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Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree
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T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
inferredcites →https://doi.org/10.1006/mpev.2000.0810openalex-snapshot
Molecular Evolution of the Histone 3 Multigene Family in the Drosophila melanogaster Species Subgroup
inferredcites →https://doi.org/10.1006/mpev.2001.1053openalex-snapshot
Phylogeny of the Subgenus Sophophora (Diptera: Drosophilidae) Based on Combined Analysis of Nuclear and Mitochondrial Sequences
inferredcites →https://doi.org/10.1006/tpbi.1997.1348openalex-snapshot
Maximum Likelihood Estimation of Population Divergence Times and Population Phylogenies under the Infinite Sites Model
inferredcites →https://doi.org/10.1006/tpbi.2001.1568openalex-snapshot
The Probability of Topological Concordance of Gene Trees and Species Trees
inferredcites →https://doi.org/10.1007/bf00285965openalex-snapshot
The distribution of satellite and main-band DNA components in the melanogaster species subgroup of Drosophila
inferredcites →https://doi.org/10.1007/bf01734359openalex-snapshot
Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1007/bf02100996openalex-snapshot
Mitochondrial DNA evolution in themelanogaster species subgroup ofDrosophila
inferredcites →https://doi.org/10.1007/bf02193630openalex-snapshot
Mitochondrial DNA sequence divergence in theMelanogaster and oriental species subgroups ofDrosophila
inferredcites →https://doi.org/10.1007/bf02603075openalex-snapshot
On the rate of DNA sequence evolution inDrosophila
inferredcites →https://doi.org/10.1007/s00018-005-4539-zopenalex-snapshot
Lateral gene transfer in eukaryotes
inferredcites →https://doi.org/10.1007/s00239-002-2370-9openalex-snapshot
Functional Constraints of the Cu,Zn Superoxide Dismutase in Species of the Drosophila melanogaster Subgroup and Phylogenetic Analysis
inferredcites →https://doi.org/10.1007/s00239-003-2510-xopenalex-snapshot
Molecular Phylogeny of the Drosophila melanogaster Species Subgroup
inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot
Phylogenomics: the beginning of incongruence?
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Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test
inferredcites →https://doi.org/10.1016/j.ympev.2005.02.018openalex-snapshot
The phylogeny of the subgroups within the melanogaster species group: Likelihood tests on COI and COII sequences and a Bayesian estimate of phylogeny
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Rare genomic changes as a tool for phylogenetics
inferredcites →https://doi.org/10.1016/s0169-5347(01)02326-6openalex-snapshot
Prospects for nuclear gene phylogeography
inferredcites →https://doi.org/10.1016/s1055-7903(02)00226-9openalex-snapshot
Phylogeny of Drosophilinae (Diptera: Drosophilidae), with comments on combined analysis and character support
inferredcites →https://doi.org/10.1016/s1055-7903(03)00057-5openalex-snapshot
The root of the mammalian tree inferred from whole mitochondrial genomes
inferredcites →https://doi.org/10.1038/nature02053openalex-snapshot
Genome-scale approaches to resolving incongruence in molecular phylogenies
inferredcites →https://doi.org/10.1038/nature04562openalex-snapshot
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
inferredcites →https://doi.org/10.1038/nrg795openalex-snapshot
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01637.xopenalex-snapshot
Statistical phylogeography
inferredcites →https://doi.org/10.1073/pnas.92.24.11317openalex-snapshot
Inferring phylogenies from DNA sequences of unequal base compositions.
inferredcites →https://doi.org/10.1073/pnas.95.11.5899openalex-snapshot
Estimation of evolutionary distances under stationary and nonstationary models of nucleotide substitution
inferredcites →https://doi.org/10.1073/pnas.97.9.4453openalex-snapshot
The new animal phylogeny: Reliability and implications
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R: A Language for Data Analysis and Graphics
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Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?
inferredcites →https://doi.org/10.1080/10635150290102339openalex-snapshot
Increased Taxon Sampling Greatly Reduces Phylogenetic Error
inferredcites →https://doi.org/10.1080/10635150290102357openalex-snapshot
Increased Taxon Sampling Is Advantageous for Phylogenetic Inference
inferredcites →https://doi.org/10.1080/10635150290102410openalex-snapshot
Phylogeny of the Oriental Drosophila melanogaster Species Group: A Multilocus Reconstruction
inferredcites →https://doi.org/10.1080/10635150500234609openalex-snapshot
An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
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An Empirical Examination of the Utility of Codon-Substitution Models in Phylogeny Reconstruction
inferredcites →https://doi.org/10.1080/10635150500354928openalex-snapshot
Inferring Phylogeny Despite Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1080/10635150590945368openalex-snapshot
Hidden Likelihood Support in Genomic Data: Can Forty-Five Wrongs Make a Right?
inferredcites →https://doi.org/10.1080/106351599260409openalex-snapshot
Stability of Cladistic Relationships between Cetacea and Higher-Level Artiodactyl Taxa
inferredcites →https://doi.org/10.1086/318206openalex-snapshot
Genomic Divergences between Humans and Other Hominoids and the Effective Population Size of the Common Ancestor of Humans and Chimpanzees
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/btg213openalex-snapshot
Detecting putative orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/bti1127openalex-snapshot
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
inferredcites →https://doi.org/10.1093/genetics/105.2.437openalex-snapshot
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/118.4.671openalex-snapshot
Rates and patterns of scnDNA and mtDNA divergence within the Drosophila melanogaster subgroup.
inferredcites →https://doi.org/10.1093/genetics/122.4.957openalex-snapshot
Gene genealogy in three related populations: consistency probability between gene and population trees.
inferredcites →https://doi.org/10.1093/genetics/127.2.429openalex-snapshot
Inferences of species phylogeny in relation to segregation of ancient polymorphisms.
inferredcites →https://doi.org/10.1093/genetics/130.4.855openalex-snapshot
Rates of synonymous substitution and base composition of nuclear genes in Drosophila.
inferredcites →https://doi.org/10.1093/genetics/131.2.509openalex-snapshot
Gene trees, species trees and the segregation of ancestral alleles.
inferredcites →https://doi.org/10.1093/genetics/132.4.1161openalex-snapshot
Population genetics of polymorphism and divergence.
inferredcites →https://doi.org/10.1093/genetics/141.1.223openalex-snapshot
Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup: concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation.
inferredcites →https://doi.org/10.1093/genetics/142.2.507openalex-snapshot
Differences in Crossover Frequency and Distribution Among Three Sibling Species of Drosophila
inferredcites →https://doi.org/10.1093/genetics/156.4.1837openalex-snapshot
Linkage Disequilibria and the Site Frequency Spectra in the su(s) and su(wa) Regions of the Drosophila melanogaster X Chromosome
inferredcites →https://doi.org/10.1093/genetics/156.4.1913openalex-snapshot
The Population Genetics of the Origin and Divergence of the Drosophila simulans Complex Species
inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
inferredcites →https://doi.org/10.1093/genetics/160.2.595openalex-snapshot
Interactions Between Natural Selection, Recombination and Gene Density in the Genes of Drosophila
inferredcites →https://doi.org/10.1093/genetics/162.4.2025openalex-snapshot
Approximate Bayesian Computation in Population Genetics
inferredcites →https://doi.org/10.1093/genetics/163.1.395openalex-snapshot
Estimating Ancestral Population Sizes and Divergence Times
inferredcites →https://doi.org/10.1093/genetics/164.4.1645openalex-snapshot
Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
inferredcites →https://doi.org/10.1093/genetics/165.3.1289openalex-snapshot
Linkage Disequilibrium Patterns Across a Recombination Gradient in African Drosophila melanogaster
inferredcites →https://doi.org/10.1093/genetics/165.4.1843openalex-snapshot
Selective Constraints on Intron Evolution in Drosophila
inferredcites →https://doi.org/10.1093/genetics/68.4.571openalex-snapshot
LINKAGE DISEQUILIBRIUM BETWEEN TWO SEGREGATING NUCLEOTIDE SITES UNDER THE STEADY FLUX OF MUTATIONS IN A FINITE POPULATION
inferredcites →https://doi.org/10.1093/molbev/msh137openalex-snapshot
Genome-Scale Phylogeny and the Detection of Systematic Biases
inferredcites →https://doi.org/10.1093/molbev/msh145openalex-snapshot
Using Consensus Networks to Visualize Contradictory Evidence for Species Phylogeny
inferredcites →https://doi.org/10.1093/molbev/msh156openalex-snapshot
An Assessment of Accuracy, Error, and Conflict with Support Values from Genome-Scale Phylogenetic Data
inferredcites →https://doi.org/10.1093/molbev/msi121openalex-snapshot
More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy
inferredcites →https://doi.org/10.1093/molbev/msj061openalex-snapshot
Improved Consensus Network Techniques for Genome-Scale Phylogeny
inferredcites →https://doi.org/10.1093/molbev/msj079openalex-snapshot
Accuracy of Coalescent Likelihood Estimates: Do We Need More Sites, More Sequences, or More Loci?
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1093/nar/gki062openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/gks1189openalex-snapshot
Database resources of the National Center for Biotechnology Information
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Progress and Prospects in Evolutionary Biology
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003811openalex-snapshot
Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003841openalex-snapshot
Local Changes in GC/AT Substitution Biases and in Crossover Frequencies on Drosophila Chromosomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025695openalex-snapshot
How often do wrong models produce better phylogenies?
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025813openalex-snapshot
Can three incongruence tests predict when data should be combined?
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025991openalex-snapshot
Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026236openalex-snapshot
Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
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On the detection of nonrandom associations between DNA polymorphisms in natural populations of Drosophila.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040110openalex-snapshot
The molecular evolution of the alcohol dehydrogenase and alcohol dehydrogenase-related genes in the Drosophila melanogaster species subgroup.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040131openalex-snapshot
Comparative evolutionary analysis of rDNA ITS regions in Drosophila.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040214openalex-snapshot
Molecular phylogeny and divergence times of drosophilid species.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040261openalex-snapshot
The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040301openalex-snapshot
Mitochondrial DNA differentiation during the speciation process in Peromyscus.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot
Relationships between gene trees and species trees.
inferredcites →https://doi.org/10.1093/sysbio/42.2.182openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
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Relationships within the melanogaster species subgroup of the genus Drosophila ( Sophophora ) - II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences
inferredcites →https://doi.org/10.1101/gr.10.4.547openalex-snapshot
Using GeneWise in the Drosophila Annotation Experiment
inferredcites →https://doi.org/10.1101/gr.1933104openalex-snapshot
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
inferredcites →https://doi.org/10.1101/gr.2450504openalex-snapshot
Indel-Based Evolutionary Distance and Mouse–Human Divergence
inferredcites →https://doi.org/10.1101/gr.926603openalex-snapshot
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
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A new look at the statistical model identification
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PERSPECTIVE: GENE DIVERGENCE, POPULATION DIVERGENCE, AND THE VARIANCE IN COALESCENCE TIME IN PHYLOGEOGRAPHIC STUDIES
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THE SHAPES OF NEUTRAL GENE GENEALOGIES IN TWO SPECIES: PROBABILITIES OF MONOPHYLY, PARAPHYLY, AND POLYPHYLY IN A COALESCENT MODEL
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GENETIC DIFFERENTIATION WITHIN THEMELANOGASTERSPECIES GROUP OF THE GENUSDROSOPHILA(SOPHOPHORA)
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb00420.xopenalex-snapshot
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
inferredcites →https://doi.org/10.1111/j.1601-5223.2000.00081.xopenalex-snapshot
Brief Report a Phylogeny of the Drosophilidae Using the Sex-Behaviour GeneFruitless
inferredcites →https://doi.org/10.1126/science.1086432openalex-snapshot
The Dog Genome: Survey Sequencing and Comparative Analysis
inferredcites →https://doi.org/10.1126/science.1086558openalex-snapshot
Comment on "Hexapod Origins: Monophyletic or Paraphyletic?"
inferredcites →https://doi.org/10.1126/science.1115493openalex-snapshot
Phylogenetic MCMC Algorithms Are Misleading on Mixtures of Trees
inferredcites →https://doi.org/10.1126/science.1116759openalex-snapshot
Animal Evolution and the Molecular Signature of Radiations Compressed in Time
inferredcites →https://doi.org/10.1126/science.1122033openalex-snapshot
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals
inferredcites →https://doi.org/10.1126/science.1122440openalex-snapshot
Is the "Big Bang" in Animal Evolution Real?
inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150500openalex-snapshot
Estimating Divergence Times from Molecular Data on Phylogenetic and Population Genetic Timescales
inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150509openalex-snapshot
Troubleshooting Molecular Phylogenetic Analyses
inferredcites →https://doi.org/10.1146/annurev.ge.23.120189.002233openalex-snapshot
POPULATION GENETICS AND EVOLUTION OF SPECIES RELATED TO DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1214/ss/1063994980openalex-snapshot
Applying the Bootstrap in Phylogeny Reconstruction
inferredcites →https://doi.org/10.1266/ggs.74.117openalex-snapshot
Paleo-demography of the Drosophila melanogaster subgroup. Application of the maximum likelihood method.
inferredcites →https://doi.org/10.1371/journal.pgen.0020064openalex-snapshot
Balancing Selection and Its Effects on Sequences in Nearby Genome Regions
inferredcites →https://doi.org/10.1534/genetics.103.024182openalex-snapshot
Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis
inferredcites →https://doi.org/10.1534/genetics.104.029231openalex-snapshot
Inferring the Mode of Speciation From Genomic Data
inferredcites →https://doi.org/10.1534/genetics.104.029488openalex-snapshot
The Probability and Chromosomal Extent of trans-specific Polymorphism
inferredcites →https://doi.org/10.1534/genetics.104.033456openalex-snapshot
DNA Sequence Polymorphism and Divergence at the erect wing and suppressor of sable Loci of Drosophila melanogaster and D. simulans
inferredcites →https://doi.org/10.1534/genetics.105.048223openalex-snapshot
Approximate Bayesian Inference Reveals Evidence for a Recent, Severe Bottleneck in a Netherlands Population of Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.105.049593openalex-snapshot
The Concordance of Gene Trees and Species Trees at Two Linked Loci
inferredcites →https://doi.org/10.1534/genetics.105.049676openalex-snapshot
Molecular Evolution in the Drosophila melanogaster Species Subgroup: Frequent Parameter Fluctuations on the Timescale of Molecular Divergence
inferredcites →https://doi.org/10.1534/genetics.166.4.1783openalex-snapshot
Nucleotide Variation and Recombination Along the Fourth Chromosome in Drosophila simulans
inferredcites →https://doi.org/10.1554/04-385openalex-snapshot
GENE TREE DISTRIBUTIONS UNDER THE COALESCENT PROCESS
inferredcites →https://doi.org/10.2307/2992540openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
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Progress and Prospects in Evolutionary Biology. The Drosophila Model.
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inferred← citeshttps://doi.org/10.1007/s11434-016-1104-0openalex-snapshot
Diversification of Sisorid catfishes (Teleostei: Siluriformes) in relation to the orogeny of the Himalayan Plateau
inferred← citeshttps://doi.org/10.1007/s11538-010-9610-8openalex-snapshot
Parametric Analysis of Alignment and Phylogenetic Uncertainty
inferred← citeshttps://doi.org/10.1007/s11538-018-0485-4openalex-snapshot
Identifying Species Network Features from Gene Tree Quartets Under the Coalescent Model
inferred← citeshttps://doi.org/10.1007/s13199-013-0257-8openalex-snapshot
Primary symbiont of the ancient scale insect family Coelostomidiidae exhibits strict cophylogenetic patterns
inferred← citeshttps://doi.org/10.1016/b978-0-323-99886-4.00013-2openalex-snapshot
Microbial evolutionary reconstruction in the presence of mosaic sequences
inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00146-4openalex-snapshot
Phylogenetic Invariants
inferred← citeshttps://doi.org/10.1016/j.cell.2022.03.034openalex-snapshot
Incomplete lineage sorting and phenotypic evolution in marsupials
inferred← citeshttps://doi.org/10.1016/j.cois.2016.09.007openalex-snapshot
The rapidly changing landscape of insect phylogenetics
inferred← citeshttps://doi.org/10.1016/j.cortex.2018.09.016openalex-snapshot
Evolutionary divergence of neuroanatomical organization and related genes in chimpanzees and bonobos
inferred← citeshttps://doi.org/10.1016/j.gecco.2024.e03111openalex-snapshot
Evolution of the CYP2B subfamily gene in primates and its relationship to diet
inferred← citeshttps://doi.org/10.1016/j.gene.2009.05.006openalex-snapshot
Patterns of autosomal divergence between the human and chimpanzee genomes support an allopatric model of speciation
inferred← citeshttps://doi.org/10.1016/j.gene.2011.01.013openalex-snapshot
Gene tree discordance of wild and cultivated Asian rice deciphered by genome-wide sequence comparison
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2019.07.184openalex-snapshot
The conserved mitochondrial genomes of Drosophila mercatorum (Diptera: Drosophilidae) with different reproductive modes and phylogenetic implications
inferred← citeshttps://doi.org/10.1016/j.ijppaw.2019.09.005openalex-snapshot
Ecological and geographical speciation in Lucilia bufonivora: The evolution of amphibian obligate parasitism
inferred← citeshttps://doi.org/10.1016/j.jtbi.2013.01.009openalex-snapshot
Identifying a species tree subject to random lateral gene transfer
inferred← citeshttps://doi.org/10.1016/j.jtbi.2016.07.042openalex-snapshot
Reversible polymorphism-aware phylogenetic models and their application to tree inference
inferred← citeshttps://doi.org/10.1016/j.palaeo.2025.113459openalex-snapshot
Late Miocene climate change and orogenies jointly shaped the diversity patterns and evolution of a Neotropical cycad
inferred← citeshttps://doi.org/10.1016/j.pld.2019.05.003openalex-snapshot
Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae)
inferred← citeshttps://doi.org/10.1016/j.tig.2007.08.009openalex-snapshot
Approaches for identifying targets of positive selection
inferred← citeshttps://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferred← citeshttps://doi.org/10.1016/j.tree.2025.10.009openalex-snapshot
Phenotypic signatures of incomplete lineage sorting in hominids
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.06.007openalex-snapshot
Potential gene flow in natural populations of the Drosophila ananassae species cluster inferred from a nuclear mitochondrial pseudogene
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.02.011openalex-snapshot
Reticulate evolution and incomplete lineage sorting among the ponderosa pines
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.05.033openalex-snapshot
Coalescent methods for estimating phylogenetic trees
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.10.035openalex-snapshot
Delimiting species boundaries within the Neotropical bamboo Otatea (Poaceae: Bambusoideae) using molecular, morphological and ecological data
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.12.007openalex-snapshot
Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.01.002openalex-snapshot
Assigning sequences to species in the absence of large interspecific differences
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.12.015openalex-snapshot
Phylogenetic relationships in the spoon tarsus subgroup of Hawaiian drosophila: Conflict and concordance between gene trees
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.02.029openalex-snapshot
Random roots and lineage sorting
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.01.016openalex-snapshot
An assessment of haplotype variation in ribosomal and mitochondrial DNA fragments suggests incomplete lineage sorting in some species of the Paramecium aurelia complex (Ciliophora, Protozoa)
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.08.013openalex-snapshot
Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.01.011openalex-snapshot
Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.03.022openalex-snapshot
Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.07.019openalex-snapshot
A hairy case: The evolution of filtering carnivorous Drusinae (Limnephilidae, Trichoptera)
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.09.023openalex-snapshot
Expected pairwise congruence among gene trees under the coalescent model
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.06.012openalex-snapshot
Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: The fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.12.032openalex-snapshot
Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.01.003openalex-snapshot
Phylogeny and species delimitation of near Eastern Neurergus newts (Salamandridae) based on genome-wide RADseq data analysis
inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106737openalex-snapshot
Phylogeny and highland adaptation of Chinese species in Allium section Daghestanica (Amaryllidaceae) revealed by transcriptome sequencing
inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106756openalex-snapshot
Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107213openalex-snapshot
Molecular Phylogeny of Cryptonanus (Didelphidae: Thylamyini): Evidence for a recent and complex diversification in South American open biomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107507openalex-snapshot
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107593openalex-snapshot
The contribution of incomplete lineage sorting and introgression to the evolutionary history of the fast-evolving genus Ctenomys (Rodentia, Ctenomyidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107802openalex-snapshot
Mitochondrial introgression and mito-nuclear discordance obscured the closely related species boundaries in Cletus Stål from China (Heteroptera: Coreidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107806openalex-snapshot
Multiple outgroups can cause random rooting in phylogenomics
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108448openalex-snapshot
Hidden diversity in the driest desert on Earth: genomics unveils cryptic diversity in an ancient South American gecko lineage (Phyllodactylidae, Garthia)
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108454openalex-snapshot
Widespread incongruence in the phylogenomics of the ancient land plant lineage, Selaginellaceae (lycophytes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108591openalex-snapshot
The species delimitation challenge resulting from mito-nuclear discordance: A case of Macroscytus burrower bugs from China (Hemiptera: Heteroptera: Cydnidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108629openalex-snapshot
Genomic footprints of ancient multi‐species introgression events among allopatric cave-adapted Triplophysa species
inferred← citeshttps://doi.org/10.1017/s0024282913000297openalex-snapshot
Genetic diversity and species delimitation of the zeorin-containing red-fruited Cladonia species (lichenized Ascomycota) assessed with ITS rDNA and β-tubulin data
inferred← citeshttps://doi.org/10.1038/hdy.2011.68openalex-snapshot
Next-generation hybridization and introgression
inferred← citeshttps://doi.org/10.1038/nature06341openalex-snapshot
Evolution of genes and genomes on the Drosophila phylogeny
inferred← citeshttps://doi.org/10.1038/ncomms12637openalex-snapshot
Refuting the hypothesis that the acquisition of germ plasm accelerates animal evolution
inferred← citeshttps://doi.org/10.1038/s41437-022-00571-9openalex-snapshot
Testing assertions of widespread introgressive hybridization in a clade of neotropical toads with low mate selectivity (Rhinella granulosa species group)
inferred← citeshttps://doi.org/10.1038/s41467-021-23665-0openalex-snapshot
Whole-genome microsynteny-based phylogeny of angiosperms
inferred← citeshttps://doi.org/10.1038/s41598-017-01835-9openalex-snapshot
Transcriptome sequencing and phylogenetic analysis of four species of luminescent beetles
inferred← citeshttps://doi.org/10.1038/s41598-018-26619-7openalex-snapshot
The evolution of genomic and epigenomic features in two Pleurotus fungi
inferred← citeshttps://doi.org/10.1071/is11037openalex-snapshot
Cryptic species within the wheat curl mite Aceria tosichella (Keifer) (Acari : Eriophyoidea), revealed by mitochondrial, nuclear and morphometric data
inferred← citeshttps://doi.org/10.1073/pnas.0901397106openalex-snapshot
Natural selection in action during speciation
inferred← citeshttps://doi.org/10.1073/pnas.1421951112openalex-snapshot
Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster
inferred← citeshttps://doi.org/10.1073/pnas.1811268115openalex-snapshot
Quantifying the risk of hemiplasy in phylogenetic inference
inferred← citeshttps://doi.org/10.1073/pnas.1822129116openalex-snapshot
The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation
inferred← citeshttps://doi.org/10.1073/pnas.2220389120openalex-snapshot
Phylogenomic comparative methods: Accurate evolutionary inferences in the presence of gene tree discordance
inferred← citeshttps://doi.org/10.1073/pnas.2614706123openalex-snapshot
Phylogenomics confirms Palaeoptera monophyly and illuminates the origin of winged insects
inferred← citeshttps://doi.org/10.1080/10635150801910436openalex-snapshot
Testing Congruence in Phylogenomic Analysis
inferred← citeshttps://doi.org/10.1080/10635150802306527openalex-snapshot
Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies
inferred← citeshttps://doi.org/10.1080/10635150802422290openalex-snapshot
Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data
inferred← citeshttps://doi.org/10.1086/654847openalex-snapshot
Isolating Nuclear Genes and Identifying Lineages withoutMonophyly: An Example of Closely Related Species from Southern Madagascar
inferred← citeshttps://doi.org/10.1089/cmb.2008.0092openalex-snapshot
Reconciliation with Non-Binary Species Trees
inferred← citeshttps://doi.org/10.1089/cmb.2011.0174openalex-snapshot
Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles
inferred← citeshttps://doi.org/10.1093/aob/mcaf170openalex-snapshot
Mesopolyploidy as a taxonomic clade marker for Brassica and relatives (tribe Brassiceae)
inferred← citeshttps://doi.org/10.1093/aob/mcy104openalex-snapshot
Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia
inferred← citeshttps://doi.org/10.1093/bib/bbr036openalex-snapshot
Ortholog identification in the presence of domain architecture rearrangement
inferred← citeshttps://doi.org/10.1093/bib/bbu015openalex-snapshot
Causes, consequences and solutions of phylogenetic incongruence
inferred← citeshttps://doi.org/10.1093/bioinformatics/btm299openalex-snapshot
Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models
inferred← citeshttps://doi.org/10.1093/bioinformatics/btr592openalex-snapshot
Determining the evolutionary history of gene families
inferred← citeshttps://doi.org/10.1093/bioinformatics/bts386openalex-snapshot
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz211openalex-snapshot
ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization
inferred← citeshttps://doi.org/10.1093/biolinnean/blx017openalex-snapshot
Genomics of introgression in the Chinese horseshoe bat (Rhinolophus sinicus) revealed by transcriptome sequencing
inferred← citeshttps://doi.org/10.1093/evlett/qrae057openalex-snapshot
Genetic structure and common ancestry expose the dingo-dog hybrid myth
inferred← citeshttps://doi.org/10.1093/evolinnean/kzag004openalex-snapshot
Estimating the rate of quantitative trait evolution in the presence of gene tree discordance by calculating likelihoods across trees
inferred← citeshttps://doi.org/10.1093/gbe/evab290openalex-snapshot
Nucleotide Usage Biases Distort Inferences of the Species Tree
inferred← citeshttps://doi.org/10.1093/gbe/evad070openalex-snapshot
Filtration of Gene Trees From 9,000 Exons, Introns, and UCEs Disentangles Conflicting Phylogenomic Relationships in Tree Frogs (Hylidae)
inferred← citeshttps://doi.org/10.1093/gbe/evaf225openalex-snapshot
Comparative Genomics of the Testacea Group of Drosophila Reveals Introgression and Variation in Chromosome Size and Structure
inferred← citeshttps://doi.org/10.1093/gbe/evag035openalex-snapshot
Assessing the Potential of Ancient Protein Sequences in the Study of Hominid Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evq008openalex-snapshot
Positive Selection Differs between Protein Secondary Structure Elements in Drosophila
inferred← citeshttps://doi.org/10.1093/gbe/evr013openalex-snapshot
Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction
inferred← citeshttps://doi.org/10.1093/gbe/evr080openalex-snapshot
Genome-Wide Heterogeneity of Nucleotide Substitution Model Fit
inferred← citeshttps://doi.org/10.1093/gbe/evu083openalex-snapshot
The Molecular Evolution of Cytochrome P450 Genes within and between Drosophila Species
inferred← citeshttps://doi.org/10.1093/gbe/evu130openalex-snapshot
Family Size Evolution in Drosophila Chemosensory Gene Families: A Comparative Analysis with a Critical Appraisal of Methods
inferred← citeshttps://doi.org/10.1093/gbe/evy227openalex-snapshot
Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana)
inferred← citeshttps://doi.org/10.1093/gbe/evz121openalex-snapshot
Mitochondrial Architecture Rearrangements Produce Asymmetrical Nonadaptive Mutational Pressures That Subvert the Phylogenetic Reconstruction in Isopoda
inferred← citeshttps://doi.org/10.1093/genetics/iyab173openalex-snapshot
Phylogenomic approaches to detecting and characterizing introgression
inferred← citeshttps://doi.org/10.1093/jhered/esp043openalex-snapshot
Evolution of the GST Omega Gene Family in 12 Drosophila Species
inferred← citeshttps://doi.org/10.1093/jmammal/gyy073openalex-snapshot
Monotypic status of the South American relictual marsupial Dromiciops gliroides (Microbiotheria)
inferred← citeshttps://doi.org/10.1093/molbev/msab063openalex-snapshot
Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
inferred← citeshttps://doi.org/10.1093/molbev/msab311openalex-snapshot
Population Genomics of Wall Lizards Reflects the Dynamic History of the Mediterranean Basin
inferred← citeshttps://doi.org/10.1093/molbev/msaf032openalex-snapshot
A Tale of Too Many Trees: A Conundrum for Phylogenetic Regression
inferred← citeshttps://doi.org/10.1093/molbev/msaf269openalex-snapshot
Timing and Pattern of Early Diversification in Drosophilidae (Diptera)
inferred← citeshttps://doi.org/10.1093/molbev/msm235openalex-snapshot
Intron Loss and Gain in Drosophila
inferred← citeshttps://doi.org/10.1093/molbev/msm270openalex-snapshot
Evidence for Positive Selection on Drosophila melanogaster Seminal Fluid Protease Homologs
inferred← citeshttps://doi.org/10.1093/molbev/msn024openalex-snapshot
Divergence Times in Caenorhabditis and Drosophila Inferred from Direct Estimates of the Neutral Mutation Rate
inferred← citeshttps://doi.org/10.1093/molbev/msn112openalex-snapshot
Overdispersion of the Molecular Clock: Temporal Variation of Gene-Specific Substitution Rates in Drosophila
inferred← citeshttps://doi.org/10.1093/molbev/msn143openalex-snapshot
Frequent and Widespread Parallel Evolution of Protein Sequences
inferred← citeshttps://doi.org/10.1093/molbev/msn172openalex-snapshot
Subdivision in an Ancestral Species Creates Asymmetry in Gene Trees
inferred← citeshttps://doi.org/10.1093/molbev/msn213openalex-snapshot
The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees
inferred← citeshttps://doi.org/10.1093/molbev/msp071openalex-snapshot
Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila
inferred← citeshttps://doi.org/10.1093/molbev/msp088openalex-snapshot
Positive Selection Has Driven the Evolution of the Drosophila Insulin-Like Receptor (InR) at Different Timescales
inferred← citeshttps://doi.org/10.1093/molbev/msq165openalex-snapshot
Different Phylogenomic Approaches to Resolve the Evolutionary Relationships among Model Fish Species
inferred← citeshttps://doi.org/10.1093/molbev/msq353openalex-snapshot
Molecular Evolution of the Ligands of the Insulin-Signaling Pathway: dilp Genes in the Genus Drosophila
inferred← citeshttps://doi.org/10.1093/molbev/msr259openalex-snapshot
SPIn: Model Selection for Phylogenetic Mixtures via Linear Invariants
inferred← citeshttps://doi.org/10.1093/molbev/mss150openalex-snapshot
Estimating Divergence Dates and Substitution Rates in the Drosophila Phylogeny
inferred← citeshttps://doi.org/10.1093/molbev/mss210openalex-snapshot
Inferring the Evolutionary History of IncP-1 Plasmids Despite Incongruence among Backbone Gene Trees
inferred← citeshttps://doi.org/10.1093/molbev/mss266openalex-snapshot
Estimating Empirical Codon Hidden Markov Models
inferred← citeshttps://doi.org/10.1093/molbev/mst116openalex-snapshot
Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
inferred← citeshttps://doi.org/10.1093/molbev/mst131openalex-snapshot
Linking Great Apes Genome Evolution across Time Scales Using Polymorphism-Aware Phylogenetic Models
inferred← citeshttps://doi.org/10.1093/molbev/msu203openalex-snapshot
Positive and Purifying Selection on the Drosophila Y Chromosome
inferred← citeshttps://doi.org/10.1093/molbev/msu325openalex-snapshot
Phylogeny of Zebrafish, a “Model Species,” within Danio, a “Model Genus”
inferred← citeshttps://doi.org/10.1093/molbev/msu331openalex-snapshot
Coalescent Methods Are Robust to the Simultaneous Effects of Long Branches and Incomplete Lineage Sorting
inferred← citeshttps://doi.org/10.1093/molbev/msw197openalex-snapshot
Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time
inferred← citeshttps://doi.org/10.1093/molbev/msx049openalex-snapshot
The rice paradox: Multiple origins but single domestication in Asian rice
inferred← citeshttps://doi.org/10.1093/sysbio/syaa034openalex-snapshot
Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life
inferred← citeshttps://doi.org/10.1093/sysbio/syaa041openalex-snapshot
The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous–Paleogene (K–Pg) Mass Extinction Event
inferred← citeshttps://doi.org/10.1093/sysbio/syab056openalex-snapshot
Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs
inferred← citeshttps://doi.org/10.1093/sysbio/syac017openalex-snapshot
Origin and Diversification of the Saguaro Cactus (Carnegiea gigantea): A Within-Species Phylogenomic Analysis
inferred← citeshttps://doi.org/10.1093/sysbio/syae036openalex-snapshot
Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies
inferred← citeshttps://doi.org/10.1093/sysbio/syae054openalex-snapshot
Inference of Phylogenetic Networks From Sequence Data Using Composite Likelihood
inferred← citeshttps://doi.org/10.1093/sysbio/syp005openalex-snapshot
Conflicting Mitochondrial and Nuclear Phylogenies for the Widely Disjunct Emys (Testudines: Emydidae) Species Complex, and What They Tell Us about Biogeography and Hybridization
inferred← citeshttps://doi.org/10.1093/sysbio/syp008openalex-snapshot
Properties of Consensus Methods for Inferring Species Trees from Gene Trees
inferred← citeshttps://doi.org/10.1093/sysbio/syp045openalex-snapshot
Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design
inferred← citeshttps://doi.org/10.1093/sysbio/syp054openalex-snapshot
Species Trees from Highly Incongruent Gene Trees in Rice
inferred← citeshttps://doi.org/10.1093/sysbio/syq084openalex-snapshot
Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting
inferred← citeshttps://doi.org/10.1093/sysbio/syr089openalex-snapshot
Phylogenomic Analysis Resolves the Interordinal Relationships and Rapid Diversification of the Laurasiatherian Mammals
inferred← citeshttps://doi.org/10.1093/sysbio/syr101openalex-snapshot
A Species Tree for the Australo-Papuan Fairy-wrens and Allies (Aves: Maluridae)
inferred← citeshttps://doi.org/10.1093/sysbio/sys115openalex-snapshot
The Tree of Life: Metaphor, Model, and Heuristic Device
inferred← citeshttps://doi.org/10.1093/sysbio/syt037openalex-snapshot
Parsimonious Inference of Hybridization in the Presence of Incomplete Lineage Sorting
inferred← citeshttps://doi.org/10.1093/sysbio/syu027openalex-snapshot
Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3
inferred← citeshttps://doi.org/10.1093/sysbio/syu048openalex-snapshot
The Inference of Gene Trees with Species Trees
inferred← citeshttps://doi.org/10.1093/sysbio/syw018openalex-snapshot
Gene Tree Discordance Causes Apparent Substitution Rate Variation
inferred← citeshttps://doi.org/10.1093/sysbio/syw083openalex-snapshot
Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms
inferred← citeshttps://doi.org/10.1093/sysbio/syw104openalex-snapshot
Homology-aware Phylogenomics at Gigabase Scales
inferred← citeshttps://doi.org/10.1093/sysbio/syx035openalex-snapshot
Using Genomic Location and Coalescent Simulation to Investigate Gene Tree Discordance in Medicago L.
inferred← citeshttps://doi.org/10.1093/sysbio/syx063openalex-snapshot
Why Concatenation Fails Near the Anomaly Zone
inferred← citeshttps://doi.org/10.1093/sysbio/syx076openalex-snapshot
Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families
inferred← citeshttps://doi.org/10.1093/sysbio/syy013openalex-snapshot
Variation Across Mitochondrial Gene Trees Provides Evidence for Systematic Error: How Much Gene Tree Variation Is Biological?
inferred← citeshttps://doi.org/10.1093/sysbio/syy074openalex-snapshot
Phylogenomic Signatures of Ancient Introgression in a Rogue Lineage of Darters (Teleostei: Percidae)
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlx095openalex-snapshot
Systematics of the genus Oecomys (Sigmodontinae: Oryzomyini): molecular phylogenetic, cytogenetic and morphological approaches reveal cryptic species
inferred← citeshttps://doi.org/10.1098/rstb.2018.0244openalex-snapshot
The perils of intralocus recombination for inferences of molecular convergence
inferred← citeshttps://doi.org/10.1101/005736openalex-snapshot
Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm
inferred← citeshttps://doi.org/10.1101/2020.07.30.228965openalex-snapshot
Nucleotide usage biases distort inferences of the species tree
inferred← citeshttps://doi.org/10.1101/2021.09.07.459237openalex-snapshot
The impact of fast radiation on the phylogeny of Bactrocera fruit flies
inferred← citeshttps://doi.org/10.1101/2022.06.15.496264openalex-snapshot
A Novel Bacterial Speciation Process Observed in a Symbiotic Marine Population
inferred← citeshttps://doi.org/10.1101/276642openalex-snapshot
Evolutionary inferences about quantitative traits are affected by underlying genealogical discordance
inferred← citeshttps://doi.org/10.1101/498378openalex-snapshot
Species Tree Inference on Data with Paralogs is Accurate Using Methods Intended to Deal with Incomplete Lineage Sorting
inferred← citeshttps://doi.org/10.1101/668475openalex-snapshot
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds
inferred← citeshttps://doi.org/10.1101/gr.084038.108openalex-snapshot
Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12Drosophilagenomes
inferred← citeshttps://doi.org/10.1101/gr.084228.108openalex-snapshot
Phylogenomics of primates and their ancestral populations
inferred← citeshttps://doi.org/10.1101/gr.114751.110openalex-snapshot
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
inferred← citeshttps://doi.org/10.1101/gr.115949.110openalex-snapshot
High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
inferred← citeshttps://doi.org/10.1101/gr.123901.111openalex-snapshot
Unified modeling of gene duplication, loss, and coalescence using a locus tree
inferred← citeshttps://doi.org/10.1101/gr.125864.111openalex-snapshot
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
inferred← citeshttps://doi.org/10.1101/gr.6249707openalex-snapshot
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
inferred← citeshttps://doi.org/10.1101/gr.6409707openalex-snapshot
A new approach to estimate parameters of speciation models with application to apes
inferred← citeshttps://doi.org/10.1101/gr.7105007openalex-snapshot
Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
inferred← citeshttps://doi.org/10.1101/gr.7265208openalex-snapshot
Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs
inferred← citeshttps://doi.org/10.1109/tcbb.2013.144openalex-snapshot
Maximizing Deep Coalescence Cost
inferred← citeshttps://doi.org/10.1109/tcbb.2013.2297913openalex-snapshot
Effect of Incomplete Lineage Sorting On Tree-Reconciliation-Based Inference of Gene Duplication
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