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Evolutionary inferences about quantitative traits are affected by underlying genealogical discordance

https://doi.org/10.1101/276642
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology
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Sensitivity of quantitative traits to mutational effects and number of loci
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The genomic substrate for adaptive radiation in African cichlid fish
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Diversity spurs diversification in ecological communities
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Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
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Hemiplasy: A New Term in the Lexicon of Phylogenetics
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Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data
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Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
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Generating samples under a Wright–Fisher neutral model of genetic variation
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GEIGER: investigating evolutionary radiations
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EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
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AN ANALYSIS OF VARIABILITY IN NUMBER OF DIGITS IN AN INBRED STRAIN OF GUINEA PIGS
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Bayesian Estimation of Concordance among Gene Trees
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Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time
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The Comparative Method in Evolutionary Biology
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Relationships between gene trees and species trees.
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Phylogenetic Analysis of Covariance by Computer Simulation
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Gene Trees in Species Trees
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Gene Tree Discordance Causes Apparent Substitution Rate Variation
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Why Concatenation Fails Near the Anomaly Zone
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Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters
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Using the quantitative genetic threshold model for inferences between and within species
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Trait Evolution on Phylogenetic Networks
inferredcites →https://doi.org/10.1101/gr.114751.110openalex-snapshot
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
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Irrational exuberance for resolved species trees
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TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD
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NATURAL SELECTION AND RANDOM GENETIC DRIFT IN PHENOTYPIC EVOLUTION
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TESTING THE CONSTANT-RATE NEUTRAL ALLELE MODEL WITH PROTEIN SEQUENCE DATA
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LIKELIHOOD OF ANCESTOR STATES IN ADAPTIVE RADIATION
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
inferredcites →https://doi.org/10.1126/science.1251385openalex-snapshot
Comparative genomics reveals insights into avian genome evolution and adaptation
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110411-160331openalex-snapshot
Evolutionary Inferences from Phylogenies: A Review of Methods
inferredcites →https://doi.org/10.1371/journal.pbio.1002224openalex-snapshot
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
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Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1371/journal.pgen.0020173openalex-snapshot
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1371/journal.pgen.1000729openalex-snapshot
Fine-Scale Phylogenetic Discordance across the House Mouse Genome
inferredcites →https://doi.org/10.5860/choice.29-5104openalex-snapshot
The comparative method in evolutionary biology

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s13752-024-00478-0openalex-snapshot
Vindicating Lineage Eliminativism
inferred← citeshttps://doi.org/10.1101/275446openalex-snapshot
Bayesian and likelihood placement of fossils on phylogenies from quantitative morphometries
inferred← citeshttps://doi.org/10.31390/gradschool_dissertations.5415openalex-snapshot
Quantifying Structure and Variation in Complex Phylogenetic Data
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