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Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant—fungus networks

https://doi.org/10.1101/269563
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Community composition of root‐associated fungi in a Q uercus ‐dominated temperate forest: “codominance” of mycorrhizal and root‐endophytic fungi
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Patterns and regulation of mycorrhizal plant and fungal diversity
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The checkerboard score and species distributions
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Patterns and regulation of mycorrhizal plant and fungal diversity
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Arbuscular mycorrhizas and biological control of soil-borne plant pathogens - an overview of the mechanisms involved
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Dark septate endophytes - are they mycorrhizal?
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The continuum concept remains a useful framework for studying mycorrhizal functioning
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Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent
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Specialization, Constraints, and Conflicting Interests in Mutualistic Networks
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A straightforward computational approach for measuring nestedness using quantitative matrices
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Network perspectives of ectomycorrhizal associations
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FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
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Slowing PCR ramp speed reduces chimera formation from environmental samples
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Rooting theories of plant community ecology in microbial interactions
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Reproductive isolation among cryptic species in the ectomycorrhizal genus Strobilomyces: Population-level CAPS marker-based genetic analysis
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Parasitism of non-host plants by the mycorrhizal fungus Tuber melanosporum
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Suppression of Verticillium Wilt in Eggplant by Some Fungal Root Endophytes
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Soil pathogens and spatial patterns of seedling mortality in a temperate tree
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Low diversity and high host preference of ectomycorrhizal fungi in Western Amazonia, a neotropical biodiversity hotspot
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The architecture of mutualistic networks minimizes competition and increases biodiversity
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Negative plant–soil feedback predicts tree-species relative abundance in a tropical forest
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Stability criteria for complex ecosystems
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The ghost of nestedness in ecological networks
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Assembly of complex plant–fungus networks
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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
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Molecular diversity of arbuscular mycorrhizal fungi and patterns of host association over time and space in a tropical forest
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Vesicular–arbuscular mycorrhizal infection of Quercus rubra seedlings
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The modularity of pollination networks
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A DNA barcode for land plants
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Endemism and functional convergence across the North American soil mycobiome
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The nested assembly of plant–animal mutualistic networks
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Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition
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Search and clustering orders of magnitude faster than BLAST
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Host Specificity in Ectomycorrhizal Communities: What Do the Exceptions Tell Us?
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Network modules and hubs in plant-root fungal biomes
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Negative feedback within a mutualism: host–specific growth of mycorrhizal fungi reduces plant benefit
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MEGAN analysis of metagenomic data
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Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient
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Species abundance and asymmetric interaction strength in ecological networks
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Towards global patterns in the diversity and community structure of ectomycorrhizal fungi
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The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01430.xopenalex-snapshot
A meta‐analysis of context‐dependency in plant response to inoculation with mycorrhizal fungi
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THE STRUCTURE AND FUNCTION OF THE VEGETATIVE MYCELIUM OF ECTOMYCORRHIZAL PLANTS
inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01545.xopenalex-snapshot
Ectomycorrhizal networks and seedling establishment during early primary succession
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.02920.xopenalex-snapshot
Large‐scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03134.xopenalex-snapshot
General latitudinal gradient of biodiversity is reversed in ectomycorrhizal fungi
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03160.xopenalex-snapshot
The UNITE database for molecular identification of fungi – recent updates and future perspectives
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The online database Maarj AM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03611.xopenalex-snapshot
A meta‐analysis of plant responses to dark septate root endophytes
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.04044.xopenalex-snapshot
Using ecological network theory to evaluate the causes and consequences of arbuscular mycorrhizal community structure
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.04045.xopenalex-snapshot
The network structure of plant–arbuscular mycorrhizal fungi
inferredcites →https://doi.org/10.1111/j.1469-8137.2012.04163.xopenalex-snapshot
On the application of network theory to arbuscular mycorrhizal fungi–plant interactions: the importance of basic assumptions
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inferredcites →https://doi.org/10.1111/mec.12481openalex-snapshot
Towards a unified paradigm for sequence‐based identification of fungi
inferredcites →https://doi.org/10.1111/mec.13655openalex-snapshot
Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions of Rhizophagus irregularis and Gigaspora margarita is high and isolate‐dependent
inferredcites →https://doi.org/10.1111/mec.13680openalex-snapshot
Ericaceous plant–fungus network in a harsh alpine–subalpine environment
inferredcites →https://doi.org/10.1111/nph.12170openalex-snapshot
Biogeography of ectomycorrhizal fungi associated with alders ( A lnus spp.) in relation to biotic and abiotic variables at the global scale
inferredcites →https://doi.org/10.1111/nph.12640openalex-snapshot
Coexisting orchid species have distinct mycorrhizal communities and display strong spatial segregation
inferredcites →https://doi.org/10.1111/nph.13068openalex-snapshot
Community assembly of ectomycorrhizal fungi along a subtropical secondary forest succession
inferredcites →https://doi.org/10.1111/nph.14695openalex-snapshot
Historical biome distribution and recent human disturbance shape the diversity of arbuscular mycorrhizal fungi
inferredcites →https://doi.org/10.1111/nph.14895openalex-snapshot
Host preference and network properties in biotrophic plant–fungal associations
inferredcites →https://doi.org/10.1126/sciadv.1500291openalex-snapshot
Below-ground plant–fungus network topology is not congruent with above-ground plant–animal network topology
inferredcites →https://doi.org/10.1126/science.1094875openalex-snapshot
Ecological Linkages Between Aboveground and Belowground Biota
inferredcites →https://doi.org/10.1126/science.1220529openalex-snapshot
Diversity of Interaction Types and Ecological Community Stability
inferredcites →https://doi.org/10.1126/science.1253497openalex-snapshot
On the structural stability of mutualistic systems
inferredcites →https://doi.org/10.1126/science.1256688openalex-snapshot
Global diversity and geography of soil fungi
inferredcites →https://doi.org/10.1126/science.aam5678openalex-snapshot
Plant diversity increases with the strength of negative density dependence at the global scale
inferredcites →https://doi.org/10.1139/b04-171openalex-snapshot
Microfungal endophytes in roots
inferredcites →https://doi.org/10.1146/annurev.ecolsys.39.110707.173430openalex-snapshot
Is There a Latitudinal Gradient in the Importance of Biotic Interactions?
inferredcites →https://doi.org/10.1146/annurev.py.28.090190.001035openalex-snapshot
Long-Distance Dispersion of Rust Pathogens
inferredcites →https://doi.org/10.1186/1472-6785-6-9openalex-snapshot
Measuring specialization in species interaction networks.
inferredcites →https://doi.org/10.1371/journal.pone.0040863openalex-snapshot
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
inferredcites →https://doi.org/10.1371/journal.pone.0076910openalex-snapshot
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
inferredcites →https://doi.org/10.1371/journal.pone.0078248openalex-snapshot
Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest
inferredcites →https://doi.org/10.1371/journal.pone.0083241openalex-snapshot
Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages
inferredcites →https://doi.org/10.1371/journal.pone.0090234openalex-snapshot
Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0098679openalex-snapshot
ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software
inferredcites →https://doi.org/10.1371/journal.pone.0125550openalex-snapshot
Contrasting Diversity and Host Association of Ectomycorrhizal Basidiomycetes versus Root-Associated Ascomycetes in a Dipterocarp Rainforest
inferredcites →https://doi.org/10.1609/icwsm.v3i1.13937openalex-snapshot
Gephi: An Open Source Software for Exploring and Manipulating Networks
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MAINTENANCE OF DIVERSITY WITHIN PLANT COMMUNITIES: SOIL PATHOGENS AS AGENTS OF NEGATIVE FEEDBACK
inferredcites →https://doi.org/10.1890/05-1173openalex-snapshot
COMMON ECTOMYCORRHIZAL NETWORKS MAY MAINTAIN MONODOMINANCE IN A TROPICAL RAIN FOREST
inferredcites →https://doi.org/10.1890/05-1459openalex-snapshot
DIVERSITY AND HOST RANGE OF FOLIAR FUNGAL ENDOPHYTES: ARE TROPICAL LEAVES BIODIVERSITY HOTSPOTS?
inferredcites →https://doi.org/10.2174/1874213000902010007openalex-snapshot
Indices, Graphs and Null Models: Analyzing Bipartite Ecological Networks
inferredcites →https://doi.org/10.2307/2259591openalex-snapshot
Seed Dispersal of the Tropical Tree, Platypodium Elegans, and the Escape of its Seedlings from Fungal Pathogens
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The Unified Neutral Theory of Biodiversity and Biogeography
inferredcites →https://doi.org/10.3732/ajb.1000298openalex-snapshot
The Fungi: 1, 2, 3 … 5.1 million species?
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The geographic mosaic of coevolution
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The Geographic Mosaic of Coevolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/270371openalex-snapshot
Network hubs in root-associated fungal metacommunities
inferred← citeshttps://doi.org/10.1186/s40168-018-0497-1openalex-snapshot
Network hubs in root-associated fungal metacommunities
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