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Genome analysis of the unicellular eukaryote Euplotes vannus reveals molecular basis for sex determination and tolerance to environmental stresses
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1097-010x(19970101)277:1<38::aid-jez4>3.0.co;2-copenalex-snapshot
Pheromones of the ciliate Euplotes octocarinatus not only induce conjugation but also function as chemoattractants
inferredcites →https://doi.org/10.1002/0471250953.bi0410s25openalex-snapshot
Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
inferredcites →https://doi.org/10.1002/jez.1402370113openalex-snapshot
Mating types and mating inducing substances in Euplotes octocarinatus
inferredcites →https://doi.org/10.1002/pro.5560030917openalex-snapshot
The NMR solution structure of the pheromone Er‐2 from the ciliated protozoan Euplotes raikovi
inferredcites →https://doi.org/10.1002/pro.5560030918openalex-snapshot
The NMR solution structure of the pheromone Er‐1 from the ciliated protozoan Euplotes raikovi—NMR structure of the pheromone Er‐I
inferredcites →https://doi.org/10.1002/pro.5560030919openalex-snapshot
Structure comparison of the pheromones Er‐1, Er‐10, and Er‐2 from Euplotes raikovi
inferredcites →https://doi.org/10.1006/jmbi.1993.1327openalex-snapshot
Nuclear Magnetic Resonance Solution Structure of the Pheromone Er-10 from the Ciliated Protozoan Euplotes raikovi
inferredcites →https://doi.org/10.1006/jmbi.1999.2776openalex-snapshot
High-resolution solution structure of the 18 kDa substrate-binding domain of the mammalian chaperone protein Hsc70 1 1Edited by P. E. Wright
inferredcites →https://doi.org/10.1006/jmbi.2001.5099openalex-snapshot
NMR structure of the Euplotes raikovi pheromone E r -23 and identification of its five disulfide bonds 1 1Edited by M. F. Summers
inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1007/978-1-60761-987-1_18openalex-snapshot
Cytoscape: Software for Visualization and Analysis of Biological Networks
inferredcites →https://doi.org/10.1007/bf00006691openalex-snapshot
Predation risk of typical ovoid and ?winged? morphs of Euplotes (Protozoa, Ciliophora)
inferredcites →https://doi.org/10.1007/bf00018676openalex-snapshot
Effects of food availability on predator-induced morphological defence in the ciliate Euplotes octocarinatus (Protista)
inferredcites →https://doi.org/10.1007/bf00184515openalex-snapshot
Adaptation of inducible defense in Euplotes daidaleos (Ciliophora) to predation risks by various predators
inferredcites →https://doi.org/10.1007/bf00317505openalex-snapshot
Behavioural and morphological changes in ciliates induced by the predator Amoeba proteus
inferredcites →https://doi.org/10.1007/bf00566974openalex-snapshot
Induction of defensive morphological changes in ciliates
inferredcites →https://doi.org/10.1007/bf00894912openalex-snapshot
Experimentelle Untersuchungen anEuplotes crassus
inferredcites →https://doi.org/10.1007/s10531-007-9254-7openalex-snapshot
Diversity and geographic distribution of ciliates (Protista: Ciliophora)
inferredcites →https://doi.org/10.1007/s12601-017-0014-7openalex-snapshot
Adaptation responses of individuals to environmental changes in the ciliate Euplotes crassus
inferredcites →https://doi.org/10.1007/s13258-017-0611-yopenalex-snapshot
Transcriptional profiling of antioxidant defense system and heat shock protein (Hsp) families in the cadmium- and copper-exposed marine ciliate Euplotes crassu
inferredcites →https://doi.org/10.1016/b978-0-12-803252-7.00001-1openalex-snapshot
Ciliate Pheromones
inferredcites →https://doi.org/10.1016/j.algal.2017.08.024openalex-snapshot
Microzooplanktonic grazers – A potentially devastating threat to the commercial success of microalgal mass culture
inferredcites →https://doi.org/10.1016/j.aquatox.2007.05.002openalex-snapshot
Effects of xenobiotic compounds on the cell activities of Euplotes crassus, a single-cell eukaryotic test organism for the study of the pollution of marine sediments
inferredcites →https://doi.org/10.1016/j.cell.2016.06.020openalex-snapshot
Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
inferredcites →https://doi.org/10.1016/j.cub.2016.12.057openalex-snapshot
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell
inferredcites →https://doi.org/10.1016/j.ecolind.2017.10.041openalex-snapshot
Metabarcoding of benthic ciliate communities shows high potential for environmental monitoring in salmon aquaculture
inferredcites →https://doi.org/10.1016/j.ejop.2017.04.007openalex-snapshot
Diversity of free-living marine ciliates (Alveolata, Ciliophora): Faunal studies in coastal waters of China during the years 2011–2016
inferredcites →https://doi.org/10.1016/j.ejop.2017.05.002openalex-snapshot
Unusual features of non-dividing somatic macronuclei in the ciliate class Karyorelictea
inferredcites →https://doi.org/10.1016/j.ejop.2017.06.006openalex-snapshot
A comparative study of genome organization and epigenetic mechanisms in model ciliates, with an emphasis on Tetrahymena , Paramecium and Oxytricha
inferredcites →https://doi.org/10.1016/j.jip.2011.04.006openalex-snapshot
Analysis of expressed sequence tags (ESTs) and gene expression changes under different growth conditions for the ciliate Anophryoides haemophila, the causative agent of bumper car disease in the American lobster (Homarus americanus)
inferredcites →https://doi.org/10.1016/j.jmb.2007.06.046openalex-snapshot
Cold-adaptation in Sea-water-borne Signal Proteins: Sequence and NMR Structure of the Pheromone En-6 from the Antarctic Ciliate Euplotes nobilii
inferredcites →https://doi.org/10.1016/j.margen.2009.03.003openalex-snapshot
HSP70 heat shock proteins and environmental stress in Antarctic marine organisms: A mini-review
inferredcites →https://doi.org/10.1016/j.margen.2012.03.004openalex-snapshot
Coding genes and molecular structures of the diffusible signalling proteins (pheromones) of the polar ciliate, Euplotes nobilii
inferredcites →https://doi.org/10.1016/j.marpolbul.2010.11.008openalex-snapshot
An approach to analyzing spatial patterns of planktonic ciliate communities for monitoring water quality in Jiaozhou Bay, northern China
inferredcites →https://doi.org/10.1016/j.scitotenv.2013.10.025openalex-snapshot
Use of biofilm-dwelling ciliate communities to determine environmental quality status of coastal waters
inferredcites →https://doi.org/10.1016/j.ympev.2016.09.016openalex-snapshot
Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic
inferredcites →https://doi.org/10.1016/s0003-9365(11)80121-1openalex-snapshot
Escape Response of Euplotes octocarinatus to Turbellarian Predators
inferredcites →https://doi.org/10.1016/s0932-4739(11)80097-0openalex-snapshot
Philasterides dicentrarchi, n. sp., (ciliophora, scuticociliatida), a histophagous opportunistic parasite of Dicentrarchus labrax (Linnaeus, 1758), a reared marine fish
inferredcites →https://doi.org/10.1016/s0932-4739(98)80022-9openalex-snapshot
The pheromones and pheromone genes of new stocks of the Euplotes octocarinatus species complex
inferredcites →https://doi.org/10.1016/s0932-4739(99)80041-8openalex-snapshot
Characterization of two genes encoding a fifth so far unknown pheromone of Euplotes octocarinatus
inferredcites →https://doi.org/10.1016/s0969-2126(97)00197-4openalex-snapshot
Human Hsp70 molecular chaperone binds two calcium ions within the ATPase domain
inferredcites →https://doi.org/10.1017/s0016672300022618openalex-snapshot
Mating types and mating-inducing factors (gamones) in the ciliateEuplotes patellasyngen 2
inferredcites →https://doi.org/10.1017/s0954102004001774openalex-snapshot
The gene for the heat-shock protein 70 of Euplotes focardii, an Antarctic psychrophilic ciliate
inferredcites →https://doi.org/10.1017/s0954102007000314openalex-snapshot
Adaptive evolution of the heat-shock response in the Antarctic psychrophilic ciliate, Euplotes focardii: hints from a comparative determination of the hsp70 gene structure
inferredcites →https://doi.org/10.1023/a:1008332922256openalex-snapshot
Letter to the Editor: NMR structure of the pheromone Er-22 from Euplotes raikovi
inferredcites →https://doi.org/10.1023/b:hydr.0000026505.91684.abopenalex-snapshot
An investigation of the tolerance to ammonia of the marine ciliate Euplotes vannus (Protozoa, Ciliophora)
inferredcites →https://doi.org/10.1038/nature13318openalex-snapshot
Genome-defence small RNAs exapted for epigenetic mating-type inheritance
inferredcites →https://doi.org/10.1038/nbt.3122openalex-snapshot
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
inferredcites →https://doi.org/10.1038/nbt.3172openalex-snapshot
Ballgown bridges the gap between transcriptome assembly and expression analysis
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nsmb.3330openalex-snapshot
Position-dependent termination and widespread obligatory frameshifting in Euplotes translation
inferredcites →https://doi.org/10.1038/srep21139openalex-snapshot
High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus
inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01242.xopenalex-snapshot
Divergence between two Antarctic species of the ciliate Euplotes, E. focardii and E. nobilii, in the expression of heat‐shock protein 70 genes
inferredcites →https://doi.org/10.1073/pnas.1019432108openalex-snapshot
Antarctic and Arctic populations of the ciliate Euplotes nobilii show common pheromone-mediated cell-cell signaling and cross-mating
inferredcites →https://doi.org/10.1073/pnas.46.3.344openalex-snapshot
THE GENIC CONTROL OF MATING TYPES IN PARAMECIUM BURSARIA
inferredcites →https://doi.org/10.1073/pnas.92.22.10172openalex-snapshot
A cooperative model for receptor recognition and cell adhesion: evidence from the molecular packing in the 1.6-A crystal structure of the pheromone Er-1 from the ciliated protozoan Euplotes raikovi.
inferredcites →https://doi.org/10.1078/0932-4739-00021openalex-snapshot
Ciliates as a potential source of cellular and molecular biomarkers/biosensors for heavy metal pollution
inferredcites →https://doi.org/10.1080/15216540701258165openalex-snapshot
Cold‐adapted signal proteins: NMR structures of pheromones from the antarctic ciliate Euplotes nobilii
inferredcites →https://doi.org/10.1086/280899openalex-snapshot
Speciation as a Stage in Evolutionary Divergence
inferredcites →https://doi.org/10.1086/physzool.68.1.30163920openalex-snapshot
Intraspecific Variability in the Thermal Dependence of Locomotion, Population Growth, and Mating in the Ciliated Protist Euplotes vannus
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1089/cmb.2013.0084openalex-snapshot
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
inferredcites →https://doi.org/10.1093/bib/bbt001openalex-snapshot
Using GBrowse 2.0 to visualize and share next-generation sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/bti551openalex-snapshot
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/gbe/evu139openalex-snapshot
The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
inferredcites →https://doi.org/10.1093/genetics/27.3.269openalex-snapshot
THE NATURE AND INHERITANCE OF MATING TYPES IN EUPLOTES PATELLA
inferredcites →https://doi.org/10.1093/genetics/40.5.668openalex-snapshot
THE GENETIC CONTROL OF MATING TYPE POTENTIALITIES IN TETRAHYMENA PYRIFORMIS
inferredcites →https://doi.org/10.1093/molbev/msn067openalex-snapshot
An Improved General Amino Acid Replacement Matrix
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/molbev/msw166openalex-snapshot
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons inCondylostoma magnum
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/gkg500openalex-snapshot
Multiple sequence alignment with the Clustal series of programs
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gks1005openalex-snapshot
Rfam 11.0: 10 years of RNA families
inferredcites →https://doi.org/10.1093/nar/gkt283openalex-snapshot
DIALIGN at GOBICS—multiple sequence alignment using various sources of external information
inferredcites →https://doi.org/10.1093/nar/gkw684openalex-snapshot
Dissecting relative contributions ofcis- andtrans-determinants to nucleosome distribution by comparingTetrahymenamacronuclear and micronuclear chromatin
inferredcites →https://doi.org/10.1093/nar/gkx883openalex-snapshot
N6-adenine DNA methylation is associated with the linker DNA of H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena
inferredcites →https://doi.org/10.1098/rsif.2015.0342openalex-snapshot
Cell–cell signalling in sexual chemotaxis: a basis for gametic differentiation, mating types and sexes
inferredcites →https://doi.org/10.1098/rspb.2017.0425openalex-snapshot
Disentangling sources of variation in SSU rDNA sequences from single cell analyses of ciliates: impact of copy number variation and experimental error
inferredcites →https://doi.org/10.1098/rspb.2017.2159openalex-snapshot
Species delimitation for the molecular taxonomy and ecology of the widely distributed microbial eukaryote genus Euplotes (Alveolata, Ciliophora)
inferredcites →https://doi.org/10.1101/gr.849004openalex-snapshot
WebLogo: A Sequence Logo Generator: Figure 1
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1111/1755-0998.12750openalex-snapshot
GPS it: An automated method for evolutionary analysis of nonculturable ciliated microeukaryotes
inferredcites →https://doi.org/10.1111/j.0021-8790.2004.00830.xopenalex-snapshot
Temperature‐dependent interactions explain unexpected responses to environmental warming in communities of competitors
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Studies on the morphology of Uronema marinum Dujardin (Ciliatea: Uronematidae) with a description of the histopathology of the infection in marine fishes
inferredcites →https://doi.org/10.1111/j.1432-1033.1987.tb13391.xopenalex-snapshot
The isolation of gamones 3 and 4 of Euplotes octocarinatus
inferredcites →https://doi.org/10.1111/j.1550-7408.1980.tb04224.xopenalex-snapshot
Spatial Distribution of Marine Ciliates: Micro‐Ecologic and Biogeographic Aspects of Protozoan Ecology*†
inferredcites →https://doi.org/10.1111/j.1550-7408.1985.tb03024.xopenalex-snapshot
Mating‐Type Polymorphic Variation in Euplotes minuta (Ciliophora: Hypotrichida)1
inferredcites →https://doi.org/10.1111/j.1550-7408.1988.tb04073.xopenalex-snapshot
An Integrated Study of the Species Problem in the Euplotes crassus‐minuta‐vannus Group1
inferredcites →https://doi.org/10.1111/j.1550-7408.2011.00535.xopenalex-snapshot
Isolation and Structural Characterization of Two Water-Borne Pheromones from Euplotes crassus, a Ciliate Commonly Known to Carry Membrane-Bound Pheromones
inferredcites →https://doi.org/10.1111/j.1574-6941.2006.00259.xopenalex-snapshot
Ciliate biogeography in Antarctic and Arctic freshwater ecosystems: endemism or global distribution of species?
inferredcites →https://doi.org/10.1111/jeu.12140openalex-snapshot
Evidence for Gene Duplication and Allelic Codominance (not Hierarchical Dominance) at the Mating‐Type Locus of the Ciliate, Euplotes crassus
inferredcites →https://doi.org/10.1111/zoj.12451openalex-snapshot
Taxonomy and molecular phylogeny of two new brackish hypotrichous ciliates, with the establishment of a new genus (Ciliophora, Spirotrichea)
inferredcites →https://doi.org/10.1127/archiv-hydrobiol/130/1994/257openalex-snapshot
Cost of Stenostomum-induced morphological defence in the ciliate Euplotes octocarinatus
inferredcites →https://doi.org/10.1128/mcb.13.1.248openalex-snapshot
Identification of cis and trans Components of a Novel Heat Shock Stress Regulatory Pathway in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1146/annurev-micro-090816-093342openalex-snapshot
Genetics and Epigenetics of Mating Type Determination in Paramecium and Tetrahymena
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/1810-522x-52-34openalex-snapshot
Ciliate (Euplotes sp.) predation by Pseudodiaptomus annandalei (Copepoda: Calanoida) and the effects of mono-algal and pluri-algal diets
inferredcites →https://doi.org/10.1186/gb-2006-7-s1-s10openalex-snapshot
Automatic annotation of eukaryotic genes, pseudogenes and promoters
inferredcites →https://doi.org/10.1186/gb-2006-7-s1-s11openalex-snapshot
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
inferredcites →https://doi.org/10.1186/s12864-018-4445-zopenalex-snapshot
EOGD: the Euplotes octocarinatus genome database
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/jcs.87.4.555openalex-snapshot
Signal-Induced Reorganization Of The Microtubular Cytoskeleton In The Ciliated Protozoon Euplotes Octocarinatus
inferredcites →https://doi.org/10.1371/journal.pbio.1001473openalex-snapshot
The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
inferredcites →https://doi.org/10.1371/journal.pbio.1001518openalex-snapshot
Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila
inferredcites →https://doi.org/10.1371/journal.pbio.1001889openalex-snapshot
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
inferredcites →https://doi.org/10.3354/ame039159openalex-snapshot
Periphytic ciliate colonization: annual cycle and responses to environmental conditions
inferredcites →https://doi.org/10.3354/dao030017openalex-snapshot
Fatal encephalitis due to the scuticociliate Uronema nigricans in sea-caged, southern bluefin tuna Thunnus maccoyii
inferredcites →https://doi.org/10.3354/dao046047openalex-snapshot
Philasterides dicentrarchi (Ciliophora, Scuticociliatida) as the causative agent of scuticociliatosis in farmed turbot Scophthalmus maximus in Galicia (NW Spain)
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1186/s12864-019-6189-9openalex-snapshot
Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
inferred← citeshttps://doi.org/10.1186/s12866-022-02543-9openalex-snapshot
Taxonomy and SSU rRNA gene-based phylogeny of two new Euplotes species from China: E. chongmingensis n. sp. and E. paramieti n. sp. (Protista, Ciliophora)
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