On the public citation graph

Comparative RNA-seq based transcriptomic analysis of Aspergillus nidulans recombinant strains overproducing heterologous glycoside hydrolases

0 signed · 79 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/mbo3.359openalex-snapshot

Autophagy is dispensable to overcome ER stress in the filamentous fungus Aspergillus niger

inferredcites →https://doi.org/10.1006/abio.1976.9999openalex-snapshot

A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-Dye Binding

inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

inferredcites →https://doi.org/10.1007/bf00166231openalex-snapshot

Overexpression of binding protein and disruption of the PMR1 gene synergistically stimulate secretion of bovine prochymosin but not plant Thaumatin in yeast

inferredcites →https://doi.org/10.1007/s00253-010-2672-6openalex-snapshot

Expression and export: recombinant protein production systems for Aspergillus

inferredcites →https://doi.org/10.1007/s00253-010-2937-0openalex-snapshot

Disruption of ten protease genes in the filamentous fungus Aspergillus oryzae highly improves production of heterologous proteins

inferredcites →https://doi.org/10.1007/s00253-014-6192-7openalex-snapshot

Unfolded protein response in filamentous fungi—implications in biotechnology

inferredcites →https://doi.org/10.1007/s00438-003-0965-5openalex-snapshot

The transcription factor HACA mediates the unfolded protein response in Aspergillus niger, and up-regulates its own transcription

inferredcites →https://doi.org/10.1007/s00438-004-1070-0openalex-snapshot

The ire1 and ptc2 genes involved in the unfolded protein response pathway in the filamentous fungus Trichoderma reesei

inferredcites →https://doi.org/10.1007/s11274-014-1682-4openalex-snapshot

Effect of earlier unfolded protein response and efficient protein disposal system on cellulase production in Rut C30

inferredcites →https://doi.org/10.1016/0003-2697(69)90335-2openalex-snapshot

Molecular weight estimation of polypeptides by SDS-polyacrylamide gel electrophoresis: Further data concerning resolving power and general considerations

inferredcites →https://doi.org/10.1016/0014-5793(95)01410-1openalex-snapshot

Protein disulfide isomerase mutant lacking its isomerase activity accelerates protein folding in the cell

inferredcites →https://doi.org/10.1016/b978-0-12-385114-7.00001-5openalex-snapshot

Methods for Investigating the UPR in Filamentous Fungi

inferredcites →https://doi.org/10.1016/b978-0-12-394382-8.00001-0openalex-snapshot

Heterologous Gene Expression in Filamentous Fungi

inferredcites →https://doi.org/10.1016/j.bbrc.2011.02.075openalex-snapshot

Autophagy delivers misfolded secretory proteins accumulated in endoplasmic reticulum to vacuoles in the filamentous fungus Aspergillus oryzae

inferredcites →https://doi.org/10.1016/j.biotechadv.2008.09.001openalex-snapshot

Developing Aspergillus as a host for heterologous expression

inferredcites →https://doi.org/10.1016/j.copbio.2007.09.001openalex-snapshot

Glycosylation engineering in yeast: the advent of fully humanized yeast

inferredcites →https://doi.org/10.1016/j.enzmictec.2008.07.010openalex-snapshot

Expression and high-yield production of extremely thermostable bacterial xylanaseB in Aspergillus niger

inferredcites →https://doi.org/10.1016/j.enzmictec.2012.04.008openalex-snapshot

High-yield secretion of multiple client proteins in Aspergillus

inferredcites →https://doi.org/10.1016/j.fgb.2008.07.022openalex-snapshot

Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans

inferredcites →https://doi.org/10.1016/j.fgb.2008.08.012openalex-snapshot

Effective lead selection for improved protein production in Aspergillus niger based on integrated genomics

inferredcites →https://doi.org/10.1016/j.gene.2016.08.018openalex-snapshot

Functional and transcriptomic analysis of the key unfolded protein response transcription factor HacA in Aspergillus oryzae

inferredcites →https://doi.org/10.1016/j.jbiotec.2004.04.035openalex-snapshot

Stress in recombinant protein producing yeasts

inferredcites →https://doi.org/10.1016/j.procbio.2014.12.018openalex-snapshot

Heterologous expression of cellobiohydrolases in filamentous fungi – An update on the current challenges, achievements and perspectives

inferredcites →https://doi.org/10.1016/j.tibtech.2005.06.002openalex-snapshot

Heterologous protein expression in filamentous fungi

inferredcites →https://doi.org/10.1016/j.ymben.2005.04.002openalex-snapshot

Analysis of unfolded protein response during single-chain antibody expression in Saccaromyces cerevisiae reveals different roles for BiP and PDI in folding

inferredcites →https://doi.org/10.1016/s0065-2660(08)60408-3openalex-snapshot

The Genetics of Aspergillus nidulans

inferredcites →https://doi.org/10.1016/s0092-8674(00)80369-4openalex-snapshot

The Transmembrane Kinase Ire1p Is a Site-Specific Endonuclease That Initiates mRNA Splicing in the Unfolded Protein Response

inferredcites →https://doi.org/10.1016/s0092-8674(00)80835-1openalex-snapshot

Functional and Genomic Analyses Reveal an Essential Coordination between the Unfolded Protein Response and ER-Associated Degradation

inferredcites →https://doi.org/10.1016/s0092-8674(01)00505-0openalex-snapshot

Block of HAC1 mRNA Translation by Long-Range Base Pairing Is Released by Cytoplasmic Splicing upon Induction of the Unfolded Protein Response

inferredcites →https://doi.org/10.1016/s0955-0674(02)00358-7openalex-snapshot

ER-associated degradation in protein quality control and cellular regulation

inferredcites →https://doi.org/10.1016/s1351-4180(14)70133-3openalex-snapshot

Global enzyme market to grow steadily and reach $7 bn by 2017

inferredcites →https://doi.org/10.1021/ac60147a030openalex-snapshot

Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar

inferredcites →https://doi.org/10.1038/415092aopenalex-snapshot

IRE1 couples endoplasmic reticulum load to secretory capacity by processing the XBP-1 mRNA

inferredcites →https://doi.org/10.1038/nm970openalex-snapshot

A transgenic mouse model for monitoring endoplasmic reticulum stress

inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03363.xopenalex-snapshot

Activation mechanisms of the HACI‐mediated unfolded protein response in filamentous fungi

inferredcites →https://doi.org/10.1073/pnas.0800053105openalex-snapshot

HSP90/70 chaperones are required for rapid nucleosome removal upon induction of the GAL genes of yeast

inferredcites →https://doi.org/10.1073/pnas.0911617107openalex-snapshot

Orm1 and Orm2 are conserved endoplasmic reticulum membrane proteins regulating lipid homeostasis and protein quality control

inferredcites →https://doi.org/10.1074/jbc.m302372200openalex-snapshot

The Effects of Drugs Inhibiting Protein Secretion in the Filamentous Fungus Trichoderma reesei

inferredcites →https://doi.org/10.1091/mbc.e02-10-0682openalex-snapshot

A Novel Dynein Light Intermediate Chain Colocalizes with the Retrograde Motor for Intraflagellar Transport at Sites of Axoneme Assembly inChlamydomonasand Mammalian Cells

inferredcites →https://doi.org/10.1093/bfgp/elu027openalex-snapshot

The importance of connections between the cell wall integrity pathway and the unfolded protein response in filamentous fungi

inferredcites →https://doi.org/10.1093/bioinformatics/bti551openalex-snapshot

BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks

inferredcites →https://doi.org/10.1093/bioinformatics/bts611openalex-snapshot

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/nar/gkh894openalex-snapshot

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

inferredcites →https://doi.org/10.1093/nar/gkr1029openalex-snapshot

Saccharomyces Genome Database: the genomics resource of budding yeast

inferredcites →https://doi.org/10.1093/nar/gkr853openalex-snapshot

PomBase: a comprehensive online resource for fission yeast

inferredcites →https://doi.org/10.1093/nar/gkt1029openalex-snapshot

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

inferredcites →https://doi.org/10.1099/mic.0.062935-0openalex-snapshot

Transcriptome changes initiated by carbon starvation in Aspergillus nidulans

inferredcites →https://doi.org/10.1111/j.1365-2958.2004.04236.xopenalex-snapshot

Endoplasmic reticulum stress leads to the selective transcriptional downregulation of the glucoamylase gene in Aspergillus niger

inferredcites →https://doi.org/10.1128/aem.03087-09openalex-snapshot

Enhanced Production and Secretion of Heterologous Proteins by the Filamentous Fungus Aspergillus oryzae via Disruption of Vacuolar Protein Sorting Receptor Gene Aovps10

inferredcites →https://doi.org/10.1128/aem.69.4.2065-2072.2003openalex-snapshot

Effects of Inactivation and Constitutive Expression of the Unfolded- Protein Response Pathway on Protein Production in the Yeast Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1128/aem.71.5.2737-2747.2005openalex-snapshot

Transcriptome Analysis of Recombinant Protein Secretion by Aspergillus nidulans and the Unfolded-Protein Response In Vivo

inferredcites →https://doi.org/10.1128/ec.00040-09openalex-snapshot

Aspergillus nidulans Protein O -Mannosyltransferases Play Roles in Cell Wall Integrity and Developmental Patterning

inferredcites →https://doi.org/10.1128/mcb.17.1.318openalex-snapshot

In Vivo Analysis of the Hsp90 Cochaperone Sti1 (p60)

inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot

WGCNA: an R package for weighted correlation network analysis

inferredcites →https://doi.org/10.1186/1471-2164-13-2openalex-snapshot

Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development

inferredcites →https://doi.org/10.1186/1471-2164-13-350openalex-snapshot

Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress

inferredcites →https://doi.org/10.1186/1471-2164-13-701openalex-snapshot

The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger

inferredcites →https://doi.org/10.1186/1471-2164-15-159openalex-snapshot

Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus

inferredcites →https://doi.org/10.1186/1471-2164-15-523openalex-snapshot

A genomic survey of proteases in Aspergilli

inferredcites →https://doi.org/10.1186/1471-2164-6-1openalex-snapshot

Bioinformatic mapping of AlkB homology domains in viruses

inferredcites →https://doi.org/10.1186/1471-2164-6-141openalex-snapshot

The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1186/1471-2164-7-244openalex-snapshot

Identification and comparative analysis of sixteen fungal peptidyl-prolyl cis/trans isomerase repertoires

inferredcites →https://doi.org/10.1186/1471-2164-8-158openalex-snapshot

Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger

inferredcites →https://doi.org/10.1186/1741-7007-10-16openalex-snapshot

Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress

inferredcites →https://doi.org/10.1186/1752-0509-8-73openalex-snapshot

Genome-scale analysis of the high-efficient protein secretion system of Aspergillus oryzae

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1186/s12864-015-1224-yopenalex-snapshot

Tracking the best reference genes for RT-qPCR data normalization in filamentous fungi

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s13068-016-0547-5openalex-snapshot

Genome wide analysis of protein production load in Trichoderma reesei

inferredcites →https://doi.org/10.1186/s40694-014-0005-8openalex-snapshot

The capacity of Aspergillus niger to sense and respond to cell wall stress requires at least three transcription factors: RlmA, MsnA and CrzA

inferredcites →https://doi.org/10.1186/s40694-016-0021-yopenalex-snapshot

Effect of secretory pathway gene overexpression on secretion of a fluorescent reporter protein in Aspergillus nidulans

inferredcites →https://doi.org/10.1186/s40694-016-0024-8openalex-snapshot

Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper

inferredcites →https://doi.org/10.1371/journal.ppat.1002515openalex-snapshot

Indifferent, Affectionate, or Deceitful: Lifestyles and Secretomes of Fungi

inferredcites →https://doi.org/10.1371/journal.ppat.1002660openalex-snapshot

T Regulatory Cells Control Susceptibility to Invasive Pneumococcal Pneumonia in Mice

inferredcites →https://doi.org/10.1534/genetics.112.140319openalex-snapshot

Chaperoning the Chaperone: A Role for the Co-chaperone Cpr7 in Modulating Hsp90 Function in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.3389/fmicb.2014.00075openalex-snapshot

Frontiers in Microbiology

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-030-41870-0_9openalex-snapshot

Bioengineering Fungi and Yeast for the Production of Enzymes, Metabolites, and Value-Added Compounds

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.