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Identifying the genetic basis of variation in cell behaviour in human iPS cell lines from healthy donors

https://doi.org/10.1101/285627
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ESCs and iPSCs during Reprogramming and Time in Culture
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Genetic Variability Overrides the Impact of Parental Cell Type and Determines iPSC Differentiation Potential
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iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types
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The promise of induced pluripotent stem cells in research and therapy
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A global reference for human genetic variation
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A method to recapitulate early embryonic spatial patterning in human embryonic stem cells
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Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
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Genome-wide association studies for complex traits: consensus, uncertainty and challenges
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Announcing the worldwide Protein Data Bank
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Suppression of KCMF1 by constitutive high CD99 expression is involved in the migratory ability of Ewing's sarcoma cells
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Scalable topographies to support proliferation and Oct4 expression by human induced pluripotent stem cells
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A tumor-associated β1 integrin mutation that abrogates epithelial differentiation control
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Variance stabilization applied to microarray data calibration and to the quantification of differential expression
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
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ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
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HMMER web server: interactive sequence similarity searching
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DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach
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PANTHER version 10: expanded protein families and functions, and analysis tools
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The Pfam protein families database: towards a more sustainable future
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UniProt: the universal protein knowledgebase
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Signaling for germ cells
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Statistical potential for assessment and prediction of protein structures
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Endophenotypes in the Genetic Analyses of Mental Disorders
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An Activating β1 Integrin Mutation Increases the Conversion of Benign to Malignant Skin Tumors
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The ADAMTS (A Disintegrin and Metalloproteinase with Thrombospondin motifs) family
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Genetic Background Drives Transcriptional Variation in Human Induced Pluripotent Stem Cells
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Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs
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International Society for Stem Cell Research
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