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Childhood Cerebellar Tumors Mirror Conserved Fetal Transcriptional Programs

https://doi.org/10.1101/350280
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00401-011-0922-zopenalex-snapshot
Molecular subgroups of medulloblastoma: the current consensus
inferredcites →https://doi.org/10.1007/s00401-016-1643-0openalex-snapshot
The current consensus on the clinical management of intracranial ependymoma and its distinct molecular variants
inferredcites →https://doi.org/10.1007/s12311-012-0380-8openalex-snapshot
Electrophysiological, Morphological, and Topological Properties of Two Histochemically Distinct Subpopulations of Cerebellar Unipolar Brush Cells
inferredcites →https://doi.org/10.1007/s12311-015-0724-2openalex-snapshot
Consensus Paper: Cerebellar Development
inferredcites →https://doi.org/10.1016/j.ccell.2015.04.002openalex-snapshot
Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups
inferredcites →https://doi.org/10.1016/j.ccell.2017.05.005openalex-snapshot
Intertumoral Heterogeneity within Medulloblastoma Subgroups
inferredcites →https://doi.org/10.1016/j.ccr.2005.09.001openalex-snapshot
Radial glia cells are candidate stem cells of ependymoma
inferredcites →https://doi.org/10.1016/j.ccr.2011.07.007openalex-snapshot
Delineation of Two Clinically and Molecularly Distinct Subgroups of Posterior Fossa Ependymoma
inferredcites →https://doi.org/10.1016/j.ccr.2011.12.021openalex-snapshot
An Animal Model of MYC-Driven Medulloblastoma
inferredcites →https://doi.org/10.1016/j.ccr.2011.12.023openalex-snapshot
A Mouse Model of the Most Aggressive Subgroup of Human Medulloblastoma
inferredcites →https://doi.org/10.1016/j.ccr.2014.05.005openalex-snapshot
Quiescent Sox2+ Cells Drive Hierarchical Growth and Relapse in Sonic Hedgehog Subgroup Medulloblastoma
inferredcites →https://doi.org/10.1016/j.cell.2018.01.038openalex-snapshot
A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases
inferredcites →https://doi.org/10.1016/j.cell.2018.05.033openalex-snapshot
A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases
inferredcites →https://doi.org/10.1016/j.devcel.2013.10.008openalex-snapshot
The Purkinje Neuron Acts as a Central Regulator of Spatially and Functionally Distinct Cerebellar Precursors
inferredcites →https://doi.org/10.1016/j.neuroscience.2017.04.020openalex-snapshot
Wls expression in the rhombic lip orchestrates the embryonic development of the mouse cerebellum
inferredcites →https://doi.org/10.1016/s0166-2236(98)01313-7openalex-snapshot
The cells and molecules that make a cerebellum
inferredcites →https://doi.org/10.1016/s0896-6273(00)80682-0openalex-snapshot
Control of Neuronal Precursor Proliferation in the Cerebellum by Sonic Hedgehog
inferredcites →https://doi.org/10.1016/s0960-9822(99)80195-xopenalex-snapshot
Purkinje-cell-derived Sonic hedgehog regulates granule neuron precursor cell proliferation in the developing mouse cerebellum
inferredcites →https://doi.org/10.1038/415436aopenalex-snapshot
Prediction of central nervous system embryonal tumour outcome based on gene expression
inferredcites →https://doi.org/10.1038/nature09173openalex-snapshot
Cross-species genomics matches driver mutations and cell compartments to model ependymoma
inferredcites →https://doi.org/10.1038/nature09587openalex-snapshot
Subtypes of medulloblastoma have distinct developmental origins
inferredcites →https://doi.org/10.1038/nature10825openalex-snapshot
Clonal selection drives genetic divergence of metastatic medulloblastoma
inferredcites →https://doi.org/10.1038/nature11284openalex-snapshot
Dissecting the genomic complexity underlying medulloblastoma
inferredcites →https://doi.org/10.1038/nature11327openalex-snapshot
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
inferredcites →https://doi.org/10.1038/nature11329openalex-snapshot
Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations
inferredcites →https://doi.org/10.1038/nature13108openalex-snapshot
Epigenomic alterations define lethal CIMP-positive ependymomas of infancy
inferredcites →https://doi.org/10.1038/nature16478openalex-snapshot
Divergent clonal selection dominates medulloblastoma at recurrence
inferredcites →https://doi.org/10.1038/nature22973openalex-snapshot
The whole-genome landscape of medulloblastoma subtypes
inferredcites →https://doi.org/10.1038/nature25169openalex-snapshot
Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling
inferredcites →https://doi.org/10.1038/nature26000openalex-snapshot
DNA methylation-based classification of central nervous system tumours
inferredcites →https://doi.org/10.1038/nbt.2859openalex-snapshot
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
inferredcites →https://doi.org/10.1038/nbt.3192openalex-snapshot
Spatial reconstruction of single-cell gene expression data
inferredcites →https://doi.org/10.1038/nbt.4096openalex-snapshot
Integrating single-cell transcriptomic data across different conditions, technologies, and species
inferredcites →https://doi.org/10.1038/ncomms14049openalex-snapshot
Massively parallel digital transcriptional profiling of single cells
inferredcites →https://doi.org/10.1038/ng.2682openalex-snapshot
Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma
inferredcites →https://doi.org/10.1038/ng.3838openalex-snapshot
Spatial heterogeneity in medulloblastoma
inferredcites →https://doi.org/10.1038/nmeth.3337openalex-snapshot
Robust enumeration of cell subsets from tissue expression profiles
inferredcites →https://doi.org/10.1038/nmeth.4402openalex-snapshot
Reversed graph embedding resolves complex single-cell trajectories
inferredcites →https://doi.org/10.1038/nn.3553openalex-snapshot
A population of Nestin-expressing progenitors in the cerebellum exhibits increased tumorigenicity
inferredcites →https://doi.org/10.1038/nn.4621openalex-snapshot
Cerebellar granule cell replenishment postinjury by adaptive reprogramming of Nestin+ progenitors
inferredcites →https://doi.org/10.1038/nprot.2006.228openalex-snapshot
Preparation of organotypic hippocampal slice cultures: interface method
inferredcites →https://doi.org/10.1038/nrc3410openalex-snapshot
Medulloblastomics: the end of the beginning
inferredcites →https://doi.org/10.1038/nrneurol.2012.78openalex-snapshot
The clinical implications of medulloblastoma subgroups
inferredcites →https://doi.org/10.1038/s41467-018-04334-1openalex-snapshot
Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity
inferredcites →https://doi.org/10.1073/pnas.1717815115openalex-snapshot
Lateral cerebellum is preferentially sensitive to high sonic hedgehog signaling and medulloblastoma formation
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/nar/gkx1098openalex-snapshot
Ensembl 2018
inferredcites →https://doi.org/10.1101/gad.1907510openalex-snapshot
Pleiotropic role for MYCN in medulloblastoma
inferredcites →https://doi.org/10.1146/annurev.cellbio.23.090506.123237openalex-snapshot
Morphology, Molecular Codes, and Circuitry Produce the Three-Dimensional Complexity of the Cerebellum
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-016-0947-7openalex-snapshot
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
inferredcites →https://doi.org/10.1200/jco.2009.27.4324openalex-snapshot
Medulloblastoma Comprises Four Distinct Molecular Variants
inferredcites →https://doi.org/10.1523/jneurosci.1330-14.2014openalex-snapshot
WlsProvides a New Compartmental View of the Rhombic Lip in Mouse Cerebellar Development
inferredcites →https://doi.org/10.1523/jneurosci.1860-14.2014openalex-snapshot
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
inferredcites →https://doi.org/10.1523/jneurosci.5255-14.2015openalex-snapshot
Heterogeneity and Bipotency of Astroglial-Like Cerebellar Progenitors along the Interneuron and Glial Lineages

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/wdev.342openalex-snapshot
Developmental origins and oncogenic pathways in malignant brain tumors
inferred← citeshttps://doi.org/10.1038/s41467-019-10307-9openalex-snapshot
Neuronal differentiation and cell-cycle programs mediate response to BET-bromodomain inhibition in MYC-driven medulloblastoma
inferred← citeshttps://doi.org/10.1038/s41586-022-05215-wopenalex-snapshot
Failure of human rhombic lip differentiation underlies medulloblastoma formation
inferred← citeshttps://doi.org/10.1038/s41598-019-50088-1openalex-snapshot
Upregulation of the chromatin remodeler HELLS is mediated by YAP1 in Sonic Hedgehog Medulloblastoma
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa189openalex-snapshot
Projected t-SNE for batch correction
inferred← citeshttps://doi.org/10.1093/nar/gkz543openalex-snapshot
CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing
inferred← citeshttps://doi.org/10.1093/neuonc/noag020openalex-snapshot
MIF-CD74 signaling drives immune modulation in medulloblastoma
inferred← citeshttps://doi.org/10.1101/517565openalex-snapshot
Tumor mutational landscape is a record of the pre-malignant state
inferred← citeshttps://doi.org/10.1126/sciadv.abl5838openalex-snapshot
Enhancing CDK4/6 inhibitor therapy for medulloblastoma using nanoparticle delivery and scRNA-seq–guided combination with sapanisertib
inferred← citeshttps://doi.org/10.3410/f.735902676.793563481openalex-snapshot
Faculty Opinions recommendation of Neuronal differentiation and cell-cycle programs mediate response to BET-bromodomain inhibition in MYC-driven medulloblastoma.
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