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Revisiting the phylogeny of Ficus (Moraceae): When Next Generation Sequencing corroborates Past Generation Botanists

https://doi.org/10.1101/340463
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-61779-228-1_9openalex-snapshot
SNP Discovery and Genotyping for Evolutionary Genetics Using RAD Sequencing
inferredcites →https://doi.org/10.1007/bf00937196openalex-snapshot
Nuclear DNA contents in the genusFicus (Moraceae)
inferredcites →https://doi.org/10.1007/bf01975677openalex-snapshot
Classification and distribution ofFicus
inferredcites →https://doi.org/10.1007/s00442-002-1116-0openalex-snapshot
Why do fig wasps actively pollinate monoecious figs?
inferredcites →https://doi.org/10.1016/0160-9327(77)90106-5openalex-snapshot
Fig biology
inferredcites →https://doi.org/10.1016/j.ympev.2016.12.031openalex-snapshot
First plastid phylogenomic study reveals potential cyto-nuclear discordance in the evolutionary history of Ficus L. (Moraceae)
inferredcites →https://doi.org/10.1017/s1464793101005760openalex-snapshot
Fig‐eating by vertebrate frugivores: a global review
inferredcites →https://doi.org/10.1080/10635150390192780openalex-snapshot
Stochastic Mapping of Morphological Characters
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btw352openalex-snapshot
RADIS:analysis ofRAD-seq data for interspecific phylogeny
inferredcites →https://doi.org/10.1093/molbev/msn043openalex-snapshot
Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
inferredcites →https://doi.org/10.1093/molbev/msu063openalex-snapshot
Empirical Assessment of RAD Sequencing for Interspecific Phylogeny
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/sys068openalex-snapshot
An Extreme Case of Plant–Insect Codiversification: Figs and Fig-Pollinating Wasps
inferredcites →https://doi.org/10.1093/sysbio/syt032openalex-snapshot
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1098/rspb.2001.1633openalex-snapshot
Pollination mode in fig wasps: the predictive power of correlated traits
inferredcites →https://doi.org/10.1098/rspb.2005.3249openalex-snapshot
60 million years of co-divergence in the fig–wasp symbiosis
inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00059.xopenalex-snapshot
A review of long‐branch attraction
inferredcites →https://doi.org/10.1111/j.1096-0031.2007.00173.xopenalex-snapshot
Phylogenetic placement of the Tasmanian spider Acrobleps hygrophilus (Araneae, Anapidae) with comments on the evolution of the capture web in Araneoidea
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferredcites →https://doi.org/10.1111/j.1365-2699.1996.tb00014.xopenalex-snapshot
Molecular phylogenies of figs and their pollinator wasps
inferredcites →https://doi.org/10.1111/j.1759-6831.2011.00155.xopenalex-snapshot
New insight into the phylogenetic and biogeographic history of genus Ficus: Vicariance played a relatively minor role compared with ecological opportunity and dispersal
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot
Stacks: an analysis tool set for population genomics
inferredcites →https://doi.org/10.1111/nph.12956openalex-snapshot
Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, P opulus balsamifera and P . trichocarpa ( S alicaceae)
inferredcites →https://doi.org/10.1186/1471-2105-11-7openalex-snapshot
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
inferredcites →https://doi.org/10.1186/1471-2105-7-88openalex-snapshot
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1371/journal.pone.0102272openalex-snapshot
Correction: A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data
inferredcites →https://doi.org/10.1554/02-445openalex-snapshot
CONVERGENCE AND COEVOLUTION IN A MUTUALISM: EVIDENCE FROM A MOLECULAR PHYLOGENY OF FICUS
inferredcites →https://doi.org/10.2307/2656726openalex-snapshot
Phylogenetic relationships of functionally dioecious FICUS (Moraceae) based on ribosomal DNA sequences and morphology
inferredcites →https://doi.org/10.3732/ajb.91.5.767openalex-snapshot
On the origin of the fig: phylogenetic relationships of Moraceae from ndhF sequences
inferredcites →https://doi.org/10.7717/peerj.1660openalex-snapshot
AMAS: a fast tool for alignment manipulation and computing of summary statistics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2025.09.01.673595openalex-snapshot
Ancient bridges, modern threat: Conserving landscape heterogeneity ensures sustenance of living root-bridges in Meghalaya
inferred← citeshttps://doi.org/10.1111/cla.12443openalex-snapshot
Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae)
inferred← citeshttps://doi.org/10.1186/s12870-023-04324-6openalex-snapshot
East‒West genetic differentiation across the Indo-Burma hotspot: evidence from two closely related dioecious figs
inferred← citeshttps://doi.org/10.70675/38bac37bz8736z4009z995bz26579e2e8f89openalex-snapshot
Phylogeny, biogeography, and breeding system evolution in Moraceae
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