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The Evolution and Genetics of Virus Host Shifts
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Landscape structure affects temporal dynamics in the bumble bee virome: Landscape heterogeneity supports colony resilience
inferred← citeshttps://doi.org/10.1016/j.tim.2021.02.007openalex-snapshot
Live and Wet Markets: Food Access versus the Risk of Disease Emergence
inferred← citeshttps://doi.org/10.1016/j.virol.2018.12.009openalex-snapshot
Diverse RNA viruses of arthropod origin in the blood of fruit bats suggest a link between bat and arthropod viromes
inferred← citeshttps://doi.org/10.1016/j.virol.2026.110854openalex-snapshot
Fundamental concepts of convergent (parallel) evolution in human-pathogenic viruses and their implications for global health
inferred← citeshttps://doi.org/10.1016/j.virusres.2020.198097openalex-snapshot
On the correct interpretation of similarity index in codon usage studies: Comparison with four other metrics and implications for Zika and West Nile virus
inferred← citeshttps://doi.org/10.1016/j.virusres.2024.199349openalex-snapshot
Do bed bugs transmit human viruses, or do humans spread bed bugs and their viruses? A worldwide survey of the bed bug RNA virosphere
inferred← citeshttps://doi.org/10.1017/s003118201900091xopenalex-snapshot
Population genetics of ectoparasitic mitesVarroaspp. in Eastern and Western honey bees
inferred← citeshttps://doi.org/10.1017/s0031182020001493openalex-snapshot
Comparative genetic diversity ofCryptosporidiumspecies causing human infections
inferred← citeshttps://doi.org/10.1038/hdy.2016.71openalex-snapshot
Heritable symbionts in a world of varying temperature
inferred← citeshttps://doi.org/10.1038/nature22975openalex-snapshot
Host and viral traits predict zoonotic spillover from mammals
inferred← citeshttps://doi.org/10.1038/ncomms9000openalex-snapshot
Assessing the contribution of interferon antagonism to the virulence of West African Ebola viruses
inferred← citeshttps://doi.org/10.1038/nrmicro.2018.11openalex-snapshot
The spread and evolution of rabies virus: conquering new frontiers
inferred← citeshttps://doi.org/10.1038/s41396-021-00911-3openalex-snapshot
Host genotype and genetic diversity shape the evolution of a novel bacterial infection
inferred← citeshttps://doi.org/10.1038/s41396-022-01310-yopenalex-snapshot
Viral cross-class transmission results in disease of a phytopathogenic fungus
inferred← citeshttps://doi.org/10.1038/s41467-021-24085-wopenalex-snapshot
Divide-and-conquer: machine-learning integrates mammalian and viral traits with network features to predict virus-mammal associations
inferred← citeshttps://doi.org/10.1038/s41559-023-02082-0openalex-snapshot
Coordinated surveillance is essential to monitor and mitigate the evolutionary impacts of SARS-CoV-2 spillover and circulation in animal hosts
inferred← citeshttps://doi.org/10.1038/s41564-021-00999-5openalex-snapshot
The science of the host–virus network
inferred← citeshttps://doi.org/10.1038/s41579-023-00877-3openalex-snapshot
Bacterial defences: mechanisms, evolution and antimicrobial resistance
inferred← citeshttps://doi.org/10.1038/s41586-022-04788-wopenalex-snapshot
Climate change increases cross-species viral transmission risk
inferred← citeshttps://doi.org/10.1038/s41598-018-28308-xopenalex-snapshot
Comparative studies of alignment, alignment-free and SVM based approaches for predicting the hosts of viruses based on viral sequences
inferred← citeshttps://doi.org/10.1038/s41598-020-62597-5openalex-snapshot
Epidemics with mutating infectivity on small-world networks
inferred← citeshttps://doi.org/10.1038/s41598-020-63714-0openalex-snapshot
Multiple differences in pathogen-host cell interactions following a bacterial host shift
inferred← citeshttps://doi.org/10.1038/s41598-020-72691-3openalex-snapshot
Evolutionary dynamics of Tomato spotted wilt virus within and between alternate plant hosts and thrips
inferred← citeshttps://doi.org/10.1038/srep14480openalex-snapshot
The heptad repeat region is a major selection target in MERS-CoV and related coronaviruses
inferred← citeshttps://doi.org/10.1073/pnas.1817323116openalex-snapshot
Disease mortality in domesticated animals is predicted by host evolutionary relationships
inferred← citeshttps://doi.org/10.1073/pnas.2006778117openalex-snapshot
Virulence mismatches in index hosts shape the outcomes of cross-species transmission
inferred← citeshttps://doi.org/10.1073/pnas.2301549120openalex-snapshot
Structural evolution of an immune evasion determinant shapes pathogen host tropism
inferred← citeshttps://doi.org/10.1080/01652176.2022.2079756openalex-snapshot
Swine coronaviruses (SCoVs) and their emerging threats to swine population, inter-species transmission, exploring the susceptibility of pigs for SARS-CoV-2 and zoonotic concerns
inferred← citeshttps://doi.org/10.1080/13102818.2020.1843539openalex-snapshot
Respiratory viruses crossing the species barrier and emergence of new human coronavirus infectious disease
inferred← citeshttps://doi.org/10.1080/21505594.2024.2395837openalex-snapshot
Characterization of Conserved Evolution in H7N9 Avian Influenza Virus Prior Mass Vaccination
inferred← citeshttps://doi.org/10.1086/713913openalex-snapshot
Asymmetric Evolvability Leads to Specialization without Trade-Offs
inferred← citeshttps://doi.org/10.1089/omi.2021.0058openalex-snapshot
COVID-19 and Preparing for Future Ecological Crises: Hopes from Metagenomics in Facing Current and Future Viral Pandemic Challenges
inferred← citeshttps://doi.org/10.1093/aesa/saaa048openalex-snapshot
Evolutionary Diversification in Insect Vector–Phytoplasma–Plant Associations
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa705openalex-snapshot
VIDHOP, viral host prediction with deep learning
inferred← citeshttps://doi.org/10.1093/ee/nvag102openalex-snapshot
Detection of Nosema ceranae in Euglossa imperialis (Apidae) and a synthesis of host associations across Hymenoptera
inferred← citeshttps://doi.org/10.1093/evlett/qrad051openalex-snapshot
Host–pathogen coevolution promotes the evolution of general, broad-spectrum resistance and reduces foreign pathogen spillover risk
inferred← citeshttps://doi.org/10.1093/evlett/qrae038openalex-snapshot
Quantifying the strength of viral fitness trade-offs between hosts: a meta-analysis of pleiotropic fitness effects
inferred← citeshttps://doi.org/10.1093/evlett/qraf002openalex-snapshot
Positive correlations in susceptibility to a diverse panel of viruses across Drosophilidae host species
inferred← citeshttps://doi.org/10.1093/femsec/fiaf016openalex-snapshot
Limited similarity in microbial composition among coral reef fishes from the Great Barrier Reef, Australia
inferred← citeshttps://doi.org/10.1093/gbe/evab049openalex-snapshot
The Missing Expression Level–Evolutionary Rate Anticorrelation in Viruses Does Not Support Protein Function as a Main Constraint on Sequence Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evz146openalex-snapshot
The Critical Role of Codon Composition on the Translation Efficiency Robustness of the Hepatitis A Virus Capsid
inferred← citeshttps://doi.org/10.1093/icb/icaf063openalex-snapshot
Matryoshka Dolls of Virus Evolution: The Internal Forces That Shape Viral Fate
inferred← citeshttps://doi.org/10.1093/jee/toy288openalex-snapshot
Ectoparasitic MitesVarroa underwoodi(Acarina: Varroidae) in Eastern Honeybees, but not in Western Honeybees
inferred← citeshttps://doi.org/10.1093/nsr/nwae463openalex-snapshot
Small mammals in a biodiversity hotspot harbor viruses of emergence risk
inferred← citeshttps://doi.org/10.1093/obo/9780199830060-0195openalex-snapshot
Ecology of Emerging Zoonotic Viruses
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.001.0001openalex-snapshot
Evolutionary Parasitology
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.002.0006openalex-snapshot
List of common acronyms
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0001openalex-snapshot
Parasites and their significance
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0002openalex-snapshot
The study of evolutionary parasitology
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0003openalex-snapshot
The diversity and natural history of parasites
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0004openalex-snapshot
The natural history of defences
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0005openalex-snapshot
Ecological immunology
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0006openalex-snapshot
Parasites, immunity, and sexual selection
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0008openalex-snapshot
Parasite immune evasion and manipulation of host phenotype
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0009openalex-snapshot
Transmission, infection, and pathogenesis
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0010openalex-snapshot
Host–parasite genetics
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0011openalex-snapshot
Between-host dynamics (Epidemiology)
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0012openalex-snapshot
Within-host dynamics and evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0013openalex-snapshot
Virulence evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198832140.003.0014openalex-snapshot
Host–parasite co-evolution
inferred← citeshttps://doi.org/10.1093/sysbio/syad022openalex-snapshot
Effect of Host-Switching on the Ecological and Evolutionary Patterns of Parasites
inferred← citeshttps://doi.org/10.1093/ve/veaa028openalex-snapshot
Intrinsically disordered regions are abundant in simplexvirus proteomes and display signatures of positive selection
inferred← citeshttps://doi.org/10.1093/ve/veab005openalex-snapshot
Virome composition in marine fish revealed by meta-transcriptomics
inferred← citeshttps://doi.org/10.1093/ve/veab025openalex-snapshot
Intrahost speciations and host switches played an important role in the evolution of herpesviruses
inferred← citeshttps://doi.org/10.1093/ve/veab034openalex-snapshot
Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray–Darling Basin, Australia
inferred← citeshttps://doi.org/10.1093/ve/veac057openalex-snapshot
Identification of diverse viruses associated with grasshoppers unveils the parallel relationship between host phylogeny and virome composition
inferred← citeshttps://doi.org/10.1093/ve/vead011openalex-snapshot
Limited cross-species virus transmission in a spatially restricted coral reef fish community
inferred← citeshttps://doi.org/10.1093/ve/veae002openalex-snapshot
Genome-wide support for incipient Tula hantavirus species within a single rodent host lineage
inferred← citeshttps://doi.org/10.1093/ve/veae049openalex-snapshot
Bacteriophage Φ21’s receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity
inferred← citeshttps://doi.org/10.1093/ve/veae050openalex-snapshot
Viromes of Antarctic fish resemble the diversity found at lower latitudes
inferred← citeshttps://doi.org/10.1093/ve/veae105openalex-snapshot
A meta-analysis highlights the idiosyncratic nature of tradeoffs in laboratory models of virus evolution
inferred← citeshttps://doi.org/10.1093/ve/veaf051openalex-snapshot
Insights into diversity, host range, and evolution of iflaviruses in Lepidoptera through transcriptome mining
inferred← citeshttps://doi.org/10.1093/ve/veag009openalex-snapshot
Sequence based virus host prediction: a curated dataset and generalizable framework for training artificial intelligence to identify viruses of humans
inferred← citeshttps://doi.org/10.1093/ve/vev014openalex-snapshot
The evolution, diversity, and host associations of rhabdoviruses
inferred← citeshttps://doi.org/10.1094/phyto-09-17-0307-ropenalex-snapshot
Transcriptome Profiling ofMelaleuca quinquenerviaChallenged by Myrtle Rust Reveals Differences in Defense Responses Among Resistant Individuals
inferred← citeshttps://doi.org/10.1098/rspb.2022.1073openalex-snapshot
Viral spillover risk increases with climate change in High Arctic lake sediments
inferred← citeshttps://doi.org/10.1098/rspb.2024.2239openalex-snapshot
Varying phylogenetic signal in susceptibility to four bacterial pathogens across species of Drosophilidae
inferred← citeshttps://doi.org/10.1098/rspb.2025.0389openalex-snapshot
Making sense of the virome in light of evolution and ecology
inferred← citeshttps://doi.org/10.1098/rspb.2025.1940openalex-snapshot
Resident viruses, but not honeybee-associated viruses, impair solitary bee fitness in the field
inferred← citeshttps://doi.org/10.1098/rspb.2025.3143openalex-snapshot
Virus infection significantly decreases insect fitness: a meta-analysis
inferred← citeshttps://doi.org/10.1098/rstb.2016.0083openalex-snapshot
The evolution of transmission mode
inferred← citeshttps://doi.org/10.1098/rstb.2020.0363openalex-snapshot
Identifying co-phylogenetic hotspots for zoonotic disease
inferred← citeshttps://doi.org/10.1099/jgv.0.001177openalex-snapshot
Infection of covert mortality nodavirus in Japanese flounder reveals host jump of the emerging alphanodavirus
inferred← citeshttps://doi.org/10.1099/mgen.0.001142openalex-snapshot
Transcriptomic profiling reveals host-specific evolutionary pathways promoting enhanced fitness in the plant pathogen Ralstonia pseudosolanacearum
inferred← citeshttps://doi.org/10.1099/mic.0.001281openalex-snapshot
Rapid divergence in independent aspects of the compatibility phenotype in a Spiroplasma–Drosophila interaction
inferred← citeshttps://doi.org/10.1101/032839openalex-snapshot
Spread of the pandemic Zika virus lineage is associated with NS1 codon usage adaptation in humans
inferred← citeshttps://doi.org/10.1101/166215openalex-snapshot
A geography aware reconciliation method to investigate diversification patterns in host/parasite interactions
inferred← citeshttps://doi.org/10.1101/2020.03.30.015685openalex-snapshot
Recombination and purifying selection preserves covariant movements of mosaic SARS-CoV-2 protein S
inferred← citeshttps://doi.org/10.1101/2020.05.04.076281openalex-snapshot
Global genetic patterns reveal host tropism versus cross-taxon transmission of bat Betacoronaviruses
inferred← citeshttps://doi.org/10.1101/2020.08.19.20178145openalex-snapshot
Reservoir population dynamics and pathogen epidemiology drive pathogen genetic diversity, spillover, and emergence
inferred← citeshttps://doi.org/10.1101/2021.02.16.431403openalex-snapshot
Between virus correlations in the outcome of infection across host species: evidence of virus genotype by host species interactions
inferred← citeshttps://doi.org/10.1101/2021.11.16.468783openalex-snapshot
Identification of diverse viruses associated with grasshoppers unveils phylogenetic congruence between hosts and viruses
inferred← citeshttps://doi.org/10.1101/2021.12.19.473364openalex-snapshot
Molecular identification of bats from Wavulgalge cave, Wellawaya, Sri Lanka
inferred← citeshttps://doi.org/10.1101/2022.09.13.507797openalex-snapshot
Structural evolution of an immune evasion determinant shapes Lyme borreliae host tropism
inferred← citeshttps://doi.org/10.1101/2023.06.05.543675openalex-snapshot
A mutation-mediated host shift drives Avian paramyxovirus type 1 evolution
inferred← citeshttps://doi.org/10.1101/2023.06.05.543762openalex-snapshot
Bacteriophage diet breadth is impacted by interactions between bacteria
inferred← citeshttps://doi.org/10.1101/2023.07.18.549351openalex-snapshot
The impact of late Pleistocene mammal extinctions on pathogen richness in extant hosts
inferred← citeshttps://doi.org/10.1101/2023.10.08.561400openalex-snapshot
Diversity and adaptability of RNA viruses in rice planthopper, Laodelphax striatellus
inferred← citeshttps://doi.org/10.1101/2023.12.16.571995openalex-snapshot
Quantifying the strength of viral fitness tradeoffs between hosts: A meta-analysis of pleiotropic fitness effects
inferred← citeshttps://doi.org/10.1101/2024.02.10.579610openalex-snapshot
Natural variation in infection specificity of Caenorhabditis briggsae isolates by two RNA viruses
inferred← citeshttps://doi.org/10.1101/2024.02.24.581894openalex-snapshot
Limited transmission of microbial species among coral reef fishes from the Great Barrier Reef, Australia
inferred← citeshttps://doi.org/10.1101/2024.09.10.612213openalex-snapshot
Small mammals in biodiversity hotspot harbor viruses of epidemic potential
inferred← citeshttps://doi.org/10.1101/2024.10.09.617458openalex-snapshot
Positive correlations in susceptibility to a diverse panel of viruses across host species
inferred← citeshttps://doi.org/10.1101/2024.10.14.618291openalex-snapshot
Spillover rate is not a predictor of host jump risk, but spillover novelty is
inferred← citeshttps://doi.org/10.1101/2025.05.12.653482openalex-snapshot
Narrowed host ranges do not constrain future host range expansion in RNA phage phi6
inferred← citeshttps://doi.org/10.1101/2025.09.10.675297openalex-snapshot
Biological context modulates virus-host dynamics and diversification
inferred← citeshttps://doi.org/10.1101/226175openalex-snapshot
Host shifts result in parallel genetic changes when viruses evolve in closely related species
inferred← citeshttps://doi.org/10.1101/418111openalex-snapshot
Intrahost speciations and host switches shaped the evolution of herpesviruses
inferred← citeshttps://doi.org/10.1101/421511openalex-snapshot
Distinct spread of DNA and RNA viruses among mammals amid prominent role of domestic species
inferred← citeshttps://doi.org/10.1101/498717openalex-snapshot
Host evolutionary history predicts virus prevalence across bumblebee species
inferred← citeshttps://doi.org/10.1101/575571openalex-snapshot
VIDHOP, viral host prediction with Deep Learning
inferred← citeshttps://doi.org/10.1101/771998openalex-snapshot
Viral host-range evolvability changes in response to fluctuating selection
inferred← citeshttps://doi.org/10.1101/cshperspect.a038489openalex-snapshot
The Ecology and Evolution of Influenza Viruses
inferred← citeshttps://doi.org/10.1103/8g2r-w6x6openalex-snapshot
Rare events of host switching for diseases using a susceptible-infected-recovered model with mutations
inferred← citeshttps://doi.org/10.1111/1365-2435.13467openalex-snapshot
The interplay between host community structure and pathogen life‐history constraints in driving the evolution of host‐range shifts
inferred← citeshttps://doi.org/10.1111/1365-2656.13694openalex-snapshot
Virus isolation data improve host predictions for New World rodent orthohantaviruses
inferred← citeshttps://doi.org/10.1111/1744-7917.13242openalex-snapshot
Insect‐specific RNA virus affects the stylet penetration activity of brown citrus aphid (Aphis citricidus) to facilitate its transmission
inferred← citeshttps://doi.org/10.1111/1755-0998.12897openalex-snapshot
A geography‐aware reconciliation method to investigate diversification patterns in host/parasite interactions
inferred← citeshttps://doi.org/10.1111/brv.12795openalex-snapshot
Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence
inferred← citeshttps://doi.org/10.1111/cobi.14232openalex-snapshot
Avoiding novel, unwanted interactions among species to decrease risk of zoonoses
inferred← citeshttps://doi.org/10.1111/ele.12742openalex-snapshot
Overlooking the smallest matter: viruses impact biological invasions
inferred← citeshttps://doi.org/10.1111/ele.12799openalex-snapshot
Host shift and cospeciation rate estimation from co‐phylogenies
inferred← citeshttps://doi.org/10.1111/ele.14431openalex-snapshot
Are novel or locally adapted pathogens more devastating and why? Resolving opposing hypotheses
inferred← citeshttps://doi.org/10.1111/evo.12966openalex-snapshot
Evolutionary history shapes patterns of mutualistic benefit in Acacia –rhizobial interactions
inferred← citeshttps://doi.org/10.1111/evo.13415openalex-snapshot
A phylogenetic comparative method for evaluating trait coevolution across two phylogenies for sets of interacting species
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