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Host shifts result in parallel genetic changes when viruses evolve in closely related species
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Evolution of Canine Parvovirus Involved Loss and Gain of Feline Host Range
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Cleavage sites of the “P3 region” in the nonstructural polyprotein precursor of a dicistrovirus
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Human Adaptation of Ebola Virus during the West African Outbreak
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Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic
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Tetherin-Driven Adaptation of Vpu and Nef Function and the Evolution of Pandemic and Nonpandemic HIV-1 Strains
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Emerging pathogens: the epidemiology and evolution of species jumps
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Divergent IRES elements in invertebrates
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Functional analysis of structural motifs in dicistroviruses
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Fruit bats as reservoirs of Ebola virus
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High rate of viral evolution associated with the emergence of carnivore parvovirus
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Phylogenetic signal in plant pathogen–host range
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A Tale of Two Phylogenies: Comparative Analyses of Ecological Interactions
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Inferring Host Range Dynamics from Comparative Data: The Protozoan Parasites of New World Monkeys
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APE: Analyses of Phylogenetics and Evolution in R language
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The Sequence Alignment/Map format and SAMtools
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Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/molbev/msg236openalex-snapshot
Temporal Patterns of Fruit Fly (Drosophila) Evolution Revealed by Mutation Clocks
inferredcites →https://doi.org/10.1093/molbev/msm110openalex-snapshot
Adaptation of HIV-1 to Its Human Host
inferredcites →https://doi.org/10.1093/molbev/msn059openalex-snapshot
Evolutionary Genomics of Host Adaptation in Vesicular Stomatitis Virus
inferredcites →https://doi.org/10.1093/molbev/msn234openalex-snapshot
Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence
inferredcites →https://doi.org/10.1093/molbev/msr314openalex-snapshot
Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mss150openalex-snapshot
Estimating Divergence Dates and Substitution Rates in the Drosophila Phylogeny
inferredcites →https://doi.org/10.1098/rsbl.2012.0290openalex-snapshot
Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication
inferredcites →https://doi.org/10.1098/rspb.2008.0284openalex-snapshot
Phylogeny and geography predict pathogen community similarity in wild primates and humans
inferredcites →https://doi.org/10.1098/rstb.2001.0888openalex-snapshot
Risk factors for human disease emergence
inferredcites →https://doi.org/10.1098/rstb.2001.0889openalex-snapshot
Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence
inferredcites →https://doi.org/10.1098/rstb.2001.0997openalex-snapshot
Emergence of influenza A viruses
inferredcites →https://doi.org/10.1098/rstb.2010.0031openalex-snapshot
The evolution of HIV-1 and the origin of AIDS
inferredcites →https://doi.org/10.1098/rstb.2012.0196openalex-snapshot
Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints
inferredcites →https://doi.org/10.1099/0022-1317-79-1-191openalex-snapshot
The novel genome organization of the insect picorna-like virus Drosophila C virus suggests this virus belongs to a previously undescribed virus family.
inferredcites →https://doi.org/10.1111/1365-2656.12160openalex-snapshot
Phylogenetically related and ecologically similar carnivores harbour similar parasite assemblages
inferredcites →https://doi.org/10.1111/1467-9868.00346openalex-snapshot
A Direct Approach to False Discovery Rates
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb01546.xopenalex-snapshot
INFECTION SUCCESS IN NOVEL HOSTS: AN EXPERIMENTAL AND PHYLOGENETIC STUDY OF DROSOPHILA-PARASITIC NEMATODES
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01878.xopenalex-snapshot
Phylogenetic determinants of potential host shifts in fungal pathogens
inferredcites →https://doi.org/10.1111/j.1461-0248.2012.01858.xopenalex-snapshot
Phylogenetic host specificity and understanding parasite sharing in primates
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00579.xopenalex-snapshot
SPECIALIZATION AND GEOGRAPHIC ISOLATION AMONGWOLBACHIASYMBIONTS FROM ANTS AND LYCAENID BUTTERFLIES
inferredcites →https://doi.org/10.1126/science.1118391openalex-snapshot
Bats Are Natural Reservoirs of SARS-Like Coronaviruses
inferredcites →https://doi.org/10.1126/science.1188836openalex-snapshot
Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats
inferredcites →https://doi.org/10.1126/science.1222526openalex-snapshot
The Potential for Respiratory Droplet–Transmissible A/H5N1 Influenza Virus to Evolve in a Mammalian Host
inferredcites →https://doi.org/10.1128/mmbr.00004-08openalex-snapshot
Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases
inferredcites →https://doi.org/10.1146/annurev.micro.59.030804.121059openalex-snapshot
THE ORIGINS OF NEW PANDEMIC VIRUSES: The Acquisition of New Host Ranges by Canine Parvovirus and Influenza A Viruses
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/1471-2148-7-238openalex-snapshot
Small steps or giant leaps for male-killers? Phylogenetic constraints to male-killer host shifts
inferredcites →https://doi.org/10.1371/journal.pbio.1000002openalex-snapshot
The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pbio.1002210openalex-snapshot
The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1005397openalex-snapshot
Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference
inferredcites →https://doi.org/10.1371/journal.pone.0073833openalex-snapshot
Previous Exposure to an RNA Virus Does Not Protect against Subsequent Infection in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.ppat.1002260openalex-snapshot
Host Phylogeny Determines Viral Persistence and Replication in Novel Hosts
inferredcites →https://doi.org/10.1371/journal.ppat.1004395openalex-snapshot
The Evolution and Genetics of Virus Host Shifts
inferredcites →https://doi.org/10.1371/journal.ppat.1004728openalex-snapshot
The Causes and Consequences of Changes in Virulence following Pathogen Host Shifts
inferredcites →https://doi.org/10.1534/genetics.107.085225openalex-snapshot
Parallel Genetic Evolution Within and Between Bacteriophage Species of Varying Degrees of Divergence
inferredcites →https://doi.org/10.18637/jss.v033.i01openalex-snapshot
Regularization Paths for Generalized Linear Models via Coordinate Descent
inferredcites →https://doi.org/10.2307/2346669openalex-snapshot
Algorithm AS 159: An Efficient Method of Generating Random R × C Tables with Given Row and Column Totals
inferredcites →https://doi.org/10.3201/eid1109.040773openalex-snapshot
Molecular Epidemiology of SARS-associated Coronavirus, Beijing
inferredcites →https://doi.org/10.3201/eid1112.050997openalex-snapshot
Host Range and Emerging and Reemerging Pathogens
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