128/aem.01558-08openalex-snapshot

Improved Fermentation Performance of a Lager Yeast after Repair of Its AGT1 Maltose and Maltotriose Transporter Genes

inferredcites →https://doi.org/10.1128/aem.02268-08openalex-snapshot

Novel Evolutionary Engineering Approach for Accelerated Utilization of Glucose, Xylose, and Arabinose Mixtures by Engineered Saccharomyces cerevisiae Strains

inferredcites →https://doi.org/10.1128/aem.02570-07openalex-snapshot

Molecular Analysis of Maltotriose Active Transport and Fermentation by Saccharomyces cerevisiae Reveals a Determinant Role for the AGT1 Permease

inferredcites →https://doi.org/10.1128/aem.03206-16openalex-snapshot

Industrial Relevance of Chromosomal Copy Number Variation in Saccharomyces Yeasts

inferredcites →https://doi.org/10.1128/aem.63.1.7-12.1997openalex-snapshot

Mitochondrial DNA loss caused by ethanol in Saccharomyces flor yeasts

inferredcites →https://doi.org/10.1128/aem.70.4.1956-1963.2004openalex-snapshot

Prolonged Maltose-Limited Cultivation of Saccharomyces cerevisiae Selects for Cells with Improved Maltose Affinity and Hypersensitivity

inferredcites →https://doi.org/10.1128/aem.71.9.5044-5049.2005openalex-snapshot

Maltotriose Utilization by Industrial Saccharomyces Strains: Characterization of a New Member of the α-Glucoside Transporter Family

inferredcites →https://doi.org/10.1128/mcb.16.11.6110openalex-snapshot

The Mismatch Repair System Reduces Meiotic Homeologous Recombination and Stimulates Recombination-Dependent Chromosome Loss

inferredcites →https://doi.org/10.1159/000084937openalex-snapshot

Hybrid genome evolution by transposition

inferredcites →https://doi.org/10.1186/1475-2859-11-36openalex-snapshot

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

inferredcites →https://doi.org/10.1186/s12934-017-0835-1openalex-snapshot

CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus

inferredcites →https://doi.org/10.1186/s13068-016-0583-1openalex-snapshot

A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations

inferredcites →https://doi.org/10.1186/s13068-017-0763-7openalex-snapshot

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

inferredcites →https://doi.org/10.1201/9780203024195openalex-snapshot

Brewing

inferredcites →https://doi.org/10.1371/journal.pgen.1003366openalex-snapshot

Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression

inferredcites →https://doi.org/10.1371/journal.pgen.1003836openalex-snapshot

Chimeric Protein Complexes in Hybrid Species Generate Novel Phenotypes

inferredcites →https://doi.org/10.1371/journal.pgen.1005635openalex-snapshot

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

inferredcites →https://doi.org/10.1371/journal.pgen.1007853openalex-snapshot

In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation

inferredcites →https://doi.org/10.1371/journal.pgen.1008383openalex-snapshot

Temperature preference can bias parental genome retention during hybrid evolution

inferredcites →https://doi.org/10.1371/journal.pone.0003647openalex-snapshot

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

inferredcites →https://doi.org/10.1371/journal.pone.0092203openalex-snapshot

Sequencing and Characterisation of Rearrangements in Three S. pastorianus Strains Reveals the Presence of Chimeric Genes and Gives Evidence of Breakpoint Reuse

inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.1534/g3.113.010090openalex-snapshot

Genome Sequence of Saccharomyces carlsbergensis, the World’s First Pure Culture Lager Yeast

inferredcites →https://doi.org/10.1534/genetics.106.062166openalex-snapshot

Sequence Diversity, Reproductive Isolation and Species Concepts in Saccharomyces

inferredcites →https://doi.org/10.1534/genetics.107.071506openalex-snapshot

Estimating the Per-Base-Pair Mutation Rate in the Yeast Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1534/genetics.116.198895openalex-snapshot

Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast

inferredcites →https://doi.org/10.2436/20.1501.01.224openalex-snapshot

Stabilization process in Saccharomyces intra and interspecific hybrids in fermentative conditions.

inferredcites →https://doi.org/10.3389/fmicb.2017.01690openalex-snapshot

Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast

inferredcites →https://doi.org/10.3389/fmicb.2018.01786openalex-snapshot

Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T

inferredcites →https://doi.org/10.4161/cc.1.2.110openalex-snapshot

Butyrolactone: More than a Kinase Inhibitor?

inferredcites →https://doi.org/10.4161/cc.1.2.114openalex-snapshot

Improved Flow Cytometric Analysis of the Budding Yeast Cell Cycle

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2020.12.01.404830openalex-snapshot

No evidence for whole-chromosome dosage compensation or global transcriptomic expression differences in spontaneously-aneuploid mutation accumulation lines of Saccharomyces cerevisiae

inferred← citeshttps://doi.org/10.1101/679563openalex-snapshot

Maltotriose consumption by hybrid Saccharomyces pastorianus is heterotic and results from regulatory cross-talk between parental sub-genomes

inferred← citeshttps://doi.org/10.1186/s12864-019-6263-3openalex-snapshot

Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization

inferred← citeshttps://doi.org/10.1371/journal.pgen.1008037openalex-snapshot

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast

inferred← citeshttps://doi.org/10.3389/fgene.2019.00242openalex-snapshot

Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions

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