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Defining the seafloor microbiome of the Gulf of Mexico and its response to oil perturbation

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9781444325508.ch8openalex-snapshot

Diversity of Abyssal Marine Life

inferredcites →https://doi.org/10.1002/mbo3.89openalex-snapshot

Evaluating bacterial community structures in oil collected from the sea surface and sediment in the northern Gulf of Mexico after the Deepwater Horizon oil spill

inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot

ggplot2: Elegant Graphics for Data Analysis

inferredcites →https://doi.org/10.1007/978-3-642-30123-0_42openalex-snapshot

Marine Deep Sediment Microbial Communities

inferredcites →https://doi.org/10.1007/978-4-431-87771-4openalex-snapshot

Spatial Complexity, Informatics, and Wildlife Conservation

inferredcites →https://doi.org/10.1007/978-4-431-87771-4_8openalex-snapshot

Using a Random Forest Model and Public Data to Predict the Distribution of Prey for Marine Wildlife Management

inferredcites →https://doi.org/10.1016/0160-4120(81)90111-2openalex-snapshot

Fate of oil from two major oil spills: Role of microbial degradation in removing oil from the Amoco Cadiz and IXTOC I spills

inferredcites →https://doi.org/10.1016/0198-0149(92)90073-3openalex-snapshot

Disturbance, colonization and succession in a deep-sea sediment community: artificial-mound experiments

inferredcites →https://doi.org/10.1016/j.dsr.2016.04.010openalex-snapshot

Molecular characterization of benthic foraminifera communities from the Northeastern Gulf of Mexico shelf and slope following the Deepwater Horizon event

inferredcites →https://doi.org/10.1016/j.dsr2.2007.07.002openalex-snapshot

The archaebacterial communities in Antarctic bathypelagic sediments

inferredcites →https://doi.org/10.1016/j.dsr2.2010.05.014openalex-snapshot

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

inferredcites →https://doi.org/10.1016/j.earscirev.2013.02.008openalex-snapshot

Quantifying the degradation of organic matter in marine sediments: A review and synthesis

inferredcites →https://doi.org/10.1016/j.envpol.2017.05.019openalex-snapshot

Large-scale deposition of weathered oil in the Gulf of Mexico following a deep-water oil spill

inferredcites →https://doi.org/10.1016/j.mib.2011.04.007openalex-snapshot

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

inferredcites →https://doi.org/10.1016/j.pocean.2007.11.003openalex-snapshot

Particulate organic carbon fluxes to the ocean interior and factors controlling the biological pump: A synthesis of global sediment trap programs since 1983

inferredcites →https://doi.org/10.1016/j.scitotenv.2009.11.047openalex-snapshot

The science of hypoxia in the Northern Gulf of Mexico: A review

inferredcites →https://doi.org/10.1016/j.watres.2010.05.019openalex-snapshot

Novel application of a statistical technique, Random Forests, in a bacterial source tracking study

inferredcites →https://doi.org/10.1016/s0967-0637(02)00025-0openalex-snapshot

Benthic carbon mineralization in the Atlantic: a synthesis based on in situ data from the last decade

inferredcites →https://doi.org/10.1021/es071617kopenalex-snapshot

Gulf of Mexico Hypoxia: Alternate States and a Legacy

inferredcites →https://doi.org/10.1038/290235a0openalex-snapshot

Ixtoc 1 oil spill: flaking of surface mousse in the Gulf of Mexico

inferredcites →https://doi.org/10.1038/302520a0openalex-snapshot

Seasonal sedimentation of phytoplankton to the deep-sea benthos

inferredcites →https://doi.org/10.1038/38477openalex-snapshot

Sources and contribution of terrigenous organic carbon to surface sediments in the Gulf of Mexico

inferredcites →https://doi.org/10.1038/466304aopenalex-snapshot

The lost legacy of the last great oil spill

inferredcites →https://doi.org/10.1038/ismej.2009.106openalex-snapshot

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean

inferredcites →https://doi.org/10.1038/ismej.2010.199openalex-snapshot

Metagenomics of the subsurface Brazos-Trinity Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes

inferredcites →https://doi.org/10.1038/ismej.2011.140openalex-snapshot

The energy–diversity relationship of complex bacterial communities in Arctic deep-sea sediments

inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

inferredcites →https://doi.org/10.1038/ismej.2013.254openalex-snapshot

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

inferredcites →https://doi.org/10.1038/ngeo1067openalex-snapshot

Magnitude and oxidation potential of hydrocarbon gases released from the BP oil well blowout

inferredcites →https://doi.org/10.1038/ngeo1773openalex-snapshot

High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth

inferredcites →https://doi.org/10.1038/nmeth.2658openalex-snapshot

Differential abundance analysis for microbial marker-gene surveys

inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot

QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1038/nrmicro1745openalex-snapshot

Feast and famine — microbial life in the deep-sea bed

inferredcites →https://doi.org/10.1038/s41598-017-02295-xopenalex-snapshot

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment

inferredcites →https://doi.org/10.1073/pnas.0611525104openalex-snapshot

Global patterns in bacterial diversity

inferredcites →https://doi.org/10.1073/pnas.1201914109openalex-snapshot

Role for urea in nitrification by polar marine Archaea

inferredcites →https://doi.org/10.1073/pnas.1414873111openalex-snapshot

Fallout plume of submerged oil from Deepwater Horizon

inferredcites →https://doi.org/10.1088/1748-9326/7/3/035301openalex-snapshot

Marine snow formation in the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico

inferredcites →https://doi.org/10.1088/1748-9326/7/4/045303openalex-snapshot

Radiocarbon evidence that carbon from the Deepwater Horizon spill entered the planktonic food web of the Gulf of Mexico

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1111/1462-2920.12593openalex-snapshot

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in A rctic fjord sediments

inferredcites →https://doi.org/10.1111/1462-2920.13134openalex-snapshot

Ecology and physiology of anaerobic ammonium oxidizing bacteria

inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02544.xopenalex-snapshot

Microbial diversity and stratification of South Pacific abyssal marine sediments

inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00718.xopenalex-snapshot

Subseafloor microbial communities associated with rapid turbidite deposition in the Gulf of Mexico continental slope (IODP Expedition 308)

inferredcites →https://doi.org/10.1111/j.1758-2229.2010.00163.xopenalex-snapshot

Sediment‐associated microdiversity within the Marine Group I Crenarchaeota

inferredcites →https://doi.org/10.1111/j.2041-210x.2012.00253.xopenalex-snapshot

Identifying appropriate spatial scales of predictors in species distribution models with the random forest algorithm

inferredcites →https://doi.org/10.1126/sciadv.1500961openalex-snapshot

Macroecological drivers of archaea and bacteria in benthic deep-sea ecosystems

inferredcites →https://doi.org/10.1126/science.1203690openalex-snapshot

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

inferredcites →https://doi.org/10.1126/science.1262073openalex-snapshot

Determinants of community structure in the global plankton interactome

inferredcites →https://doi.org/10.1126/science.aab4133openalex-snapshot

Deepwater Horizon, 5 years on

inferredcites →https://doi.org/10.1128/aem.01254-06openalex-snapshot

Molecular Evidence for the Broad Distribution of Anaerobic Ammonium-Oxidizing Bacteria in Freshwater and Marine Sediments

inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

inferredcites →https://doi.org/10.1146/annurev-marine-010814-015543openalex-snapshot

Microbial Responses to the Deepwater Horizon Oil Spill: From Coastal Wetlands to the Deep Sea

inferredcites →https://doi.org/10.1177/154405910408300516openalex-snapshot

Indian Hedgehog: A Mechanotransduction Mediator in Condylar Cartilage

inferredcites →https://doi.org/10.1201/9780203180570-33openalex-snapshot

Ecology of whale falls at the deep-sea ﬂoor

inferredcites →https://doi.org/10.1371/journal.pcbi.1006099openalex-snapshot

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome

inferredcites →https://doi.org/10.1371/journal.pone.0015323openalex-snapshot

Global Patterns and Predictions of Seafloor Biomass Using Random Forests

inferredcites →https://doi.org/10.1371/journal.pone.0024570openalex-snapshot

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

inferredcites →https://doi.org/10.1371/journal.pone.0072779openalex-snapshot

Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic)

inferredcites →https://doi.org/10.1371/journal.pone.0128122openalex-snapshot

Deconstructing the Polymerase Chain Reaction: Understanding and Correcting Bias Associated with Primer Degeneracies and Primer-Template Mismatches

inferredcites →https://doi.org/10.1371/journal.pone.0128371openalex-snapshot

Hydrocarbons in Deep-Sea Sediments following the 2010 Deepwater Horizon Blowout in the Northeast Gulf of Mexico

inferredcites →https://doi.org/10.1371/journal.pone.0131080openalex-snapshot

Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps

inferredcites →https://doi.org/10.1371/journal.pone.0132341openalex-snapshot

Sedimentation Pulse in the NE Gulf of Mexico following the 2010 DWH Blowout

inferredcites →https://doi.org/10.1371/journal.pone.0162755openalex-snapshot

Opposite Effects of mGluR1a and mGluR5 Activation on Nucleus Accumbens Medium Spiny Neuron Dendritic Spine Density

inferredcites →https://doi.org/10.1515/9780691216096openalex-snapshot

Geochemistry of Marine Sediments

inferredcites →https://doi.org/10.1594/pangaea.804574openalex-snapshot

GEMS-GLORI world river discharge database

inferredcites →https://doi.org/10.1890/07-0539.1openalex-snapshot

RANDOM FORESTS FOR CLASSIFICATION IN ECOLOGY

inferredcites →https://doi.org/10.2307/j.ctv131bw7sopenalex-snapshot

Geochemistry of Marine Sediments

inferredcites →https://doi.org/10.3133/wri964113openalex-snapshot

Trends in nutrient inflows to the Gulf of Mexico from streams draining the conterminous United States, 1972-93

inferredcites →https://doi.org/10.3389/fmars.2014.00013openalex-snapshot

Seasonal variability in irradiance affects herbicide toxicity to the marine flagellate Dunaliella tertiolecta

inferredcites →https://doi.org/10.3389/fmars.2014.00057openalex-snapshot

The environmental legacy of the Ixtoc-I oil spill in Campeche Sound, southwestern Gulf of Mexico

inferredcites →https://doi.org/10.3389/fmars.2015.00017openalex-snapshot

New perspectives in benthic deep-sea microbial ecology

inferredcites →https://doi.org/10.3389/fmicb.2012.00168openalex-snapshot

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

inferredcites →https://doi.org/10.3389/fmicb.2013.00050openalex-snapshot

Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

inferredcites →https://doi.org/10.3389/fmicb.2014.00153openalex-snapshot

Genetic basis for nitrate resistance in Desulfovibrio strains

inferredcites →https://doi.org/10.3389/fmicb.2014.00472openalex-snapshot

Seasonality and depth distribution of the abundance and activity of ammonia oxidizing microorganisms in marine coastal sediments (North Sea)

inferredcites →https://doi.org/10.3389/fmicb.2016.00284openalex-snapshot

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure

inferredcites →https://doi.org/10.3389/fmicb.2016.01234openalex-snapshot

Bacterial Communities: Interactions to Scale

inferredcites →https://doi.org/10.3791/54363openalex-snapshot

Sediment Core Extrusion Method at Millimeter Resolution Using a Calibrated, Threaded-rod

inferredcites →https://doi.org/10.4319/lo.2009.54.3.0723openalex-snapshot

Nitrogen cycling in a deep ocean margin sediment (Sagami Bay, Japan)

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

inferredcites →https://doi.org/10.7717/peerj.593openalex-snapshot

Swarm: robust and fast clustering method for amplicon-based studies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/606806openalex-snapshot

Metabolic and metagenomic profiling of hydrocarbon-degrading microorganisms obtained from the deep biosphere of the Gulf of México

inferred← citeshttps://doi.org/10.1128/msystems.00824-20openalex-snapshot

Chemical Profiling Provides Insights into the Metabolic Machinery of Hydrocarbon-Degrading Deep-Sea Microbes

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