On the public citation graph

Deconstructing the Polymerase Chain Reaction: Understanding and Correcting Bias Associated with Primer Degeneracies and Primer-Template Mismatches

https://doi.org/10.1371/journal.pone.0128122
0 signed · 244 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.mcp.2006.09.003openalex-snapshot
Gene capture and random amplification for quantitative recovery of homologous genes
inferredcites →https://doi.org/10.1016/j.mimet.2009.03.001openalex-snapshot
Quantitative effects of position and type of single mismatch on single base primer extension
inferredcites →https://doi.org/10.1038/ismej.2011.139openalex-snapshot
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1046/j.1365-294x.1997.00205.xopenalex-snapshot
Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/gbe/evr106openalex-snapshot
Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics
inferredcites →https://doi.org/10.1093/nar/23.13.2361openalex-snapshot
3-Nitropyrrole and 5-nitroindole as universal bases in primers for DNA sequencing and PCR
inferredcites →https://doi.org/10.1093/nar/gkn689openalex-snapshot
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea
inferredcites →https://doi.org/10.1111/j.1442-9993.1993.tb00438.xopenalex-snapshot
Non‐parametric multivariate analyses of changes in community structure
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02550.xopenalex-snapshot
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00283.xopenalex-snapshot
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
inferredcites →https://doi.org/10.1111/j.1574-6976.1997.tb00351.xopenalex-snapshot
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
inferredcites →https://doi.org/10.1111/tan.12071openalex-snapshot
High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ system for simplified amplicon library preparation
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.01933-07openalex-snapshot
Miniprimer PCR, a New Lens for Viewing the Microbial World
inferredcites →https://doi.org/10.1128/aem.02272-07openalex-snapshot
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes
inferredcites →https://doi.org/10.1128/aem.02403-07openalex-snapshot
Quantification of the Detrimental Effect of a Single Primer-Template Mismatch by Real-Time PCR Using the 16S rRNA Gene as an Example
inferredcites →https://doi.org/10.1128/aem.03069-09openalex-snapshot
Denitrifying Bacteria Isolated from Terrestrial Subsurface Sediments Exposed to Mixed-Waste Contamination
inferredcites →https://doi.org/10.1128/aem.05146-11openalex-snapshot
Strategy for Modular Tagged High-Throughput Amplicon Sequencing
inferredcites →https://doi.org/10.1128/aem.59.3.695-700.1993openalex-snapshot
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
inferredcites →https://doi.org/10.1128/aem.62.2.625-630.1996openalex-snapshot
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
inferredcites →https://doi.org/10.1128/aem.64.10.3724-3730.1998openalex-snapshot
Bias in Template-to-Product Ratios in Multitemplate PCR
inferredcites →https://doi.org/10.1128/aem.64.2.795-799.1998openalex-snapshot
Design and Evaluation of Useful Bacterium-Specific PCR Primers That Amplify Genes Coding for Bacterial 16S rRNA
inferredcites →https://doi.org/10.1128/aem.67.8.3753-3755.2001openalex-snapshot
Optimization of Annealing Temperature To Reduce Bias Caused by a Primer Mismatch in Multitemplate PCR
inferredcites →https://doi.org/10.1128/aem.71.12.8966-8969.2005openalex-snapshot
PCR-Induced Sequence Artifacts and Bias: Insights from Comparison of Two 16S rRNA Clone Libraries Constructed from the Same Sample
inferredcites →https://doi.org/10.1128/jb.00871-12openalex-snapshot
Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities
inferredcites →https://doi.org/10.1186/1471-2180-12-66openalex-snapshot
Coverage evaluation of universal bacterial primers using the metagenomic datasets
inferredcites →https://doi.org/10.1186/2047-217x-1-7openalex-snapshot
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
inferredcites →https://doi.org/10.1371/journal.pcbi.1002743openalex-snapshot
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance
inferredcites →https://doi.org/10.1371/journal.pone.0020303openalex-snapshot
An Efficient Strategy for Broad-Range Detection of Low Abundance Bacteria without DNA Decontamination of PCR Reagents
inferredcites →https://doi.org/10.1371/journal.pone.0044224openalex-snapshot
Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3963861openalex-extracted
inferred← citeshttps://doi.org/10.1002/2017gl075827openalex-snapshot
Estimation of Throughfall and Stemflow Bacterial Flux in a Subtropical Oak‐Cedar Forest
inferred← citeshttps://doi.org/10.1002/bit.27904openalex-snapshot
A large‐scale metagenomic study for enzyme profiles using the focused identification of the NGS‐based definitive enzyme research (FINDER) strategy
inferred← citeshttps://doi.org/10.1002/eap.2246openalex-snapshot
Landscape‐dependent effects of varietal mixtures on insect pest control and implications for farmer profits
inferred← citeshttps://doi.org/10.1002/ece3.4520openalex-snapshot
A broadly applicable COI primer pair and an efficient single‐tube amplicon library preparation protocol for metabarcoding
inferred← citeshttps://doi.org/10.1002/lno.10590openalex-snapshot
Differential effects of nitrate, ammonium, and urea as N sources for microbial communities in the North Pacific Ocean
inferred← citeshttps://doi.org/10.1002/lno.70331openalex-snapshot
High nitrogen fixation and Braarudosphaera presence in the North Sea
inferred← citeshttps://doi.org/10.1007/978-1-0716-1518-8_16openalex-snapshot
Measuring Effects of Dietary Fiber on the Murine Oral Microbiome with Enrichment of 16S rDNA Prior to Amplicon Synthesis
inferred← citeshttps://doi.org/10.1007/978-1-4939-7834-2_7openalex-snapshot
Making and Sequencing Heavily Multiplexed, High-Throughput 16S Ribosomal RNA Gene Amplicon Libraries Using a Flexible, Two-Stage PCR Protocol
inferred← citeshttps://doi.org/10.1007/978-981-13-2224-2_38openalex-snapshot
Identifying Active Methanotrophs and Mitigation of CH4 Emissions in Landfill Cover Soil
inferred← citeshttps://doi.org/10.1007/s00204-016-1859-8openalex-snapshot
Acrolein increases macrophage atherogenicity in association with gut microbiota remodeling in atherosclerotic mice: protective role for the polyphenol-rich pomegranate juice
inferred← citeshttps://doi.org/10.1007/s00227-024-04400-xopenalex-snapshot
The microbial community of coral reefs: biofilm composition on artificial substrates under different environmental conditions
inferred← citeshttps://doi.org/10.1007/s00248-019-01327-5openalex-snapshot
Impacts of Arsenic and Antimony Co-Contamination on Sedimentary Microbial Communities in Rivers with Different Pollution Gradients
inferred← citeshttps://doi.org/10.1007/s00253-018-8903-yopenalex-snapshot
Microbiome dynamics during ensiling of corn with and without Lactobacillus plantarum inoculant
inferred← citeshttps://doi.org/10.1007/s00442-019-04510-0openalex-snapshot
Plant invader alters soil food web via changes to fungal resources
inferred← citeshttps://doi.org/10.1007/s10295-019-02217-yopenalex-snapshot
Effect of temperature on methane oxidation and community composition in landfill cover soil
inferred← citeshttps://doi.org/10.1007/s10493-020-00475-5openalex-snapshot
Whole genomic sequencing and sex-dependent abundance estimation of Cardinium sp., a common and hyperabundant bacterial endosymbiont of the American house dust mite, Dermatophagoides farinae
inferred← citeshttps://doi.org/10.1007/s10658-024-02928-8openalex-snapshot
Using in silico analysis to investigate the false positive potential of qPCR systems for potato disease diagnosis
inferred← citeshttps://doi.org/10.1007/s11104-021-04868-2openalex-snapshot
Biological soil crusts structure the subsurface microbiome in a sandy agroecosystem
inferred← citeshttps://doi.org/10.1007/s12686-025-01404-7openalex-snapshot
Metabarcoding markers and a reference database for neotropical mammals
inferred← citeshttps://doi.org/10.1007/s13213-019-01509-zopenalex-snapshot
Seasonal diversity of the bacterial communities associated with petroglyphs sites from the Negev Desert, Israel
inferred← citeshttps://doi.org/10.1016/bs.mim.2025.03.001openalex-snapshot
PCR primer to identify potentially toxigenic Corynebacterium spp.
inferred← citeshttps://doi.org/10.1016/j.apsoil.2017.10.026openalex-snapshot
Long and short term effects of solarization on soil microbiome and agricultural production
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2021.737213openalex-snapshot
Effects of tank cleaning frequency and sea cucumber co-culture on larval sablefish growth and survival, water quality, and microbial communities
inferred← citeshttps://doi.org/10.1016/j.biochi.2022.02.009openalex-snapshot
PCR enhancers: Types, mechanisms, and applications in long-range PCR
inferred← citeshttps://doi.org/10.1016/j.bioelechem.2017.04.001openalex-snapshot
Influences of dissolved oxygen concentration on biocathodic microbial communities in microbial fuel cells
inferred← citeshttps://doi.org/10.1016/j.bioelechem.2017.11.005openalex-snapshot
A study of microbial communities on terracotta separator and on biocathode of air breathing microbial fuel cells
inferred← citeshttps://doi.org/10.1016/j.bioelechem.2018.10.002openalex-snapshot
Bioelectrochemical Nitrogen fixation (e-BNF): Electro-stimulation of enriched biofilm communities drives autotrophic nitrogen and carbon fixation
inferred← citeshttps://doi.org/10.1016/j.biortech.2019.01.039openalex-snapshot
Microbial recycling cells: First steps into a new type of microbial electrochemical technologies, aimed at recovering nutrients from wastewater
inferred← citeshttps://doi.org/10.1016/j.chemosphere.2020.127271openalex-snapshot
Temporal distribution of microbial community in an industrial wastewater treatment system following crash and during recovery periods
inferred← citeshttps://doi.org/10.1016/j.dnarep.2017.10.003openalex-snapshot
TDP1 is required for efficient non-homologous end joining in human cells
inferred← citeshttps://doi.org/10.1016/j.envpol.2020.114052openalex-snapshot
Comparative characterization of microbial communities that inhabit arsenic-rich and antimony-rich contaminated sites: Responses to two different contamination conditions
inferred← citeshttps://doi.org/10.1016/j.fm.2019.103261openalex-snapshot
Dynamics of bacterial communities in alfalfa and mung bean sprouts during refrigerated conditions
inferred← citeshttps://doi.org/10.1016/j.fm.2020.103580openalex-snapshot
Antimicrobial peptide cocktail activity in minced turkey meat
inferred← citeshttps://doi.org/10.1016/j.fsigen.2016.10.005openalex-snapshot
Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies
inferred← citeshttps://doi.org/10.1016/j.fsigen.2018.11.010openalex-snapshot
Applying microbial biogeography in soil forensics
inferred← citeshttps://doi.org/10.1016/j.intimp.2020.106654openalex-snapshot
An approach towards development of monoclonal IgY antibodies against SARS CoV-2 spike protein (S) using phage display method: A review
inferred← citeshttps://doi.org/10.1016/j.jaci.2018.01.033openalex-snapshot
The nasal microbiome in patients with chronic rhinosinusitis: Analyzing the effects of atopy and bacterial functional pathways in 111 patients
inferred← citeshttps://doi.org/10.1016/j.japr.2020.100135openalex-snapshot
Growth performance, carcass characteristics, ileal microbiota, and amino acid digestibility of broilers fed diets varying in supplemental copper concentrations and amino acid density from 1 to 32 d of age
inferred← citeshttps://doi.org/10.1016/j.jece.2022.107453openalex-snapshot
Plant nutrients recovery from agro-food wastewaters using microbial electrochemical technologies based on porous biocompatible materials
inferred← citeshttps://doi.org/10.1016/j.jim.2017.05.001openalex-snapshot
Insights into the chicken IgY with emphasis on the generation and applications of chicken recombinant monoclonal antibodies
inferred← citeshttps://doi.org/10.1016/j.micres.2025.128089openalex-snapshot
Diverse effects of Bacillus sp. NYG5-emitted volatile organic compounds on plant growth, rhizosphere microbiome, and soil chemistry
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.11.251openalex-snapshot
Root microbiome response to treated wastewater irrigation
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.178143openalex-snapshot
Impacts of long-term irrigation of municipally-treated wastewater to the soil microbial and nutrient properties
inferred← citeshttps://doi.org/10.1016/j.soilbio.2019.107697openalex-snapshot
Elevated CO2 has a significant impact on denitrifying bacterial community in wheat roots
inferred← citeshttps://doi.org/10.1016/j.soilbio.2020.107838openalex-snapshot
State-of-the-art methodologies to identify antimicrobial secondary metabolites in soil bacterial communities-A review
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108551openalex-snapshot
Seasonality drives microbiome composition and nitrogen cycling in soil below biocrusts
inferred← citeshttps://doi.org/10.1016/j.virol.2026.111005openalex-snapshot
Orthoflavivirus detection by quantitative polymerase chain reaction coupled with the high-resolution melting analysis as a versatile discrimination tool
inferred← citeshttps://doi.org/10.1021/acs.est.6b05767openalex-snapshot
Relationship of Microbiota and Cyanobacterial Secondary Metabolites in Planktothricoides-Dominated Bloom
inferred← citeshttps://doi.org/10.1021/acschembio.8b00254openalex-snapshot
Assessing the Efficiency of Cultivation Techniques To Recover Natural Product Biosynthetic Gene Populations from Sediment
inferred← citeshttps://doi.org/10.1029/2021jd036299openalex-snapshot
Bioaerosol Diversity and Ice Nucleating Particles in the North‐Western Himalayan Region
inferred← citeshttps://doi.org/10.1029/2026jc024221openalex-snapshot
Transient Ecological Niches for Diazotrophs in Upwelling Bays
inferred← citeshttps://doi.org/10.1038/mi.2017.59openalex-snapshot
The TLR9 agonist MGN1703 triggers a potent type I interferon response in the sigmoid colon
inferred← citeshttps://doi.org/10.1038/s41396-018-0259-xopenalex-snapshot
Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre
inferred← citeshttps://doi.org/10.1038/s41396-018-0280-0openalex-snapshot
Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre
inferred← citeshttps://doi.org/10.1038/s41467-021-25824-9openalex-snapshot
Community and single cell analyses reveal complex predatory interactions between bacteria in high diversity systems
inferred← citeshttps://doi.org/10.1038/s41597-023-02877-7openalex-snapshot
Mock community taxonomic classification performance of publicly available shotgun metagenomics pipelines
inferred← citeshttps://doi.org/10.1038/s41598-018-22994-3openalex-snapshot
Effects of green tea on miRNA and microbiome of oral epithelium
inferred← citeshttps://doi.org/10.1038/s41598-026-45336-0openalex-snapshot
New host record of Amblyomma pakhtunensis on the Indian Pangolin (Manis crassicaudata) with detection of a distinct Borrelia lineage
inferred← citeshttps://doi.org/10.1038/s42003-021-01751-9openalex-snapshot
PANDAA intentionally violates conventional qPCR design to enable durable, mismatch-agnostic detection of highly polymorphic pathogens
inferred← citeshttps://doi.org/10.1038/s42003-025-07542-wopenalex-snapshot
Unveiling the contribution of particle-associated non-cyanobacterial diazotrophs to N2 fixation in the upper mesopelagic North Pacific Gyre
inferred← citeshttps://doi.org/10.1038/s43705-023-00220-0openalex-snapshot
A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies
inferred← citeshttps://doi.org/10.1038/srep42127openalex-snapshot
Method for Dual Viral Vector Mediated CRISPR-Cas9 Gene Disruption in Primary Human Endothelial Cells
inferred← citeshttps://doi.org/10.1039/d0en00651copenalex-snapshot
Effect of nanoplastics on the transport of platinum-based pharmaceuticals in water-saturated natural soil and their effect on a soil microbial community
inferred← citeshttps://doi.org/10.1055/s-0042-111208openalex-snapshot
DNA Barcoding for the Identification of Botanicals in Herbal Medicine and Dietary Supplements: Strengths and Limitations
inferred← citeshttps://doi.org/10.1055/s-006-32491openalex-snapshot
inferred← citeshttps://doi.org/10.1080/1028415x.2021.1889452openalex-snapshot
Apolipoprotein E genotype-dependent nutrigenetic effects to prebiotic inulin for modulating systemic metabolism and neuroprotection in mice via gut-brain axis
inferred← citeshttps://doi.org/10.1080/19490976.2019.1618173openalex-snapshot
The ‘ in vivo lifestyle’ of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice
inferred← citeshttps://doi.org/10.1089/ast.2022.0044openalex-snapshot
Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
inferred← citeshttps://doi.org/10.1093/femsec/fiaa026openalex-snapshot
Elucidation of the rhizosphere microbiome linked to Spartina alterniflora phenotype in a salt marsh on Skidaway Island, Georgia, USA
inferred← citeshttps://doi.org/10.1093/femsec/fiz086openalex-snapshot
Gestation alters the gut microbiota of an oviparous lizard
inferred← citeshttps://doi.org/10.1093/ismejo/wrae261openalex-snapshot
Occurrence of “under-the-radar” antibiotic resistance in anthropogenically affected produce
inferred← citeshttps://doi.org/10.1093/jn/nxz006openalex-snapshot
The Combination of 2′-Fucosyllactose with Short-Chain Galacto-Oligosaccharides and Long-Chain Fructo-Oligosaccharides that Enhance Influenza Vaccine Responses Is Associated with Mucosal Immune Regulation in Mice
inferred← citeshttps://doi.org/10.1093/ve/veae053openalex-snapshot
Origins, diversity, and adaptive evolution of DWV in the honey bees of the Azores: the impact of the invasive mite Varroa destructor
inferred← citeshttps://doi.org/10.1094/pbiomes-01-24-0006-ropenalex-snapshot
Persistence and Microbiome Modification in Rhizoctonia solani -Inoculated Rhizosphere Following Amendment with a Bacillus Biocontrol Agent
inferred← citeshttps://doi.org/10.1094/pbiomes-07-25-0056-ropenalex-snapshot
Diversity of Soilborne Oomycetes Associated with Industrial Hemp in Southeastern Pennsylvania: A Comparison of Metabarcoding Loci for Taxonomic Profiling
inferred← citeshttps://doi.org/10.1094/pbiomes-10-23-0111-ropenalex-snapshot
Incorporating Culture-Independent Methods to Identify Net Syndrome-Associated Fusarium Species in Peanuts
inferred← citeshttps://doi.org/10.1094/pbiomes-11-21-0071-ropenalex-snapshot
Identification of Bacterial Populations and Functional Mechanisms Potentially Involved in Biochar-Facilitated Antagonism of the Soilborne PathogenFusarium oxysporum
inferred← citeshttps://doi.org/10.1094/pbiomes-6-2openalex-snapshot
Full Issue PDF
inferred← citeshttps://doi.org/10.1096/fj.201700697rropenalex-snapshot
Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study
inferred← citeshttps://doi.org/10.1098/rsos.242110openalex-snapshot
Cas9-based enrichment for targeted long-read metabarcoding
inferred← citeshttps://doi.org/10.1099/jmm.0.000968openalex-snapshot
Detection of respiratory pathogens in clinical samples using metagenomic shotgun sequencing
inferred← citeshttps://doi.org/10.1101/200337openalex-snapshot
Umbilical Cord Blood Diagnostics for Early Onset Sepsis in Premature Infants: Detection of Bacterial DNA and Systemic Inflammatory Response
inferred← citeshttps://doi.org/10.1101/2022.12.23.521849openalex-snapshot
Development of an amplicon-based high throughput sequencing method for genotypic characterisation of norovirus in oysters
inferred← citeshttps://doi.org/10.1101/236950openalex-snapshot
Defining the seafloor microbiome of the Gulf of Mexico and its response to oil perturbation
inferred← citeshttps://doi.org/10.1111/1462-2920.14429openalex-snapshot
UCYN‐A3, a newly characterized open ocean sublineage of the symbiotic N 2 ‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa
inferred← citeshttps://doi.org/10.1111/1462-2920.14548openalex-snapshot
Bacteria and microeukaryotes are differentially segregated in sympatric wastewater microhabitats
inferred← citeshttps://doi.org/10.1111/1462-2920.14607openalex-snapshot
Microbial diversity of an Antarctic subglacial community and high‐resolution replicate sampling inform hydrological connectivity in a polar desert
inferred← citeshttps://doi.org/10.1111/1462-2920.14794openalex-snapshot
The core seafloor microbiome in the Gulf of Mexico is remarkably consistent and shows evidence of recovery from disturbance caused by major oil spills
inferred← citeshttps://doi.org/10.1111/1462-2920.15351openalex-snapshot
Cell sorting reveals few novel prokaryote and photosynthetic picoeukaryote associations in the oligotrophic ocean
inferred← citeshttps://doi.org/10.1111/1541-4337.13256openalex-snapshot
Is the metabarcoding ripe enough to be applied to the authentication of foodstuff of animal origin? A systematic review
inferred← citeshttps://doi.org/10.1111/1751-7915.13627openalex-snapshot
Lost in translation: the quest for Nitrosomonas cluster 7‐specific amoA primers and TaqMan probes
inferred← citeshttps://doi.org/10.1111/1755-0998.70138openalex-snapshot
A Scalable and Cost‐Effective In‐Line Barcoding Strategy for Standardized 16S rRNA Gene Amplicon Sequencing: Performance Evaluation and Bias Assessment
inferred← citeshttps://doi.org/10.1111/1758-2229.13312openalex-snapshot
Phagotrophy in the nitrogen‐fixing haptophyte Braarudosphaera bigelowii
inferred← citeshttps://doi.org/10.1111/fwb.14030openalex-snapshot
The microbial community spatially varies during a Microcystis bloom event in Lake Kinneret
inferred← citeshttps://doi.org/10.1111/jam.14380openalex-snapshot
Generating amplicon reads for microbial community assessment with next‐generation sequencing
inferred← citeshttps://doi.org/10.1111/jpy.12505openalex-snapshot
Distinct ecological niches of marine symbiotic N2‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa sublineages
inferred← citeshttps://doi.org/10.1111/jpy.13045openalex-snapshot
Unexpected presence of the nitrogen‐fixing symbiotic cyanobacterium UCYN‐A in Monterey Bay, California
inferred← citeshttps://doi.org/10.1111/mec.14219openalex-snapshot
Host‐specific associations affect the microbiome of Philornis downsi, an introduced parasite to the Galápagos Islands
inferred← citeshttps://doi.org/10.1111/mec.14332openalex-snapshot
An exceptional family: Ophiocordyceps‐allied fungus dominates the microbiome of soft scale insects (Hemiptera: Sternorrhyncha: Coccidae)
inferred← citeshttps://doi.org/10.1128/aem.00443-19openalex-snapshot
Hydrocarbon-Degrading Microbial Communities Are Site Specific, and Their Activity Is Limited by Synergies in Temperature and Nutrient Availability in Surface Ocean Waters
inferred← citeshttps://doi.org/10.1128/aem.00826-19openalex-snapshot
Murine Genetic Background Has a Stronger Impact on the Composition of the Gut Microbiota than Maternal Inoculation or Exposure to Unlike Exogenous Microbiota
inferred← citeshttps://doi.org/10.1128/aem.01222-26openalex-snapshot
Comparative evaluation of two high-throughput qPCR systems for environmental and clinical microbiology applications
inferred← citeshttps://doi.org/10.1128/aem.01512-17openalex-snapshot
Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline
inferred← citeshttps://doi.org/10.1128/aem.02087-17openalex-snapshot
Quality of Irrigation Water Affects Soil Functionality and Bacterial Community Stability in Response to Heat Disturbance
inferred← citeshttps://doi.org/10.1128/aem.02156-17openalex-snapshot
Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery
inferred← citeshttps://doi.org/10.1128/aem.02165-22openalex-snapshot
Amplicon-Based High-Throughput Sequencing Method for Genotypic Characterization of Norovirus in Oysters
inferred← citeshttps://doi.org/10.1128/aem.02729-17openalex-snapshot
Common Hydraulic Fracturing Fluid Additives Alter the Structure and Function of Anaerobic Microbial Communities
inferred← citeshttps://doi.org/10.1128/jvi.01371-24openalex-snapshot
Foxa deficiency restricts hepatitis B virus biosynthesis through epigenic silencing
inferred← citeshttps://doi.org/10.1128/jvi.01721-23openalex-snapshot
Ten-eleven translocation (Tet) methylcytosine dioxygenase-dependent viral DNA demethylation mediates in vivo hepatitis B virus (HBV) biosynthesis
inferred← citeshttps://doi.org/10.1128/msphere.00173-20openalex-snapshot
Intestinal Dysbiosis in Carriers of Carbapenem-Resistant Enterobacteriaceae
inferred← citeshttps://doi.org/10.1128/msystems.01308-22openalex-snapshot
Geographic social vulnerability is associated with the alpha diversity of the human microbiome
inferred← citeshttps://doi.org/10.1128/spectrum.02203-25openalex-snapshot
Sensitive detection and differentiation of rhinoviruses and enteroviruses by a nested real-time RT-PCR assay
inferred← citeshttps://doi.org/10.1139/cjfas-2025-0209openalex-snapshot
Giving the Eastern Canadian Diatom Index (IDEC) a makeover using metabarcoding: first considerations and challenges
inferred← citeshttps://doi.org/10.1152/physiolgenomics.00039.2020openalex-snapshot
Sleep fragmentation increases blood pressure and is associated with alterations in the gut microbiome and fecal metabolome in rats
inferred← citeshttps://doi.org/10.1155/2018/5160254openalex-snapshot
DNA Barcoding for the Identification and Authentication of Animal Species in Traditional Medicine
inferred← citeshttps://doi.org/10.1155/are/9950593openalex-snapshot
Effects of Off‐Bottom Rearing of Olympia Oysters ( Ostrea lurida ) on Growth, Survival, Thermal Buffering, Barnacle Fouling, and Microbiomes
inferred← citeshttps://doi.org/10.1177/1099800418811639openalex-snapshot
Considerations When Designing a Microbiome Study: Implications for Nursing Science
inferred← citeshttps://doi.org/10.1186/s12862-019-1571-4openalex-snapshot
Characterizing the ribosomal tandem repeat and its utility as a DNA barcode in lichen-forming fungi
inferred← citeshttps://doi.org/10.1186/s12866-020-02020-1openalex-snapshot
Berberine alters gut microbial function through modulation of bile acids
inferred← citeshttps://doi.org/10.1186/s12866-022-02661-4openalex-snapshot
Pesticide residue exposure provides different responses of the microbiomes of distinct cultures of the stored product pest mite Acarus siro
inferred← citeshttps://doi.org/10.1186/s12967-022-03785-xopenalex-snapshot
The role of the oral microbiome in smoking-related cardiovascular risk: a review of the literature exploring mechanisms and pathways
inferred← citeshttps://doi.org/10.1186/s13567-018-0570-6openalex-snapshot
Microbial communities and inflammatory response in the endometrium differ between normal and metritic dairy cows at 5–10 days post-partum
inferred← citeshttps://doi.org/10.1186/s40168-018-0442-3openalex-snapshot
Hybridization capture reveals microbial diversity missed using current profiling methods
inferred← citeshttps://doi.org/10.1186/s40168-019-0724-4openalex-snapshot
Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight
inferred← citeshttps://doi.org/10.1186/s40168-021-01136-4openalex-snapshot
Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes
inferred← citeshttps://doi.org/10.1186/s40168-023-01611-0openalex-snapshot
Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.1186/s40793-022-00397-2openalex-snapshot
Cytokinin-microbiome interactions regulate developmental functions
inferred← citeshttps://doi.org/10.1186/s42523-020-00045-5openalex-snapshot
Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)
inferred← citeshttps://doi.org/10.13057/biodiv/d250621openalex-snapshot
New specific primer matK and rbcL region for DNA barcode pitcher plant Nepenthes spathulata
inferred← citeshttps://doi.org/10.1371/journal.pone.0142603openalex-snapshot
Methanosarcina Play an Important Role in Anaerobic Co-Digestion of the Seaweed Ulva lactuca: Taxonomy and Predicted Metabolism of Functional Microbial Communities
inferred← citeshttps://doi.org/10.1371/journal.pone.0142933openalex-snapshot
A New Comparative-Genomics Approach for Defining Phenotype-Specific Indicators Reveals Specific Genetic Markers in Predatory Bacteria
inferred← citeshttps://doi.org/10.1371/journal.pone.0157046openalex-snapshot
Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules
inferred← citeshttps://doi.org/10.1371/journal.pone.0157402openalex-snapshot
PCR Strategies for Complete Allele Calling in Multigene Families Using High-Throughput Sequencing Approaches
inferred← citeshttps://doi.org/10.1371/journal.pone.0164463openalex-snapshot
A Tale of Tails: Dissecting the Enhancing Effect of Tailed Primers in Real-Time PCR
inferred← citeshttps://doi.org/10.1371/journal.pone.0177642openalex-snapshot
Characterization of the juvenile green turtle (Chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats
inferred← citeshttps://doi.org/10.1371/journal.pone.0182977openalex-snapshot
Fructose diet alleviates acetaminophen-induced hepatotoxicity in mice
inferred← citeshttps://doi.org/10.1371/journal.pone.0194171openalex-snapshot
Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease
inferred← citeshttps://doi.org/10.1371/journal.pone.0221828openalex-snapshot
Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model
inferred← citeshttps://doi.org/10.1371/journal.pone.0280293openalex-snapshot
Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples
inferred← citeshttps://doi.org/10.1371/journal.pone.0293092openalex-snapshot
An invasive appetite: Combining molecular and stable isotope analyses to reveal the diet of introduced house mice (Mus musculus) on a small, subtropical island
inferred← citeshttps://doi.org/10.1371/journal.ppat.1006239openalex-snapshot
Hepatic deficiency of the pioneer transcription factor FoxA restricts hepatitis B virus biosynthesis by the developmental regulation of viral DNA methylation
inferred← citeshttps://doi.org/10.17844/jphpi.v25i1.36501openalex-snapshot
Evaluasi Primer Gen COI sebagai Biomarker Ketertelusuran Ikan menggunakan Bioinformatika
inferred← citeshttps://doi.org/10.19184/jid.v19i2.6261openalex-snapshot
Optimization Of The Annealing Temperature With Degenerate Primer For Amplification Of Arginine Decarboxylase (ADC) Fragment Gene From Genomic DNA of Maluku Tenggara Local Cassava
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4527828/v1openalex-snapshot
Plant growth promotion mechanisms of Bacillus sp. NYG5
inferred← citeshttps://doi.org/10.21203/rs.3.rs-929320/v1openalex-snapshot
Looking For Polycyclic Aromatic Hydrocarbon Metabolizing Microorganisms In The Oral Cavity of Smokers
inferred← citeshttps://doi.org/10.21608/javs.2021.164324openalex-snapshot
Chicken Egg Yolk-IgY: Passive Immunization Promising Targeted Therapy of COVID-19 Pandemic
inferred← citeshttps://doi.org/10.2196/38605openalex-snapshot
Examining the Relationships Between Sleep Physiology and the Gut Microbiome in Preclinical and Translational Research: Protocol for a Scoping Review
inferred← citeshttps://doi.org/10.2196/preprints.98286openalex-snapshot
Low-Cost Immersive Virtual Reality Versus Standard 2D Video and Text-Based Learning for Pelvic Anatomy Education: A Feasibility Randomised Controlled Trial (Preprint)
inferred← citeshttps://doi.org/10.24203/ajas.v6i6.5532openalex-snapshot
In Silico Design of PCR Primers to Amplify the Salt Tolerance Gene in Soybean
inferred← citeshttps://doi.org/10.2478/pfs-2019-0024openalex-snapshot
Muellerella, a lichenicolous fungal genus recovered as polyphyletic within Chaetothyriomycetidae (Eurotiomycetes, Ascomycota)
inferred← citeshttps://doi.org/10.3103/s0891416823040110openalex-snapshot
Molecular Identification of Leptospira interrogans and Its Treatment with Andrographis paniculata Extract
inferred← citeshttps://doi.org/10.33086/mtphj.v6i2.3476openalex-snapshot
Specific Primer Design of Leucine Rich Repeats and Guanylate Kinase Domain Containing (LRGUK) Genes in Type II Diabetes Mellitus Patients
inferred← citeshttps://doi.org/10.33540/1717openalex-snapshot
Modulation of gut-immune-brain axis by non-digestible oligosaccharides and omega-3 fatty acids in health and allergic disease
inferred← citeshttps://doi.org/10.33866/phytopathol.036.01.1045openalex-snapshot
GENETIC DIVERSITY AND NUCLEOTIDE SEQUENCE CHARACTERIZATION OF THE P4 GENE OF RICE TUNGRO BACILLIFORM VIRUS (RTBV) IN SOUTH KALIMANTAN, INDONESIA
inferred← citeshttps://doi.org/10.3389/fmars.2019.00203openalex-snapshot
Algae and Clay Water Additives Differentially Impact Survival and Microbial Community Structure in Sablefish (Anoplopoma fimbria) Rearing Tanks
inferred← citeshttps://doi.org/10.3389/fmars.2023.1130158openalex-snapshot
Seasonal and spatial patterns in diazotroph community composition at Station ALOHA
inferred← citeshttps://doi.org/10.3389/fmicb.2016.00339openalex-snapshot
Identification of Associations between Bacterioplankton and Photosynthetic Picoeukaryotes in Coastal Waters
inferred← citeshttps://doi.org/10.3389/fmicb.2018.01616openalex-snapshot
In Situ Diazotroph Population Dynamics Under Different Resource Ratios in the North Pacific Subtropical Gyre
inferred← citeshttps://doi.org/10.3389/fmicb.2018.02531openalex-snapshot
The Characteristics and Dynamics of Cyanobacteria–Heterotrophic Bacteria Between Two Estuarine Reservoirs – Tropical Versus Sub-Tropical Regions
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01532openalex-snapshot
Bacterial Dynamics of Wheat Silage
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02142openalex-snapshot
Particle-Associated Microbial Community in a Subtropical Lake During Thermal Mixing and Phytoplankton Succession
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02387openalex-snapshot
Dispersant Enhances Hydrocarbon Degradation and Alters the Structure of Metabolically Active Microbial Communities in Shallow Seawater From the Northeastern Gulf of Mexico
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00493openalex-snapshot
Coxiella-Like Endosymbiont of Rhipicephalus sanguineus Is Required for Physiological Processes During Ontogeny
inferred← citeshttps://doi.org/10.3389/fmicb.2022.867694openalex-snapshot
Spatiotemporal Variation of Microbial Communities in the Ultra-Oligotrophic Eastern Mediterranean Sea
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1247119openalex-snapshot
Microbial dark matter sequences verification in amplicon sequencing and environmental metagenomics data
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1684366openalex-snapshot
Advancing time-since-interval estimation for clandestine graves: a forensic ecogenomics perspective into burial and translocation timelines using massively parallel sequencing
inferred← citeshttps://doi.org/10.3389/fnagi.2017.00298openalex-snapshot
Age Drives Distortion of Brain Metabolic, Vascular and Cognitive Functions, and the Gut Microbiome
inferred← citeshttps://doi.org/10.3390/biomedicines10061298openalex-snapshot
Lactobacillus acidophilus Mitigates Osteoarthritis-Associated Pain, Cartilage Disintegration and Gut Microbiota Dysbiosis in an Experimental Murine OA Model
inferred← citeshttps://doi.org/10.3390/dj7020058openalex-snapshot
Effect of Dietary Fiber on the Composition of the Murine Dental Microbiome
inferred← citeshttps://doi.org/10.3390/fishes9010005openalex-snapshot
In Silico Evaluation of the PCR Performance of Different Tests for Detection of WSSV
inferred← citeshttps://doi.org/10.3390/ijms17122017openalex-snapshot
Light/Dark Shifting Promotes Alcohol-Induced Colon Carcinogenesis: Possible Role of Intestinal Inflammatory Milieu and Microbiota
inferred← citeshttps://doi.org/10.3390/jof7121066openalex-snapshot
Aquatic Hyphomycete Taxonomic Relatedness Translates into Lower Genetic Divergence of the Nitrate Reductase Gene
inferred← citeshttps://doi.org/10.3390/microorganisms8040486openalex-snapshot
Soybean Oil Modulates the Gut Microbiota Associated with Atherogenic Biomarkers
inferred← citeshttps://doi.org/10.3390/microorganisms8121984openalex-snapshot
Temporal Resistome and Microbial Community Dynamics in an Intensive Aquaculture Facility with Prophylactic Antimicrobial Treatment
inferred← citeshttps://doi.org/10.3390/microorganisms9040816openalex-snapshot
CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems
inferred← citeshttps://doi.org/10.3390/microorganisms9081785openalex-snapshot
Root-Associated Microbiomes, Growth and Health of Ornamental Geophytes Treated with Commercial Plant Growth-Promoting Products
inferred← citeshttps://doi.org/10.3390/molecules31203600openalex-snapshot
Synthetic Errors During Solid-Phase Phosphoramidite Synthesis of Oligonucleotides
inferred← citeshttps://doi.org/10.3390/nu14010173openalex-snapshot
Dietary Supplementation throughout Life with Non-Digestible Oligosaccharides and/or n-3 Poly-Unsaturated Fatty Acids in Healthy Mice Modulates the Gut–Immune System–Brain Axis
inferred← citeshttps://doi.org/10.3390/vetsci4020031openalex-snapshot
Detection and Characterization of Histamine-Producing Strains of Photobacterium damselae subsp. damselae Isolated from Mullets
inferred← citeshttps://doi.org/10.37349/edd.2022.00009openalex-snapshot
Probiotic human alcohol dehydrogenase-4 expressing bacteria protects from diet-induced obesity and metabolic impairment: a new concept of disease prevention
inferred← citeshttps://doi.org/10.5194/bg-12-7435-2015openalex-snapshot
Diazotroph community succession during the VAHINE mesocosm experiment (New Caledonia lagoon)
inferred← citeshttps://doi.org/10.5194/essd-17-393-2025openalex-snapshot
Global biogeography of N 2 -fixing microbes: nifH amplicon database and analytics workflow
inferred← citeshttps://doi.org/10.5194/essd-2024-163-rc2openalex-snapshot
Comment on essd-2024-163
inferred← citeshttps://doi.org/10.54588/cc.2025v30n1a9openalex-snapshot
The effectivity of rbcL marker to identify invasive alien plant species
inferred← citeshttps://doi.org/10.5858/arpa.2018-0092-oaopenalex-snapshot
High Frequency of MYD88 L265P Mutation in Primary Ocular Adnexal Marginal Zone Lymphoma and Its Clinicopathologic Correlation: A Study From a Single Institution
inferred← citeshttps://doi.org/10.6084/m9.figshare.12762632openalex-snapshot
Additional file 1 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)
inferred← citeshttps://doi.org/10.6084/m9.figshare.12762635openalex-snapshot
Additional file 2 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)
inferred← citeshttps://doi.org/10.6084/m9.figshare.12762638openalex-snapshot
Additional file 3 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)
inferred← citeshttps://doi.org/10.6084/m9.figshare.16530270openalex-snapshot
Additional file 1 of Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.21366165openalex-snapshot
Additional file 1 of Pesticide residue exposure provides different responses of the microbiomes of distinct cultures of the stored product pest mite Acarus siro
inferred← citeshttps://doi.org/10.6084/m9.figshare.21366168openalex-snapshot
Additional file 2 of Pesticide residue exposure provides different responses of the microbiomes of distinct cultures of the stored product pest mite Acarus siro
inferred← citeshttps://doi.org/10.6084/m9.figshare.23806056openalex-snapshot
Additional file 1 of Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.6084/m9.figshare.23806062openalex-snapshot
Additional file 2 of Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.6084/m9.figshare.23806065openalex-snapshot
Additional file 3 of Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.6084/m9.figshare.23806071openalex-snapshot
Additional file 4 of Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.6084/m9.figshare.23806074openalex-snapshot
Additional file 5 of Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.6084/m9.figshare.23806080openalex-snapshot
Additional file 6 of Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella
inferred← citeshttps://doi.org/10.7171/001c.157570openalex-snapshot
Using Carrier DNA in Ultra-Low Input Library Preparations for Next-Generation Sequencing
inferred← citeshttps://doi.org/10.7287/peerj.6570v0.1/reviews/1openalex-snapshot
Peer Review #1 of "PCR effects of melting temperature adjustment of individual primers in degenerate primer pools (v0.1)"
showing the first 200 of 210
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.