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Bayesian model comparison for rare variant association studies

https://doi.org/10.1101/257162
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Effect of a Monoclonal Antibody to PCSK9 on Low-Density Lipoprotein Cholesterol Levels in Statin-Intolerant Patients
inferredcites →https://doi.org/10.1007/s00439-015-1559-0openalex-snapshot
Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up
inferredcites →https://doi.org/10.1016/j.ajhg.2011.05.029openalex-snapshot
Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test
inferredcites →https://doi.org/10.1016/j.ajhg.2013.06.020openalex-snapshot
RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference
inferredcites →https://doi.org/10.1016/j.ajhg.2014.06.009openalex-snapshot
Rare-Variant Association Analysis: Study Designs and Statistical Tests
inferredcites →https://doi.org/10.1016/j.ajhg.2020.01.017openalex-snapshot
Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci
inferredcites →https://doi.org/10.1016/j.atherosclerosis.2016.07.063openalex-snapshot
Loss-of-function mutations in APOC3, remnant cholesterol, LDL cholesterol, and risk of ischemic vascular disease
inferredcites →https://doi.org/10.1016/j.cell.2016.10.042openalex-snapshot
The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease
inferredcites →https://doi.org/10.1016/j.cell.2019.10.004openalex-snapshot
Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa
inferredcites →https://doi.org/10.1016/j.cell.2020.06.045openalex-snapshot
Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations
inferredcites →https://doi.org/10.1016/j.cell.2020.08.008openalex-snapshot
The Polygenic and Monogenic Basis of Blood Traits and Diseases
inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot
A map of human genome variation from population-scale sequencing
inferredcites →https://doi.org/10.1038/nature10659openalex-snapshot
New gene functions in megakaryopoiesis and platelet formation
inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot
An integrated map of genetic variation from 1,092 human genomes
inferredcites →https://doi.org/10.1038/nature13695openalex-snapshot
Saturation editing of genomic regions by multiplex homology-directed repair
inferredcites →https://doi.org/10.1038/nature13917openalex-snapshot
Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
inferredcites →https://doi.org/10.1038/nature18964openalex-snapshot
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
inferredcites →https://doi.org/10.1038/ncomms14357openalex-snapshot
Connecting genetic risk to disease end points through the human blood plasma proteome
inferredcites →https://doi.org/10.1038/ng.2795openalex-snapshot
Common variants associated with plasma triglycerides and risk for coronary artery disease
inferredcites →https://doi.org/10.1038/ng.2852openalex-snapshot
Meta-analysis of gene-level tests for rare variant association
inferredcites →https://doi.org/10.1038/ng.3406openalex-snapshot
An atlas of genetic correlations across human diseases and traits
inferredcites →https://doi.org/10.1038/ng.531openalex-snapshot
Genome-wide association study of hematological and biochemical traits in a Japanese population
inferredcites →https://doi.org/10.1038/ng.952openalex-snapshot
Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease
inferredcites →https://doi.org/10.1038/ng1509openalex-snapshot
Low LDL cholesterol in individuals of African descent resulting from frequent nonsense mutations in PCSK9
inferredcites →https://doi.org/10.1038/nrg3461openalex-snapshot
Pleiotropy in complex traits: challenges and strategies
inferredcites →https://doi.org/10.1038/s41467-018-07691-zopenalex-snapshot
Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability
inferredcites →https://doi.org/10.1038/s41467-018-08008-wopenalex-snapshot
Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity
inferredcites →https://doi.org/10.1038/s41467-018-08147-0openalex-snapshot
A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia
inferredcites →https://doi.org/10.1038/s41467-019-09861-zopenalex-snapshot
Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis
inferredcites →https://doi.org/10.1038/s41467-020-20086-3openalex-snapshot
Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease
inferredcites →https://doi.org/10.1038/s41586-019-1310-4openalex-snapshot
Genetic analyses of diverse populations improves discovery for complex traits
inferredcites →https://doi.org/10.1038/s41588-018-0047-6openalex-snapshot
Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases
inferredcites →https://doi.org/10.1038/s41588-018-0064-5openalex-snapshot
A large electronic-health-record-based genome-wide study of serum lipids
inferredcites →https://doi.org/10.1038/s41588-018-0100-5openalex-snapshot
Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability
inferredcites →https://doi.org/10.1038/s41588-019-0378-yopenalex-snapshot
Multi-ancestry genome-wide gene–smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids
inferredcites →https://doi.org/10.1038/s41588-019-0383-1openalex-snapshot
Measuring intolerance to mutation in human genetics
inferredcites →https://doi.org/10.1038/s41588-020-00757-zopenalex-snapshot
Genetics of 35 blood and urine biomarkers in the UK Biobank
inferredcites →https://doi.org/10.1038/s41598-018-37832-9openalex-snapshot
The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits
inferredcites →https://doi.org/10.1038/srep45040openalex-snapshot
1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function
inferredcites →https://doi.org/10.1056/nejmoa054013openalex-snapshot
Sequence Variations in PCSK9, Low LDL, and Protection against Coronary Heart Disease
inferredcites →https://doi.org/10.1056/nejmoa1307095openalex-snapshot
Loss-of-Function Mutations in APOC3, Triglycerides, and Coronary Disease
inferredcites →https://doi.org/10.1056/nejmx140063openalex-snapshot
Loss-of-Function Mutations in APOC3, Triglycerides, and Coronary Disease
inferredcites →https://doi.org/10.1073/pnas.1410428111openalex-snapshot
Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes
inferredcites →https://doi.org/10.1074/jbc.r109.025544openalex-snapshot
Glucose-6-phosphatase Catalytic Subunit Gene Family
inferredcites →https://doi.org/10.1093/bioinformatics/btt409openalex-snapshot
Assessing association between protein truncating variants and quantitative traits
inferredcites →https://doi.org/10.1093/bioinformatics/btw052openalex-snapshot
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bty999openalex-snapshot
Global Biobank Engine: enabling genotype-phenotype browsing for biobank summary statistics
inferredcites →https://doi.org/10.1093/hmg/ddq281openalex-snapshot
Genome-wide association of serum bilirubin levels in Korean population
inferredcites →https://doi.org/10.1093/hmg/ddz243openalex-snapshot
A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin–creatinine ratio
inferredcites →https://doi.org/10.1126/science.1161524openalex-snapshot
A Null Mutation in Human APOC3 Confers a Favorable Plasma Lipid Profile and Apparent Cardioprotection
inferredcites →https://doi.org/10.1126/science.1167728openalex-snapshot
Rare Variants of IFIH1 , a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes
inferredcites →https://doi.org/10.1126/science.1215040openalex-snapshot
A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes
inferredcites →https://doi.org/10.1126/science.1261877openalex-snapshot
Effect of predicted protein-truncating genetic variants on the human transcriptome
inferredcites →https://doi.org/10.1126/science.aay5012openalex-snapshot
Insights into human genetic variation and population history from 929 diverse genomes
inferredcites →https://doi.org/10.1161/hypertensionaha.120.16547openalex-snapshot
Urate, Blood Pressure, and Cardiovascular Disease
inferredcites →https://doi.org/10.1186/1471-2105-12-246openalex-snapshot
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
inferredcites →https://doi.org/10.1186/s12863-019-0765-5openalex-snapshot
Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations
inferredcites →https://doi.org/10.1186/s12864-020-6626-9openalex-snapshot
Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics
inferredcites →https://doi.org/10.1186/s13059-016-0974-4openalex-snapshot
The Ensembl Variant Effect Predictor
inferredcites →https://doi.org/10.1194/jlr.m076232openalex-snapshot
A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms
inferredcites →https://doi.org/10.1371/journal.pgen.1001035openalex-snapshot
Genome-Wide Meta-Analysis for Serum Calcium Identifies Significantly Associated SNPs near the Calcium-Sensing Receptor (CASR) Gene
inferredcites →https://doi.org/10.1371/journal.pgen.1001322openalex-snapshot
Testing for an Unusual Distribution of Rare Variants
inferredcites →https://doi.org/10.1371/journal.pgen.1002254openalex-snapshot
Pervasive Sharing of Genetic Effects in Autoimmune Disease
inferredcites →https://doi.org/10.1371/journal.pgen.1003509openalex-snapshot
Imputation-Based Meta-Analysis of Severe Malaria in Three African Populations
inferredcites →https://doi.org/10.1371/journal.pgen.1003694openalex-snapshot
A Flexible Approach for the Analysis of Rare Variants Allowing for a Mixture of Effects on Binary or Quantitative Traits
inferredcites →https://doi.org/10.1371/journal.pgen.1006760openalex-snapshot
Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos
inferredcites →https://doi.org/10.1371/journal.pmed.1002383openalex-snapshot
Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis
inferredcites →https://doi.org/10.1371/journal.pmed.1003062openalex-snapshot
Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis
inferredcites →https://doi.org/10.1371/journal.pone.0229374openalex-snapshot
A genome-wide association study on liver enzymes in Korean population

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ajhg.2020.03.007openalex-snapshot
Assessing Digital Phenotyping to Enhance Genetic Studies of Human Diseases
inferred← citeshttps://doi.org/10.1038/s41431-020-0697-6openalex-snapshot
Accurate fetal variant calling in the presence of maternal cell contamination
inferred← citeshttps://doi.org/10.1101/2021.11.22.469622openalex-snapshot
Single-cell dissection of obesity-exercise axis in adipose-muscle tissues
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008682openalex-snapshot
Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma
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